RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12015
(96 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 38.9 bits (91), Expect = 1e-05
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 43 LKCDVCEKGYRYKTGLWRHKK---FECGQEPKYQCPHCPHRSKHKAHLTTHMAIKH 95
L+C++C R K L H++ + C C R + + H + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 24.7 bits (54), Expect = 2.8
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 69 EPKYQCPHCPHRSKHKAHLTTHM 91
QC C + KA L H
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQ 27
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 37.9 bits (89), Expect = 2e-05
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
KC C K L H++ C P ++C +C +K ++L+ HM
Sbjct: 11 KCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKK 59
Score = 25.2 bits (56), Expect = 1.7
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 72 YQCPHCPHRSKHKAHLTTHMAI 93
+C C + KA L H I
Sbjct: 10 EKCSECSYSCSSKAALRIHERI 31
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 37.5 bits (88), Expect = 3e-05
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPK-YQCPHCPHRSKHKAHLTTHMAIKH 95
+C +C + + H + + + CPHC K+ L H+ +H
Sbjct: 17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 25.9 bits (58), Expect = 1.1
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 72 YQCPHCPHRSKHKAHLTTHMAIKH 95
Y+C C R + H+ KH
Sbjct: 16 YECYICHARFTQSGTMKMHILQKH 39
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 37.5 bits (88), Expect = 3e-05
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPK-YQCPHCPHRSKHKAHLTTHMAIKH 95
+C VC + Y + + RH + K Y CP C K ++T H+ I H
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 33.2 bits (77), Expect = 0.002
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
KCD C+ +RYK L HK G++P Y+C C + A+L TH I
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRI 67
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 32.8 bits (76), Expect = 0.003
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
KC C+ + L +H + + P ++C CP+ S++ + LT H+
Sbjct: 38 KCKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVHLRS 86
Score = 31.6 bits (73), Expect = 0.010
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
KC+VC K + K L H + G +P Y+C C + + + L H+ I
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRI 58
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 32.8 bits (76), Expect = 0.004
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
C++C K +R L RHK G++P Y CP C R K K ++ H+
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRS 57
Score = 30.2 bits (69), Expect = 0.031
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPK-YQCPHCPHRSKHKAHLTTHMAIKH 95
C VC ++ K + H + G K Y C C HL H+ H
Sbjct: 37 SCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 32.0 bits (72), Expect = 0.004
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
C+ C + + L +H + P Y C +C K K +LT HM
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKS 51
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 31.1 bits (69), Expect = 0.027
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 45 CDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAIKH 95
C +C + L +H ++ E CP C H+ KH
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVCKKH 124
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 30.3 bits (67), Expect = 0.040
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 43 LKCDVCEK-GYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAIKH 95
C C + GL +H + + +C HC + K KA L H +H
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 30.2 bits (69), Expect = 0.046
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAIKH 95
C VC++ +R + L H G+ P Y+C C + K L +HM H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 30.2 bits (69), Expect = 0.052
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHM 91
+C C K + K L H + G++P ++CP C K +L H
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHE 55
Score = 29.0 bits (66), Expect = 0.12
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFEC---GQEPKYQCPHCPHRSKHKAHLTTHMAI 93
+C C K Y K L H+ C ++ + C C + + L HM
Sbjct: 37 ECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVCQETFRRRMELRLHMVS 88
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 29.3 bits (67), Expect = 0.058
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
C C K + K+ + +H G++P ++C C ++L TH
Sbjct: 31 PCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAFSQSSNLITHSRK 79
Score = 28.5 bits (65), Expect = 0.11
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
C +C K ++ + L H P Y C +C R K+ + H I
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFI 51
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 28.9 bits (66), Expect = 0.062
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTH 90
KCD C K + + + L +H++ G++P Y+C C ++HL H
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGH 65
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 29.0 bits (66), Expect = 0.069
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTH 90
C C K + + L +H++ G++P Y+C C + L H
