RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12016
(111 letters)
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 42.5 bits (101), Expect = 6e-07
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHG 107
C C K L H+R C P ++C+ C TK S+L KHM HG
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 29.0 bits (66), Expect = 0.089
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKR 74
C C K L H++ C +P F C+ C K L +H +
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRP------FKCNYCSFDTKQPSNLSKHMK 58
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 42.0 bits (99), Expect = 1e-06
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 54 FSCDVCGKHYKYKKGLGRHKR---YECGQEPKYECDQCPHRTKHISSLKKHMALKHGVES 110
C++CG + K L H+R + C+ C R + S+ H + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Score = 35.5 bits (82), Expect = 4e-04
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 10/76 (13%)
Query: 20 FTCDVCFKEYKYKRGLVRHKK---NSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYE 76
C++C + K L H++ + F C+ CGK ++ + H+ +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALR------FPCEFCGKRFEKPDSVAAHRS-K 60
Query: 77 CGQEPKYECDQCPHRT 92
+ +
Sbjct: 61 SHPALLLAPQESSGPS 76
Score = 25.4 bits (56), Expect = 1.9
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 80 EPKYECDQCPHRTKHISSLKKHM 102
+C+ C + +SL H
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQ 27
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 39.4 bits (93), Expect = 2e-05
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
C++C K ++ L RHK + +KP +SC VCG +K K + H R G
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP------YSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 80 EPK-YECDQCPHRTKHISSLKKHM 102
K Y C C L H+
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHI 85
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 38.7 bits (91), Expect = 2e-05
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPK-YECDQCPHRTKHISSLKKHMALKH 106
+ C +C + + H + + + C C S L H+ +H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 29.8 bits (68), Expect = 0.055
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 69 LGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHG 107
G R G++P YEC C R ++K H+ KH
Sbjct: 3 SGSSGRTHSGEKP-YECYICHARFTQSGTMKMHILQKHT 40
Score = 26.3 bits (59), Expect = 0.93
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 8/57 (14%)
Query: 20 FTCDVCFKEYKYKRGLVRHKK--NSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKR 74
+ C +C + + H ++ F C C K LG H R
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAK------FHCPHCDTVIARKSDLGVHLR 66
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 38.3 bits (90), Expect = 2e-05
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPK-YECDQCPHRTKHISSLKKHMALKHGV 108
+ C VC + Y + RH + K Y C C ++ H+ + H +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 29.1 bits (66), Expect = 0.073
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCK--QKPQNLDGLFSCDVCGKHYKYKKGLGRHKR 74
+ C VC + Y + RH S K K + C C K + K + H +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKV------YPCPFCFKEFTRKDNMTAHVK 61
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 38.2 bits (90), Expect = 5e-05
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
C+VC K + K L H + KP + C C L +H R +
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKP------YKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 80 EPKYECDQCPHRTKHISSLKKHM 102
P ++C CP+ +++ S L H+
Sbjct: 63 RP-FKCQICPYASRNSSQLTVHL 84
Score = 27.0 bits (61), Expect = 0.63
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 13/66 (19%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKR----- 74
+ C C L +H + ++P F C +C + L H R
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERP------FKCQICPYASRNSSQLTVHLRSHTGD 90
Query: 75 --YECG 78
G
Sbjct: 91 SGPSSG 96
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 38.3 bits (90), Expect = 7e-05
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCK---QKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYE 76
F C C K Y K L+ H+ +C ++ F+C VC + ++ + L H
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQV------FTCSVCQETFRRRMELRLHMVSH 89
Query: 77 CGQEPKYECDQCPHRTKHISSLKKHMALKH 106
G+ P Y+C C + L+ HM H
Sbjct: 90 TGEMP-YKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 35.9 bits (84), Expect = 4e-04
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYEC-- 77
C C K++ K L H + +KP F C CGK Y K+ L H+ C
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKP------FECPKCGKCYFRKENLLEHEARNCMN 61
Query: 78 -GQEPKYECDQCPHRTKHISSLKKHM 102
++ + C C + L+ HM
Sbjct: 62 RSEQV-FTCSVCQETFRRRMELRLHM 86
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 35.1 bits (82), Expect = 5e-04
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
F C +C K +K L H +P + C CGK + K + +H G+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP------YPCQYCGKRFHQKSDMKKHTFIHTGE 55
Query: 80 EPKYECDQCPHRTKHISSLKKHM 102
+P ++C C S+L H
Sbjct: 56 KP-HKCQVCGKAFSQSSNLITHS 77
Score = 24.3 bits (54), Expect = 5.3
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKR 74
+ C C K + K + +H +KP C VCGK + L H R
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKP------HKCQVCGKAFSQSSNLITHSR 78
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 34.7 bits (79), Expect = 6e-04
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHG 107
C+ CG K L +H R P Y C C K +L KHM K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 25.8 bits (56), Expect = 0.95
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECG 78
+ C+ C K L +H + +P + C C +K K L +H + +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP------YHCTYCNFSFKTKGNLTKHMKSKAH 54
