RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12015
(96 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 28.9 bits (64), Expect = 0.019
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
C C K + +K+ RH Y C C + K K HL HM I
Sbjct: 5 PCQ-CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHMKI 52
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 27.4 bits (60), Expect = 0.052
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 72 YQCPHCPHRSKHKAHLTTHMAIKH 95
YQC +C RS ++L TH+ KH
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKH 26
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.5 bits (59), Expect = 0.12
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 72 YQCPHCPHRSKHKAHLTTHMAIKH 95
Y+C C R + H+ KH
Sbjct: 9 YECYICHARFTQSGTMKMHILQKH 32
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 26.5 bits (59), Expect = 0.12
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 72 YQCPHCPHRSKHKAHLTTHMAIKH 95
Y C C HL H+ H
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVH 29
Score = 22.3 bits (48), Expect = 4.1
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQC 74
C C KG+ L H K E ++C
Sbjct: 7 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 26.3 bits (58), Expect = 0.14
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 60 RHKKFECGQEPKYQCPHCPHRSKHKAHLTTHMAI 93
R + + + Y+C C H + L+ H
Sbjct: 2 RSEWQQRERRR-YKCDECGKSFSHSSDLSKHRRT 34
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 25.8 bits (57), Expect = 0.18
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 69 EPKYQCPHCPHRSKHKAHLTTHMAIKH 95
E Y C HC + K L H H
Sbjct: 6 EKPYACSHCDKTFRQKQLLDMHFKRYH 32
Score = 21.9 bits (47), Expect = 5.9
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 44 KCDVCEKGYRYKTGLWRHKK 63
C C+K +R K L H K
Sbjct: 10 ACSHCDKTFRQKQLLDMHFK 29
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 25.3 bits (56), Expect = 0.31
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 72 YQCPHCPHRSKHKAHLTTHMAI 93
Y C C + L H +
Sbjct: 8 YGCVECGKAFSRSSILVQHQRV 29
Score = 23.0 bits (50), Expect = 2.6
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 44 KCDVCEKGYRYKTGLWRHKK 63
C C K + + L +H++
Sbjct: 9 GCVECGKAFSRSSILVQHQR 28
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 25.0 bits (55), Expect = 0.32
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 72 YQCPHCPHRSKHKAHLTTHMAI 93
+ CP CP R HL+ H+
Sbjct: 3 FACPECPKRFMRSDHLSKHIKT 24
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 24.5 bits (54), Expect = 0.47
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 72 YQCPHCPHRSKHKAHLTTHMAI 93
+ C C + HL H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS 24
Score = 21.8 bits (47), Expect = 4.9
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 44 KCDVCEKGYRYKTGLWRHKK 63
C+VC + + + L RH +
Sbjct: 4 VCEVCTRAFARQEHLKRHYR 23
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 24.1 bits (53), Expect = 0.74
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 72 YQCPHCPHRSKHKAHLTTHMAI 93
+QC C HLTTH+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRT 25
Score = 22.2 bits (48), Expect = 3.7
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 44 KCDVCEKGYRYKTGLWRHKK 63
+C +C + + L H +
Sbjct: 5 QCRICMRNFSRSDHLTTHIR 24
>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 25.0 bits (54), Expect = 0.89
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 68 QEPKYQCPHCPHRSKHKAHLTTHM 91
Q YQC HC + + A LT+H+
Sbjct: 15 QNSTYQCKHCDSKLQSTAELTSHL 38
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.5 bits (50), Expect = 1.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 71 KYQCPHCPHRSKHKAHLTTHMAIKH 95
K+ CPHC K+ L H+ +H
Sbjct: 2 KFHCPHCDTVIARKSDLGVHLRKQH 26
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.1 bits (49), Expect = 2.1
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 69 EPKYQCPHCPHRSKHKAHLTTHM 91
E ++C CP+ S++ + LT H+
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHL 23
>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 73
Score = 23.5 bits (51), Expect = 2.9
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 51 GYRYKTGLWRH-KKFECGQEPKYQCPHC 77
G RY R + E + CP+C
Sbjct: 6 GARYGRVSRRRVAEIESEMNEDHACPNC 33
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 22.4 bits (48), Expect = 3.7
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 69 EPKYQCPHCPHRSKHKAHLTTHMAI 93
+ + C C KA+ H+ +
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKV 29
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 21.4 bits (46), Expect = 6.8
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 44 KCDVCEKGYRYKTGLWRHKK 63
KC C K + +GL H++
Sbjct: 4 KCLECGKAFSQNSGLINHQR 23
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 21.5 bits (45), Expect = 7.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 69 EPKYQCPHCPHRSKHKAHLTTHM 91
E Y CP C R K K ++ H+
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHV 23
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 21.6 bits (46), Expect = 7.6
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 72 YQCPHCPHRSKHKAHLTTHMAI 93
+QCP C HL H
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKR 33
>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 73
Score = 21.9 bits (47), Expect = 9.0
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 51 GYRYKTGLWRH-KKFECGQEPKYQCPHC 77
G RY + E + K++CP C
Sbjct: 6 GPRYGLKIRVRVADVEIKHKKKHKCPVC 33
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 21.2 bits (45), Expect = 9.3
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 44 KCDVCEKGYRYKTGLWRHKKFECGQEPKYQC 74
C K + +K L H K Y C
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRD-YIC 34
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator
(DsbA) {Escherichia coli [TaxId: 562]}
Length = 188
Score = 22.6 bits (47), Expect = 9.4
Identities = 4/6 (66%), Positives = 5/6 (83%)
Query: 72 YQCPHC 77
+ CPHC
Sbjct: 28 FFCPHC 33
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 21.2 bits (44), Expect = 9.7
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 44 KCDVCEKGYRYKTGLWRHKK 63
KC +CE+ + K+ L RH++
Sbjct: 2 KCGLCERSFVEKSALSRHQR 21
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.138 0.464
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 353,073
Number of extensions: 13976
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 72
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)