Sbjct: 16 GCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINH 61
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 28.6 bits (65), Expect = 0.071
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHM 91
C+VC + + + L RH + ++P Y C C + L H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHA 50
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 29.0 bits (66), Expect = 0.088
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 44 KCDVCEKGYRYKTGLWRHKKF---ECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
C C+K +R K L H K + C C + + H
Sbjct: 17 ACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 28.7 bits (63), Expect = 0.12
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 43 LKCDVCEK-GYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAIKH 95
+ C C+ G + GL +H + C QE + C HC + + A + H+ H
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHME-NCKQEM-FTCHHCGKQLRSLAGMKYHVMANH 86
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 29.3 bits (67), Expect = 0.14
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTH 90
C C K + L H++ G++P Y+CP C K LT H
Sbjct: 23 ACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRH 68
Score = 28.6 bits (65), Expect = 0.22
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTH 90
C C K + L H++ G++P Y+CP C + +L TH
Sbjct: 107 ACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTH 152
Score = 28.6 bits (65), Expect = 0.25
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTH 90
KC C K + K L RH++ G++P Y+CP C +A+L H
Sbjct: 51 KCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAH 96
Score = 28.2 bits (64), Expect = 0.26
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
KC C K + + L H++ G++P Y CP C AHL H
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAHQRT 127
Score = 27.4 bits (62), Expect = 0.63
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTH 90
KC C K + + L H++ G++P Y+CP C + L H
Sbjct: 135 KCPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVH 180
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 27.8 bits (63), Expect = 0.26
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
C C K + +K+ RH G P Y C C + K K HL HM I
Sbjct: 12 PCQ-CGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKI 59
Score = 27.0 bits (61), Expect = 0.63
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHM 91
C VC K ++ K L H K G +P Y+C C R + H+
Sbjct: 39 GCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSFHRHV 85
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 27.8 bits (63), Expect = 0.28
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
CD+C K +R + L H+ ++P ++C C L H +
Sbjct: 47 TCDICHKAFRRQDHLRDHRYIHSKEKP-FKCQECGKGFCQSRTLAVHKTL 95
Score = 27.8 bits (63), Expect = 0.31
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
C C + + L H++ + P Y C C + + HL H I
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDHRYI 67
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 27.3 bits (61), Expect = 0.29
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 58 LWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHM 91
L RH + GQ+P +QC C HLTTH+
Sbjct: 37 LTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 27.4 bits (60), Expect = 0.42
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 60 RHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAIKH 95
H + E Y+C +C ++ T H+ +H
Sbjct: 7 HHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH 42
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB:
1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z*
1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z*
1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Length = 83
Score = 27.1 bits (60), Expect = 0.48
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 51 GYRYKTGLW-RHKKFECGQEPKYQCPHCPHRS 81
G RY R + E + CP+C
Sbjct: 6 GARYGRVSRRRVAEIESEMNEDHACPNCGEDR 37
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 26.7 bits (60), Expect = 0.51
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
+C +C + + L H + G++P + C C + H I
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDI 53
Score = 24.0 bits (53), Expect = 5.0
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMA 92
CD+C + + RH+ + HL +A
Sbjct: 33 ACDICGRKFARSDERKRHRDIQ--HILPILEDKVEELLSKNYHLENEVA 79
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 27.0 bits (59), Expect = 0.59
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 40 HIDLKCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMA-IKHY 96
H + K L + E Q+ +C +C H + L+ HM KHY
Sbjct: 50 HETDNNNPKRWSKPRKRSLLEMEGKEDAQKV-LKCMYCGHSFESLQDLSVHMIKTKHY 106
Score = 26.3 bits (57), Expect = 1.4
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 58 LWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI-KHY 96
+ G K++C C LT HM HY
Sbjct: 7 GKLYGSIFTG-ASKFRCKDCSAAYDTLVELTVHMNETGHY 45
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 26.4 bits (59), Expect = 0.74
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 48 CEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAIKH 95
C+K + + L RH+K G + C K H+A H
Sbjct: 39 CDKRFSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWTLYLKHVAECH 85