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 34.0 bits (79), Expect = 0.001
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHM 102
CD C ++YK L HK G++P Y C+ C + ++LK H
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHT 65
Score = 26.6 bits (60), Expect = 0.56
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKR 74
+ CD C ++YK L HK +KP + C++CG + L H R
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP------YRCNICGAQFNRPANLKTHTR 66
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 34.4 bits (80), Expect = 0.001
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 11/73 (15%)
Query: 20 FTCDVCFKEYKYKRGLVRHKK----NSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRY 75
+ C C K ++ K+ L H K + F C CGK + + + RH
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA------FVCSKCGKTFTRRNTMARHADN 69
Query: 76 ECGQEPKYECDQC 88
G + E +
Sbjct: 70 CAGPDG-VEGENS 81
Score = 30.6 bits (70), Expect = 0.031
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRY---ECGQEPKYECDQCPHRTKHISSLKKHM 102
++C C K ++ K+ L H + + C +C +++ +H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 34.3 bits (80), Expect = 0.001
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
F C C + + L+ H++ ++P ++CD+C K ++ + L H+ +
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERP------YTCDICHKAFRRQDHLRDHRYIHSKE 71
Query: 80 EPKYECDQCPHRTKHISSLKKHM 102
+P ++C +C +L H
Sbjct: 72 KP-FKCQECGKGFCQSRTLAVHK 93
Score = 33.6 bits (78), Expect = 0.003
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 34 GLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTK 93
G + S +K F C CG+H+ L H+R + P Y CD C +
Sbjct: 4 GSSGGRLPSKTKKE------FICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFR 56
Query: 94 HISSLKKH 101
L+ H
Sbjct: 57 RQDHLRDH 64
Score = 27.8 bits (63), Expect = 0.38
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
+TCD+C K ++ + L H+ K+KP F C CGK + + L HK
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKP------FKCQECGKGFCQSRTLAVHKTLHMQT 99
Query: 80 EPKYEC 85
Sbjct: 100 SS-PTA 104
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 34.0 bits (79), Expect = 0.002
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHM 102
F C +C +++ L H R G++P + CD C + K+H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHR 51
Score = 30.2 bits (69), Expect = 0.038
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
F C +C + + L H + +KP F+CD+CG+ + RH+ +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP------FACDICGRKFARSDERKRHRDIQ--H 55
Query: 80 EPKYECDQCPHRTKHISSLKKHMA 103
D+ L+ +A
Sbjct: 56 ILPILEDKVEELLSKNYHLENEVA 79
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 33.6 bits (78), Expect = 0.002
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 34 GLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTK 93
G +KP + C CGK + L +H+R G++P Y+C +C
Sbjct: 1 GSSGSSGIHSGEKP------YGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFS 53
Query: 94 HISSLKKH 101
S L H
Sbjct: 54 QNSGLINH 61
Score = 25.1 bits (56), Expect = 2.1
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
+ C C K + LV+H++ +KP + C CGK + GL H+R
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP------YKCLECGKAFSQNSGLINHQRIHTSG 68
Query: 80 EP 81
Sbjct: 69 PS 70
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 33.2 bits (77), Expect = 0.003
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 20 FTCDV--CFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYEC 77
+ C V C + + L RH + QKP F C +C +++ L H R
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKP------FQCRICMRNFSRSDHLTTHIRTHT 58
Query: 78 GQEPKYECDQCPHRTKHISSLKKHM 102
G++P + CD C + K+H
Sbjct: 59 GEKP-FACDICGRKFARSDERKRHT 82
Score = 25.1 bits (56), Expect = 3.1
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKR 74
F C +C + + L H + +KP F+CD+CG+ + RH +
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKP------FACDICGRKFARSDERKRHTK 83
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 34.2 bits (79), Expect = 0.003
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGL---FSCDVCGKHYKYKKGLGRHKRYE 76
C + + LV H P+ + + C GK +K K L H R
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 77 CGQEPKYECD--QCPHRTKHISSLKKHM 102
G++P + C C +LK H
Sbjct: 86 TGEKP-FPCPFPGCGKIFARSENLKIHK 112
Score = 33.4 bits (77), Expect = 0.006
Identities = 12/86 (13%), Positives = 20/86 (23%), Gaps = 14/86 (16%)
Query: 25 CFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPK-- 82
+ + + K Q C + + L H E P+
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLS------RPKKSCDRTFSTMHELVTHVTMEHVGGPEQN 56
Query: 83 ------YECDQCPHRTKHISSLKKHM 102
EC + K L H+
Sbjct: 57 NHVCYWEECPREGKSFKAKYKLVNHI 82
Score = 29.9 bits (68), Expect = 0.098
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 59 CGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHG 107
G + K K + Q C + L H+ ++H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLS-RPKKSCDRTFSTMHELVTHVTMEHV 50
Score = 29.6 bits (67), Expect = 0.12
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 22 CDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV--CGKHYKYKKGLGRHKRYECGQ 79
C K +K K LV H + +KP F C CGK + + L HKR G+
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKP------FPCPFPGCGKIFARSENLKIHKRTHTGE 118
Query: 80 EPKYEC--DQCPHRTKHISSLKKHM 102
+P ++C + C R + S KKHM
Sbjct: 119 KP-FKCEFEGCDRRFANSSDRKKHM 142
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 34.0 bits (79), Expect = 0.004
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
+ C C K + L H++ +KP + C CGK + KK L RH+R G+
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKP------YKCPECGKSFSDKKDLTRHQRTHTGE 75
