RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12016
(111 letters)
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 35.1 bits (80), Expect = 0.003
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 15/75 (20%)
Query: 16 DSGMFTCDV--CFKEYKYKRGLVRHKKNS-CKQK------PQNLDGL------FSCDVCG 60
D + C V C K+YK + GL H + QK P+ ++ + C+VC
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCD 405
Query: 61 KHYKYKKGLGRHKRY 75
K YK GL H+++
Sbjct: 406 KRYKNLNGLKYHRKH 420
Score = 26.2 bits (57), Expect = 4.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNS 42
+ C+VC K YK GL H+K+S
Sbjct: 399 YRCEVCDKRYKNLNGLKYHRKHS 421
Score = 25.8 bits (56), Expect = 5.2
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 20/73 (27%)
Query: 54 FSCDV--CGKHYKYKKGLGRHKRY-ECGQEPK-----------------YECDQCPHRTK 93
+ C V C K YK + GL H + Q+ Y C+ C R K
Sbjct: 350 YKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYK 409
Query: 94 HISSLKKHMALKH 106
+++ LK H H
Sbjct: 410 NLNGLKYHRKHSH 422
>gnl|CDD|235840 PRK06599, PRK06599, DNA topoisomerase I; Validated.
Length = 675
Score = 30.2 bits (69), Expect = 0.19
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 26 FKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRY-ECGQEPKYE 84
+ E KY + + R + + + + C CG KK GR+ ++ C P E
Sbjct: 612 YPECKYTKNITRDEDE--PIEEEEIVEEEKCPKCGGPLVLKK--GRYGKFLACSGYP--E 665
Query: 85 CDQCPHRTKHISSLKK 100
C KHI L+K
Sbjct: 666 C-------KHIKPLEK 674
>gnl|CDD|215056 PLN00104, PLN00104, MYST -like histone acetyltransferase;
Provisional.
Length = 450
Score = 28.6 bits (64), Expect = 0.68
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 19 MFTCDVCFKEYKYKRGLVRHKK 40
++ C+ C K K K L RH K
Sbjct: 198 LYFCEFCLKFMKRKEQLQRHMK 219
Score = 26.3 bits (58), Expect = 4.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 53 LFSCDVCGKHYKYKKGLGRHKR 74
L+ C+ C K K K+ L RH +
Sbjct: 198 LYFCEFCLKFMKRKEQLQRHMK 219
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 28.2 bits (64), Expect = 0.99
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 43 CKQKPQNLDGLFSCDVCGKHY 63
C + Q D +C+VCG Y
Sbjct: 145 CGAEDQYGD---NCEVCGATY 162
>gnl|CDD|206675 cd01888, eIF2_gamma, Gamma subunit of initiation factor 2 (eIF2
gamma). eIF2 is a heterotrimeric translation
initiation factor that consists of alpha, beta, and
gamma subunits. The GTP-bound gamma subunit also binds
initiator methionyl-tRNA and delivers it to the 40S
ribosomal subunit. Following hydrolysis of GTP to GDP,
eIF2:GDP is released from the ribosome. The gamma
subunit has no intrinsic GTPase activity, but is
stimulated by the GTPase activating protein (GAP) eIF5,
and GDP/GTP exchange is stimulated by the guanine
nucleotide exchange factor (GEF) eIF2B. eIF2B is a
heteropentamer, and the epsilon chain binds eIF2. Both
eIF5 and eIF2B-epsilon are known to bind strongly to
eIF2-beta, but have also been shown to bind directly to
eIF2-gamma. It is possible that eIF2-beta serves simply
as a high-affinity docking site for eIF5 and
eIF2B-epsilon, or that eIF2-beta serves a regulatory
role. eIF2-gamma is found only in eukaryotes and
archaea. It is closely related to SelB, the
selenocysteine-specific elongation factor from
eubacteria. The translational factor components of the
ternary complex, IF2 in eubacteria and eIF2 in
eukaryotes are not the same protein (despite their
unfortunately similar names). Both factors are GTPases;
however, eubacterial IF-2 is a single polypeptide,
while eIF2 is heterotrimeric. eIF2-gamma is a member of
the same family as eubacterial IF2, but the two
proteins are only distantly related. This family
includes translation initiation, elongation, and
release factors.
Length = 197
Score = 26.8 bits (60), Expect = 1.9
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 16/48 (33%)
Query: 52 GLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTK---HIS 96
++ C CG P+ EC C TK H+S
Sbjct: 46 KIYKCPNCG-------------CPRPYDTPECECPGCGGETKLVRHVS 80
>gnl|CDD|227360 COG5027, SAS2, Histone acetyltransferase (MYST family) [Chromatin
structure and dynamics].
Length = 395
Score = 26.7 bits (59), Expect = 2.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 19 MFTCDVCFKEYKYKRGLVRHKKNSCKQKP 47
++ C+ C K Y + LVRH+K Q P
Sbjct: 158 VYICEFCLKYYGSQTSLVRHRKKCSLQHP 186
>gnl|CDD|238702 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs
from several gram positive bacterial species and
Fusobacteria; and are members of the SIR2 family of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 225
Score = 26.2 bits (58), Expect = 4.0
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 18/49 (36%)
Query: 48 QNLDGLFS------------------CDVCGKHYKYKKGLGRHKRYECG 78
QN+DGL C VCGK +++ L +CG
Sbjct: 95 QNIDGLHQKAGSKNVVEFHGSLYRIYCTVCGKTVDWEEYLKSPYHAKCG 143
>gnl|CDD|224272 COG1353, COG1353, Predicted CRISPR-associated polymerase [Defense
mechanisms].
Length = 799
Score = 26.3 bits (58), Expect = 4.7
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 12/51 (23%)
Query: 15 NDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKY 65
+ G TC VC G R K +S K+ CDVC Y+
Sbjct: 391 DGPGERTCSVC--------GNKRAKGDSEKEM----RAETLCDVCRVLYEL 429
>gnl|CDD|177288 PHA00616, PHA00616, hypothetical protein.
Length = 44
Score = 24.3 bits (53), Expect = 4.9
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 19 MFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLD 51
M+ C C ++ K+ ++ H + KQ L+
Sbjct: 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE 33
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.466
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,274,402
Number of extensions: 404779
Number of successful extensions: 523
Number of sequences better than 10.0: 1
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 57
Length of query: 111
Length of database: 10,937,602
Length adjustment: 75
Effective length of query: 36
Effective length of database: 7,611,052
Effective search space: 273997872
Effective search space used: 273997872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)