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 25.6 bits (55), Expect = 0.75
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 72 YQCPHCPHRSKHKAHLTTHMAIKH 95
YQC +C RS ++L TH+ KH
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKH 26
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.2 bits (54), Expect = 0.97
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 72 YQCPHCPHRSKHKAHLTTHMA 92
Y+CP C + S KA+L H+
Sbjct: 10 YKCPQCSYASAIKANLNVHLR 30
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.4
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQC 74
KCD+C K + ++ L RH ++P
Sbjct: 14 KCDICGKSFCGRSRLNRHSMVHTAEKP-SGP 43
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA,
protein-protein; 2.40A {Haloarcula marismortui} SCOP:
g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1*
1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1*
1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Length = 73
Score = 25.5 bits (56), Expect = 1.5
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 51 GYRYKTGLW-RHKKFECGQEPKYQCPHCPHRS 81
G RY + R + E + KY+CP C
Sbjct: 6 GPRYGLKIRVRVRDVEIKHKKKYKCPVCGFPK 37
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic
sequnece for R-proteins, ribonucleoprotein, ribosoma
protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A
{Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z*
3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z*
3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z*
3i56_Z* 3cpw_Y* 4adx_Z
Length = 116
Score = 26.1 bits (57), Expect = 1.6
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 51 GYRYKTGLW-RHKKFECGQEPKYQCPHC 77
G RY R + E + CP+C
Sbjct: 39 GARYGRVSRRRVAEIESEMNEDHACPNC 66
>2r47_A Uncharacterized protein MTH_862; unknown function, structural
genomics, APC5901, PSI-2; 1.88A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 157
Score = 26.1 bits (57), Expect = 1.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 3 VCLCVMFVRKGTNTKLDFGVIRNSSVD 29
+C MF R G LDF + N+ +D
Sbjct: 123 LCYMDMFARAGWYELLDFDCVINADID 149
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 24.9 bits (54), Expect = 1.7
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHC 77
C++C K +R L RHK G++P Y
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPS 46
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 24.8 bits (55), Expect = 1.7
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 72 YQCPHCPHRSKHKAHLTTHMAI 93
Y+C C R AHL H+ I
Sbjct: 12 YKCETCGARFVQVAHLRAHVLI 33
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 26.4 bits (57), Expect = 1.7
Identities = 7/29 (24%), Positives = 8/29 (27%)
Query: 67 GQEPKYQCPHCPHRSKHKAHLTTHMAIKH 95
YQC C L H+A
Sbjct: 176 SSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1
Length = 88
Score = 25.6 bits (55), Expect = 1.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 66 CGQEPKYQCPHCPHRSKHKAHLTTHM 91
Q YQC HC + + A LT+H+
Sbjct: 20 RLQNSTYQCKHCDSKLQSTAELTSHL 45
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 25.9 bits (56), Expect = 1.9
Identities = 6/48 (12%), Positives = 16/48 (33%)
Query: 19 DFGVIRNSSVDKSLNTNVLTVHIDLKCDVCEKGYRYKTGLWRHKKFEC 66
D+ +S ++++ N+ L+ + E+ L
Sbjct: 185 DYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
Score = 25.9 bits (56), Expect = 2.3
Identities = 3/27 (11%), Positives = 7/27 (25%)
Query: 69 EPKYQCPHCPHRSKHKAHLTTHMAIKH 95
E + Q + L + +
Sbjct: 206 EKRLQREKSEQVLDNPEDLRGPIHLSV 232
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 24.4 bits (53), Expect = 1.9
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEP 70
KC C++ + + L +H++ +
Sbjct: 14 KCSKCDRVFTQRNYLVQHERTHARKSG 40
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 25.3 bits (56), Expect = 2.0
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 58 LWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHM 91
L RH + G +P +QC C HL HM
Sbjct: 63 LTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALHM 95
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.1
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPH 76
C+VC K + L +H + +
Sbjct: 14 SCNVCGKAFVLSAHLNQHLRVHTQETL-SGPSS 45
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus}
Length = 72
Score = 25.2 bits (55), Expect = 2.2
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 51 GYRYKTGLW-RHKKFECGQEPKYQCPHC 77
G RY + L + KK E Q +Y C C
Sbjct: 5 GVRYGSSLRRQVKKLEIQQHARYDCSFC 32
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 24.4 bits (54), Expect = 2.2
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 72 YQCPHCPHRSKHKAHLTTHMAI 93
Y C C R +H L +H+ I
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRI 33
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 24.2 bits (53), Expect = 2.2
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 69 EPKYQCPHCPHRSKHKAHLTTHM 91
+QCP C HL H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHR 31
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,,
protein structure initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Enterococcus
faecalis} SCOP: c.47.1.13
Length = 175