Query: 80 EPKYECDQCPHRTKHISSLKKH 101
+P Y+C +C ++L+ H
Sbjct: 76 KP-YKCPECGKSFSQRANLRAH 96
Score = 34.0 bits (79), Expect = 0.004
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
+ C C K + L H++ +KP + C CGK + + L H+R G+
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKP------YKCPECGKSFSREDNLHTHQRTHTGE 159
Query: 80 EPKYECDQCPHRTKHISSLKKH 101
+P Y+C +C +L H
Sbjct: 160 KP-YKCPECGKSFSRRDALNVH 180
Score = 33.6 bits (78), Expect = 0.005
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
+ C C K + + L H++ +KP ++C CGK + L H+R G+
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKP------YACPECGKSFSQLAHLRAHQRTHTGE 131
Query: 80 EPKYECDQCPHRTKHISSLKKH 101
+P Y+C +C +L H
Sbjct: 132 KP-YKCPECGKSFSREDNLHTH 152
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 34.1 bits (77), Expect = 0.006
Identities = 10/61 (16%), Positives = 16/61 (26%), Gaps = 1/61 (1%)
Query: 15 NDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGL-FSCDVCGKHYKYKKGLGRHK 73
N+ G + + + +V P G + C VC L H
Sbjct: 141 NEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHV 200
Query: 74 R 74
Sbjct: 201 A 201
Score = 30.2 bits (67), Expect = 0.13
Identities = 6/58 (10%), Positives = 10/58 (17%), Gaps = 1/58 (1%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ 111
+ Y+C C L H+A +
Sbjct: 153 RIAEATSAIVSKHPARVGLPPTA-SSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNM 209
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 32.2 bits (74), Expect = 0.007
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 21 TCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV--CGKHYKYKKGLGRHKRYECG 78
+ C K +K L H+ + +Q P + C C K + L RH++ G
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLP------YECPHEGCDKRFSLPSRLKRHEKVHAG 58
Query: 79 QEPKYECDQCPHRTKHISSLKKHMALKH 106
+ D C K + KH+A H
Sbjct: 59 YPC-KKDDSCSFVGKTWTLYLKHVAECH 85
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 31.3 bits (72), Expect = 0.012
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 35 LVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKH 94
R + +++ + CD CGK + + L +H+R G++P Y+CD+C
Sbjct: 6 SGRSEWQQRERRR------YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQ 58
Query: 95 ISSLKKH 101
S L H
Sbjct: 59 RSHLIGH 65
Score = 23.6 bits (52), Expect = 9.8
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKR 74
+ CD C K + + L +H++ +KP + CD CGK + + L H R
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP------YKCDECGKAFIQRSHLIGHHR 67
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 31.6 bits (73), Expect = 0.015
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 25 CFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYE 84
C K + +K RH +P + C VCGK +K K L H + G +P YE
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRP------YGCGVCGKKFKMKHHLVGHMKIHTGIKP-YE 67
Query: 85 CDQCPHRTKHISSLKKHM 102
C+ C R S +H+
Sbjct: 68 CNICAKRFMWRDSFHRHV 85
Score = 30.9 bits (71), Expect = 0.032
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
+ C VC K++K K LV H K KP + C++C K + ++ H+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKP------YECNICAKRFMWRDSF--HRHVTSCT 89
Query: 80 EPKYECDQCPHRTKHISSL 98
+ YE + T S
Sbjct: 90 KS-YEAAKAEQNTTEASGP 107
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 30.5 bits (70), Expect = 0.019
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHM 102
F C+VC + + ++ L RH R ++P Y C C L +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHA 50
Score = 26.3 bits (59), Expect = 0.63
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKR 74
F C+VC + + + L RH ++ +KP + C +C + + + L RH +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP------YPCGLCNRAFTRRDLLIRHAQ 51
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 31.8 bits (71), Expect = 0.019
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGV 108
F C +C + L +H RY E C C S H+ KH +
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 30.9 bits (69), Expect = 0.033
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
F C C Y L H + + + + K+ L + E Q
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNET-GHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78
Query: 80 EPKYECDQCPHRTKHISSLKKHMA 103
+ +C C H + + L HM
Sbjct: 79 KV-LKCMYCGHSFESLQDLSVHMI 101
Score = 24.3 bits (52), Expect = 8.6
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 72 HKRYECGQEPKYECDQCPHRTKHISSLKKHM 102
+ G K+ C C + L HM
Sbjct: 10 YGSIFTG-ASKFRCKDCSAAYDTLVELTVHM 39
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 30.6 bits (68), Expect = 0.035
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 10/91 (10%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
+ C +C + H++ C C + + H+ +
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLC--------RNAAVCPYCSLRFFSPELKQEHESKC--E 66
Query: 80 EPKYECDQCPHRTKHISSLKKHMALKHGVES 110
K C +C K S+ +H H +
Sbjct: 67 YKKLTCLECMRTFKSSFSIWRHQVEVHNQNN 97
Score = 29.5 bits (65), Expect = 0.11
Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 40 KNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLK 99
S P ++ C +C G H+R C C R +
Sbjct: 3 SGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERL---CRNAAVCPYCSLRFFSPELKQ 59
Query: 100 KHMA 103
+H +
Sbjct: 60 EHES 63
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 30.6 bits (68), Expect = 0.088
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 82 KYECDQCPHRTKHISSLKKHMALKHGVES 110
Y C+ C R +S+L +H+ H ++
Sbjct: 116 SYVCNVCNARFSTMSALSEHLRSDHRDDA 144
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 29.9 bits (68), Expect = 0.13
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 57 DVCGKHYKYKKGLGRHKRYECGQEPK--YECDQCPHRTKHISSLKKHMALKH 106
+ C K + L RH++ G K C K + KH+A H
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFV---GKTWTLYLKHVAECH 188
Score = 24.9 bits (55), Expect = 6.6
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 59 CGKHYKYKKGLGRHKRYECGQEPKYECDQ--CPHRTKHISSLKKHM 102
CG Y L H G++P + C + C + L +H
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKP-FPCKEEGCEKGFTSLHHLTRHS 64
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 28.0 bits (62), Expect = 0.14
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC 88
+C++CGK ++ L RHK G++P Y
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPS 46
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 27.5 bits (62), Expect = 0.16
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 83 YECDQCPHRTKHISSLKKHM 102
Y C+ C R +H+ +LK H+
Sbjct: 12 YPCEICGTRFRHLQTLKSHL 31
Score = 24.4 bits (54), Expect = 3.1
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 54 FSCDVCGKHYKYKKGLGRHKR 74
+ C++CG +++ + L H R
Sbjct: 12 YPCEICGTRFRHLQTLKSHLR 32
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 28.6 bits (63), Expect = 0.21
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 71 RHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKH 106
H + E YEC C +T ++ H+ +H
Sbjct: 7 HHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH 42
Score = 26.7 bits (58), Expect = 0.99
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Query: 36 VRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRH---KRYECGQEPKYECDQCPHRT 92
+ H + Q+ + ++G + C C H + Y C +C T
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 93 KHISSLKKHMALKHGVES 110
K +L +H H E
Sbjct: 61 KRYDALSEHNLKYHPGEE 78
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 28.6 bits (65), Expect = 0.23
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC--DQCPHRTKHISSLKKHM 102
C CGK + L RH+ G++P ++C + C R +L+ H+
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTHV 84
Score = 27.5 bits (62), Expect = 0.67
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV--CGKHYKYKKGLGRHKRYEC 77
C C K + L RH+ +KP F C CGK + L H R
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKP------FQCTFEGCGKRFSLDFNLRTHVRIHT 88
Query: 78 GQEPKYEC--DQCPHRTKHISSLKKHM 102
G P Y C D C + ++LK H+
Sbjct: 89 GDRP-YVCPFDGCNKKFAQSTNLKSHI 114
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 27.4 bits (60), Expect = 0.25
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYE 84
++CD+CGK YK + GL H + E + E
Sbjct: 8 YACDICGKRYKNRPGLSYHYAHSHLAEEEGE 38
Score = 24.7 bits (53), Expect = 2.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQ 48
+ CD+C K YK + GL H +S + +
Sbjct: 8 YACDICGKRYKNRPGLSYHYAHSHLAEEE 36
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 28.4 bits (62), Expect = 0.26
Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 11 SVWQN---DSGMFTCDVC-FKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYK 66
WQ + G C C K GL +H + Q L C C K +K K
Sbjct: 13 EQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVC-----QKLQDALKCQHCRKQFKSK 67
Query: 67 KGLGRHKRYECGQEPK 82
GL H E +P
Sbjct: 68 AGLNYHTMAEHSAKPS 83
Score = 26.4 bits (57), Expect = 1.2
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 52 GLFSCDVCGK-HYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHG 107
G C C K GL +H + +C C + K + L H +H
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Score = 24.9 bits (53), Expect = 4.1
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDG 52
++ V Q C C K++K K GL H KP + +
Sbjct: 44 HMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAEA 87
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.26
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECD 86
F CD+CGK + + L RH ++P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP-SGPS 44
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 28.3 bits (64), Expect = 0.28
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC--DQCPHRTKHISSLKKHM 102
F C C + + L H R G++P + C C + L +H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRHH 116
Score = 26.3 bits (59), Expect = 1.4
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 59 CGKHYKYKKGLGRHKRYECGQEPKYECD--QCPHRTKHISSLKKHM 102
C K Y L H R G++P Y+CD C R LK+H
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQ 58
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.9 bits (64), Expect = 0.28
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 6 FLEYLSVWQNDSGMFTCDVCFKEYKYKR 33
+ + W S ++ FK+ + ++
Sbjct: 201 LNKKCTFWDAISKLYYVQFFFKQAEQEQ 228
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 27.5 bits (62), Expect = 0.39
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
Query: 20 FTCDV--CFKEYKYKRGLVRHKKNS-CKQKPQNLDGLFSCD--VCGKHYKYKKGLGRHKR 74
CD C + + ++ L HKK QK FSC CGK + +KK L H +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS------FSCPEPACGKSFNFKKHLKEHMK 61
Query: 75 YECGQEPKYECDQC 88
Y C+
Sbjct: 62 LHSDTRD-YICEFS 74
Score = 26.4 bits (59), Expect = 0.86
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 54 FSCDV--CGKHYKYKKGLGRHKRYECGQEPKYECDQ--CPHRTKHISSLKKHM 102
CD CG+ + ++ L HK+Y+ + + C + C LK+HM
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 27.6 bits (62), Expect = 0.44
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 54 FSC--DVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHM 102
+ C + C + L RH R G +P ++C C L HM
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALHM 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.47
Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 32/106 (30%)
Query: 1 MFFLFFLEY-LSVWQND--SGMFT---CDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLF 54
+F + + L ++ +F D F E K +RH + L+ L