Score = 25.9 bits (57), Expect = 2.3
Identities = 4/25 (16%), Positives = 8/25 (32%), Gaps = 5/25 (20%)
Query: 72 YQCPHCPHRSKHKAHLTTHMAIKHY 96
+CP+C K + +
Sbjct: 37 VRCPYC-----RKWFEESEELLAQS 56
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 2.7
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQC 74
KC VC K +R + L +H G+ P
Sbjct: 14 KCQVCGKAFRVSSHLVQHHSVHSGERP-SGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 2.7
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQC 74
KCDVC K +RY + L H++ G++P
Sbjct: 14 KCDVCHKSFRYGSSLTVHQRIHTGEKP-SGP 43
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 24.7 bits (55), Expect = 2.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 44 KCDV--CEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
C V C++ + L RH + GQ+P +QC C HLTTH+
Sbjct: 6 ACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRT 56
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 24.1 bits (51), Expect = 3.0
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 68 QEPKYQCPHCPHRSKHKAHLTTHMAIKH 95
E Y CP C R K K ++ H+
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 3.3
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQC 74
KCDVC K + + L H++ G++P
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTGEKP-SGP 43
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB:
3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 1s1i_9
Length = 92
Score = 24.8 bits (54), Expect = 3.3
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 51 GYRYKTGLWR-HKKFECGQEPKYQCPHC 77
G RY + L R KK E Q +Y C C
Sbjct: 15 GVRYGSSLRRQVKKLEIQQHARYDCSFC 42
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_m 1ysh_D 2zkr_z
Length = 92
Score = 24.8 bits (54), Expect = 3.4
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 51 GYRYKTGLWR-HKKFECGQEPKYQCPHC 77
G RY L + KK E Q KY C C
Sbjct: 15 GTRYGASLRKQIKKMEVSQHSKYFCEFC 42
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 24.9 bits (53), Expect = 3.7
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 3/49 (6%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMA 92
+C +C H++ CP+C R H +
Sbjct: 18 QCRLCNAKLSSLLEQGSHERL---CRNAAVCPYCSLRFFSPELKQEHES 63
Score = 23.7 bits (50), Expect = 9.7
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 43 LKCDVCEKGYRYKTGLWRHKK 63
L C C + ++ +WRH+
Sbjct: 70 LTCLECMRTFKSSFSIWRHQV 90
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 4.2
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQC 74
KC+ C KGY + L H++ G++
Sbjct: 14 KCEDCGKGYNRRLNLDMHQRVHMGEKT-SGP 43
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 24.4 bits (54), Expect = 4.2
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 48 CEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHM 91
C + L RH + G P +QC C HL HM
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRP-FQCQKCDRAFSRSDHLALHM 85
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 23.7 bits (52), Expect = 4.4
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQC 74
KC C+ + + L H+ G++P
Sbjct: 14 KCRECDMCFSQASSLRLHQNVHVGEKP-SGP 43
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 24.0 bits (53), Expect = 4.7
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 44 KCDV--CEKGYRYKTGLWRHKKFECGQEPKYQCPH--CPHRSKHKAHLTTHMAI 93
CD C + + + L HKK++ + + CP C K HL HM +
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics,
ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 56
Score = 23.8 bits (51), Expect = 5.0
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 66 CGQEPKYQCPHC 77
C ++PKY+CP C
Sbjct: 18 CLEKPKYRCPAC 29
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 24.4 bits (54), Expect = 5.1
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPH--CPHRSKHKAHLTTHMAI 93
C C K + + L RH+ G++P +QC C R +L TH+ I
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTHVRI 86
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Y 4a1c_Y 4a1e_Y
Length = 103
Score = 24.5 bits (53), Expect = 5.1
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 51 GYRYKTGLWR-HKKFECGQEPKYQCPHC 77
G RY L + KKFE Q KY CP C
Sbjct: 15 GTRYGASLRKVVKKFEITQHAKYGCPFC 42
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 5.2
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQC 74
KC+ C KGY K L H+K G+ P
Sbjct: 14 KCEKCGKGYNSKFNLDMHQKVHTGERP-SGP 43
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 24.4 bits (54), Expect = 5.5
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQC--PHCPHRSKHKAHLTTHM 91
+C C++ + L H + G++P + C P C + L H
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRHH 116
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 23.1 bits (49), Expect = 5.7
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 72 YQCPHCPHRSKHKAHLTTHM 91
+ CP CP R L+ H+
Sbjct: 3 FACPACPKRFMRSDALSKHI 22
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 5.7
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQC 74
KC+ C KG+ ++ L H + ++
Sbjct: 14 KCNECGKGFGRRSHLAGHLRLHSREKS-SGP 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.8 bits (53), Expect = 5.9
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 27/69 (39%)