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-----IRHDSTAWNASGSILNTLQ 525
Query: 55 SCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKK 100
+ K YK Y CD P + ++++
Sbjct: 526 --QL--KFYK-----------------PYICDNDPKYERLVNAILD 550
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 27.1 bits (61), Expect = 0.53
Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 9/85 (10%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV--CGKHYKYKKGLGRHKRYEC 77
C K Y L H + +KP + CD CG + L RH R
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKP------YHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 78 GQEPKYECDQCPHRTKHISSLKKHM 102
G P ++C +C L HM
Sbjct: 62 GHRP-FQCQKCDRAFSRSDHLALHM 85
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 27.9 bits (63), Expect = 0.55
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 22 CDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV--CGKHYKYKKGLGRHKRYECGQ 79
C + +K + LV H + +KP C C K Y + L H R G+
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKP------HKCTFEGCRKSYSRLENLKTHLRSHTGE 95
Query: 80 EPKYECDQ--CPHRTKHISSLKKHMALKH 106
+P Y C+ C + S KH H
Sbjct: 96 KP-YMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 26.8 bits (60), Expect = 1.1
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 9/57 (15%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYEC---GQEPKYECDQCPHRT-----KHISSLKKHM 102
D C + + ++ L H E ++ + C K L HM
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGGCSRELRPFKAQYMLVVHM 59
Score = 25.6 bits (57), Expect = 3.5
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 17/93 (18%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCK---QKPQNLDGLFSCDVCG-----KHYKYKKGLGR 71
D C +E+ + LV H + +K F C G + +K + L
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKE------FVCHWGGCSRELRPFKAQYMLVV 57
Query: 72 HKRYECGQEPKYECD--QCPHRTKHISSLKKHM 102
H R G++P ++C C + +LK H+
Sbjct: 58 HMRRHTGEKP-HKCTFEGCRKSYSRLENLKTHL 89
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 27.9 bits (62), Expect = 0.56
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 11/64 (17%)
Query: 9 YLSV----WQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYK 64
L V WQN F C V F ++ K Q + S + G+ +
Sbjct: 220 RLRVSATFWQNPRNHFRCQVQFYGLSEN---DEWTQDRAKPVTQIV----SAEAWGRSRQ 272
Query: 65 YKKG 68
+ G
Sbjct: 273 DRGG 276
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.1 bits (59), Expect = 0.63
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 15 NDSGMFTCDVC-FKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHK 73
D G +C C K GL +H +N CKQ+ F+C CGK + G+ H
Sbjct: 30 VDKGSVSCPTCQAVGRKTIEGLKKHMEN-CKQEM------FTCHHCGKQLRSLAGMKYHV 82
Query: 74 RYECGQEP 81
P
Sbjct: 83 MANHNSLP 90
Score = 26.0 bits (56), Expect = 1.6
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 52 GLFSCDVCGK-HYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHG 107
G SC C K +GL +H C QE + C C + + ++ +K H+ H
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHME-NCKQEM-FTCHHCGKQLRSLAGMKYHVMANHN 87
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 26.0 bits (58), Expect = 0.71
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G G++P Y C +C + S L KH
Sbjct: 1 GSSGSSGTGEKP-YNCKECGKSFRWASCLLKH 31
Score = 26.0 bits (58), Expect = 0.72
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYECDQ 87
C CGK +++ L +H+R G++P
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKP-SGPSS 45
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.74
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
CDVC K ++Y L H+R G++P
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKP-SGP 43
Score = 23.2 bits (51), Expect = 7.2
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G G++P Y+CD C ++ SSL H
Sbjct: 1 GSSGSSGTGEKP-YKCDVCHKSFRYGSSLTVH 31
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.84
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQ 87
+ CD CGK + L RH+R G++P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP-SGPSS 45
Score = 24.0 bits (53), Expect = 3.7
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G G++P Y CD C + L +H
Sbjct: 1 GSSGSSGSGEKP-YVCDYCGKAFGLSAELVRH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 0.87
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G G++P Y C++C H S L++H
Sbjct: 1 GSSGSSGTGEKP-YNCEECGKAFIHDSQLQEH 31
Score = 24.0 bits (53), Expect = 3.5
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C+ CGK + + L H+R G++P
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKP-SGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.2
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECD 86
+SC+VCGK + L +H R +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETL-SGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.3
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 37 RHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ KP + C+ CGK + L H+ G++P
Sbjct: 2 SSGSSGTGVKP------YMCNECGKAFSVYSSLTTHQVIHTGEKP-SGP 43
Score = 23.6 bits (52), Expect = 4.6
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G G +P Y C++C SSL H
Sbjct: 1 GSSGSSGTGVKP-YMCNECGKAFSVYSSLTTH 31
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 25.2 bits (56), Expect = 1.4
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
F C CGK ++ K L H+R G++
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKS-GPS 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.2 bits (56), Expect = 1.6
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C CGK +K K L H+R G++P
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKP-SGP 43
Score = 24.4 bits (54), Expect = 2.5
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G GQ P YEC +C K SSL H
Sbjct: 1 GSSGSSGTGQRP-YECIECGKAFKTKSSLICH 31
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 26.8 bits (59), Expect = 1.6
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 11/64 (17%)
Query: 9 YLSV----WQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYK 64
L V WQN F C V F ++ K Q + S + G+ +
Sbjct: 194 RLRVSATFWQNPRNHFRCQVQFYGLSEN---DEWTQDRAKPVTQIV----SAEAWGRADQ 246
Query: 65 YKKG 68
+ G
Sbjct: 247 DRGG 250
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.6
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
CDVCGK + L H+R G++P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP-SGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.6
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
CDVC K + + L +H+R G++P
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKP-SGP 43
Score = 24.0 bits (53), Expect = 4.5
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G G++P YECD C H +SL +H
Sbjct: 1 GSSGSSGTGEKP-YECDVCRKAFSHHASLTQH 31
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 1.7
Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 19/44 (43%)
Query: 66 KKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVE 109
KK K Y D P +L A+K +E
Sbjct: 23 KKLQASLKLYA----D----DSAP-------AL----AIKATME 47
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.8
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C VCGK ++ L +H G+ P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERP-SGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.9
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQ 87
F C+ CGK + L H+R G++P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP-SGPSS 45
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 24.8 bits (55), Expect = 2.0
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G G++P YEC++C S L H
Sbjct: 1 GSSGSSGSGEKP-YECNECGKAFIWKSLLIVH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.0
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C VCGK + +++ L H+R G++P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKP-SGP 43
Score = 24.0 bits (53), Expect = 4.1
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G G++P YEC C H SL H
Sbjct: 1 GSSGSSGTGEKP-YECSVCGKAFSHRQSLSVH 31
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.2
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQ 87
+ C C K + L +HKR G+
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERS-SGPSS 45
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.3
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C CGK + +K L H+R +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKH-SGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.3
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G G++P Y+C++C +H S L +H
Sbjct: 1 GSSGSSGTGEKP-YKCNECGKVFRHNSYLSRH 31
Score = 24.4 bits (54), Expect = 2.9
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 37 RHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ +KP + C+ CGK +++ L RH+R G++P
Sbjct: 2 SSGSSGTGEKP------YKCNECGKVFRHNSYLSRHQRIHTGEKP-SGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.4
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C+ CGK++ L H + ++
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKS-SGP 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.4
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C+ CGK Y K L H++ G+ P
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERP-SGP 43
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR
complex function; HET: ADP; 2.31A {Pyrococcus furiosus}
PDB: 3ur3_C 4doz_A
Length = 693
Score = 26.6 bits (57), Expect = 2.4
Identities = 15/107 (14%), Positives = 33/107 (30%), Gaps = 1/107 (0%)
Query: 5 FFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYK 64
+L++ +N + + K L K + + + C VCG++
Sbjct: 219 KWLKFAEKKENSRVLERIAIYPLLVKILDSLGERKVTEERFEKSEQLKGWKCHVCGENLA 278
Query: 65 YKKGLGRHKRYECGQEPKYE-CDQCPHRTKHISSLKKHMALKHGVES 110
+ H + + C C + + ++ K ES
Sbjct: 279 IFGDMYDHDNLKSLWLDEEPLCPMCLIKRYYPVWIRSKTGQKIRFES 325
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.4 bits (54), Expect = 2.4
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C+ CGK + ++ L H G++P
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKP-SGP 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.5 bits (54), Expect = 2.4
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKHM 102
G G++P ++C +C SL KH+
Sbjct: 1 GSSGSSGTGEKP-FQCKECGMNFSWSCSLFKHL 32
Score = 24.5 bits (54), Expect = 2.7
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQ 87
F C CG ++ + L +H R +P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDP-SGPSS 45
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.5
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C VCGK + + L +H++ G++P
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKP-SGP 43
Score = 23.2 bits (51), Expect = 8.3
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G G+ P Y C C S+L KH
Sbjct: 1 GSSGSSGTGERP-YICTVCGKAFTDRSNLIKH 31
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.8
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C CGK + +K L H++ G+
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERH-SGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.8
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQ 87
F C CGK + K L H++ G++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP-SGPSS 45
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 26.1 bits (56), Expect = 2.9
Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 10/87 (11%)
Query: 3 FLFFLEYLSVWQNDSGMFTCDV---CFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC 59
LF + + +D+G + C K V + + F C