Query: 18 LDFGV----IRNSSVDKSLNTNVLTVHIDLKCDVCEKGYRYKTGLWRHKKFECGQEPKYQ 73
LDF IR+ S + + ++L LK YK Y
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLK--------FYK---------------PYI 534
Query: 74 CPHCPHRSK 82
C + P +
Sbjct: 535 CDNDPKYER 543
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 23.3 bits (51), Expect = 6.2
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHC 77
C C KG+ L H K E ++C
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.44.1.6
Length = 98
Score = 24.3 bits (52), Expect = 6.3
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 16/80 (20%)
Query: 13 GTNTKLDFGVIRNSS-VDKSLNTNVLTVHIDLKCDVCEK----GYRYKTGLWRHKKFECG 67
G++ +NSS + + L H+ + C+ C++ G YK C
Sbjct: 1 GSSGSSGLEEFKNSSKLVAAAEKERLDKHLGIPCNNCKQFPIEGKCYK----------CT 50
Query: 68 QEPKYQ-CPHCPHRSKHKAH 86
+ +Y C C H +H
Sbjct: 51 ECIEYHLCQECFDSYCHLSH 70
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 6.4
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQC 74
KC+ C K +R+ + L RH++ G++P
Sbjct: 14 KCNECGKVFRHNSYLSRHQRIHTGEKP-SGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 6.4
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPH 76
KC+ C K + + L RH++ G +P
Sbjct: 14 KCNECGKVFTQNSHLARHRRVHTGGKP-SGPSS 45
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 6.6
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQC 74
KC+ C K + + L H + G++P
Sbjct: 14 KCNECGKVFTQNSHLTNHWRIHTGEKP-SGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 23.3 bits (51), Expect = 6.9
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQC 74
KC+ C KG+ + L+ H G++P
Sbjct: 14 KCEECGKGFICRRDLYTHHMVHTGEKP-SGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 7.3
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPH 76
KC+ C K + + L RH++ G++P
Sbjct: 14 KCNECGKAFSQTSKLARHQRIHTGEKP-SGPSS 45
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 22.9 bits (50), Expect = 7.6
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQC 74
KC CEK + K L H++ ++P
Sbjct: 14 KCSQCEKSFSGKLRLLVHQRMHTREKP-SGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.8 bits (50), Expect = 7.9
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPH 76
C VC K + ++ L +H+K G++P
Sbjct: 14 ICTVCGKAFTDRSNLIKHQKIHTGEKP-SGPSS 45
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.8 bits (50), Expect = 8.1
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPH 76
KC+ C K + + L RH+ G++P
Sbjct: 14 KCNECGKVFTQNSHLARHRGIHTGEKP-SGPSS 45
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.8 bits (50), Expect = 8.3
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPH 76
KC+ C K + + L RH+ G++P
Sbjct: 14 KCNECGKVFTQNSHLVRHRGIHTGEKP-SGPSS 45
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 8.6
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQC 74
KC+ C K +R + L H+ G++P
Sbjct: 14 KCNECGKAFRAHSNLTTHQVIHTGEKP-SGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.8 bits (50), Expect = 8.6
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPH 76
KC+ C K + + L RH+ G++P
Sbjct: 14 KCNECGKVFTQNSHLARHRGIHTGEKP-SGPSS 45
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Length = 82
Score = 23.4 bits (50), Expect = 8.9
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 25 NSSVDKSLNTNVLTVHIDLKCDVCEK----GYRYK 55
SS + + H+ KCD C G R+
Sbjct: 4 GSSGQQMQAESGFVQHVGFKCDNCGIEPIQGVRWH 38
>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin +
alpha-helix; NMR {Drosophila melanogaster} SCOP:
g.37.1.2 PDB: 1jn7_A
Length = 36
Score = 22.8 bits (48), Expect = 9.0
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 45 CDVCEKGYRYKTGLWRHKKFECGQEP 70
C C+ + Y HK+F C +P
Sbjct: 11 CSTCDISFNYVKTYLAHKQFYCKNKP 36
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 9.2
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPH 76
+C VC K + ++ L H++ G++P
Sbjct: 14 ECSVCGKAFSHRQSLSVHQRIHSGKKP-SGPSS 45
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.8 bits (50), Expect = 9.2
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPH 76
+CDVC K + + L +H++ G++P
Sbjct: 14 ECDVCRKAFSHHASLTQHQRVHSGEKP-SGPSS 45
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 9.3
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPH 76
C+ C K + + L H+ G++P
Sbjct: 14 MCNECGKAFSVYSSLTTHQVIHTGEKP-SGPSS 45
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 9.7
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPH 76
KC C K Y + L +H++ G++P
Sbjct: 14 KCGECGKSYNQRVHLTQHQRVHTGEKP-SGPSS 45
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 22.5 bits (49), Expect = 9.9
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPH 76
C C K + GL +H++ G++P
Sbjct: 14 DCIDCGKAFSDHIGLNQHRRIHTGEKP-SGPSS 45
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 22.5 bits (49), Expect = 10.0
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQC 74
C C K +R+ + L +H++ G++P
Sbjct: 14 NCKECGKSFRWASCLLKHQRVHSGEKP-SGP 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.138 0.464
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,358,755
Number of extensions: 62383
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 211
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)