Sbjct: 183 LLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHC--- 239
Query: 60 GKHYKYKKGLGRHKRYECGQEPKYECD 86
+ ++ C Q CD
Sbjct: 240 ----ALGPEVANVAKFLCRQSSGENCD 262
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.9
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQ 87
+ C CGK + L H+R G P
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRP-SGPSS 45
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 24.4 bits (54), Expect = 3.1
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G G++P +EC +C S L H
Sbjct: 1 GSSGSSGTGEKP-FECAECGKSFSISSQLATH 31
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.1
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C+ CGK ++ + L H+ G++P
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKP-SGP 43
Score = 23.3 bits (51), Expect = 7.6
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G G++P Y+C++C + SSL H
Sbjct: 1 GSSGSSGTGEKP-YKCNECGKAFRARSSLAIH 31
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.1
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
F C CGK + GL +H+R G++P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP-SGP 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 24.0 bits (53), Expect = 3.3
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
F C C K + K L H++ ++P
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKP-SGP 41
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.3
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C+ CGK Y + L H+R G++
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKT-SGP 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.3
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
F C CGK + +K L H++ G+ P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP-SGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 3.4
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C CGK + L +H ++P
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKP-SGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 24.0 bits (53), Expect = 3.5
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEP 81
C CG+ + K L +H+R G++P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 24.0 bits (53), Expect = 3.5
Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYECDQ 87
C C + L H+ G++P
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKP-SGPSS 45
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 24.5 bits (54), Expect = 3.5
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 54 FSCDVCGKHYKYKKGLGRH-KRYECGQEPKYECDQC 88
+ C CGK + L H K+ + P ++C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQVW 47
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 3.7
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C+ CGK + L H R G++P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP-SGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 3.7
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C+ CGK + K L H+R G++P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP-SGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 3.7
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
F C+ CGK + + L H R ++
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKS-SGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 3.7
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C CGK + K L +H+R G++P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP-SGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 3.8
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C+ CGK + L RH+R G +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP-SGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 3.8
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
F C+ C K + L H+R G++P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP-SGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.0 bits (53), Expect = 3.8
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C+ C K + K L H+R G+
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESG-PSS 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.1
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C+ CGK + L RH+R G++P
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKP-SGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.1
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G G++P YEC+QC SSL H
Sbjct: 1 GSSGSSGTGEKP-YECNQCGKAFSVRSSLTTH 31
Score = 24.0 bits (53), Expect = 4.4
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C+ CGK + + L H+ G++P
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKP-SGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.3
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C VC K + K L +H++ G++P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP-SGP 43
Score = 22.9 bits (50), Expect = 9.1
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G G++P YEC C + L +H
Sbjct: 1 GSSGSSGTGEKP-YECKVCSKAFTQKAHLAQH 31
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.4
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C CGK ++ L RH+ G++P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP-SGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.4
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C+ CGK + L RH+R G++P
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKP-SGP 43
Score = 23.6 bits (52), Expect = 4.6
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G G++P Y+C++C S L +H
Sbjct: 1 GSSGSSGTGEKP-YKCNECGKAFSQTSKLARH 31
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.4
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C+ CGK + L +H+R G++P
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKP-SGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.7 bits (52), Expect = 4.5
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C CGK + +H+R GQ P
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRP-SGP 43
>2y8y_A CSE3, TTHB192; hydrolase-RNA complex, ferredoxin-like; HET: DG;
1.44A {Thermus thermophilus} PDB: 2y8w_A* 2y9h_A* 1wj9_A
Length = 215
Score = 25.4 bits (55), Expect = 4.5
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 65 YKKGLGRHKRYECG 78
++G+G K G
Sbjct: 196 LRRGVGPGKALGLG 209
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.5
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
F C CGK Y + L +H+R G++P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP-SGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.7
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 37 RHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ +KP + C+ CGK + L RH+ G++P
Sbjct: 2 SSGSSGTGEKP------YKCNECGKVFTQNSHLVRHRGIHTGEKP-SGP 43
Score = 23.2 bits (51), Expect = 8.9
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G G++P Y+C++C S L +H
Sbjct: 1 GSSGSSGTGEKP-YKCNECGKVFTQNSHLVRH 31
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.7 bits (50), Expect = 4.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 15 NDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQK 46
+ +FTC+ C K +K+K L H + +K
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 22.9 bits (48), Expect = 9.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 53 LFSCDVCGKHYKYKKGLGRHKRYECGQE 80
+F+C+ C K +K+K L H R ++
Sbjct: 9 IFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 4.7
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G G++P +EC +C S L H
Sbjct: 1 GSSGSSGTGEKP-HECRECGKSFSFNSQLIVH 31
Score = 22.9 bits (50), Expect = 9.5
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C CGK + + L H+R G+ P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENP-SGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 4.9
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C+ CGK ++ L H+ G++P
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKP-SGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 4.9
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
F C C K + K L H+R G++P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP-SGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 4.9
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
++C CGK + L +H+R G++P
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP-SGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 5.0
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C+ CGK + L H+R G +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP-SGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 23.7 bits (52), Expect = 5.0
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQ 87
+ C C K + K L H+R ++P
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKP-SGPSS 45
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 5.0
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C+ CGK + L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP-SGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 5.1
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C CGK + K L H+R G++P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP-SGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 5.1
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C+ CGK + L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP-SGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.7 bits (52), Expect = 5.3
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C CGK + K L H R G++P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP-SGP 43
Score = 22.9 bits (50), Expect = 8.6
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G G++P Y C +C S L H
Sbjct: 1 GSSGSSGAGEKP-YGCSECGKAFSSKSYLIIH 31
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 5.4
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C+ CGK + K L RH+R G++P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP-SGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 23.6 bits (52), Expect = 5.5
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C+ CGK + L +H++ G++P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP-SGP 43
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 25.2 bits (54), Expect = 5.5
Identities = 6/62 (9%), Positives = 14/62 (22%), Gaps = 3/62 (4%)
Query: 25 CFKEYKYKRGLVR--HKKNSCKQKPQNLDGLFSCDVCG-KHYKYKKGLGRHKRYECGQEP 81
+ Y + + + + C C + + K CG +
Sbjct: 214 AYSHLHYFKLFFVKERGVEKVDKLIEQFGYIQYCFNCMNREVVTDLYKFKEKCPHCGSKF 273
Query: 82 KY 83
Sbjct: 274 HI 275
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 5.6
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C CGK + + L +H++ Q+P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP-SGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 6.0
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
F C CGK ++ L H R G++P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP-SGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 23.6 bits (52), Expect = 6.2
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
F C CGK + + L H + G++P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP-SGP 43
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 25.0 bits (54), Expect = 6.4
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 11/64 (17%)
Query: 9 YLSV----WQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYK 64
L V WQN F C V F ++ K Q + S + G+ +
Sbjct: 193 RLRVSATFWQNPRNHFRCQVQFYGLSEN---DEWTQDRAKPVTQIV----SAEAWGRADQ 245
Query: 65 YKKG 68
+ G
Sbjct: 246 DRGG 249
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 25.0 bits (54), Expect = 6.4
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 4 LFFLEYLSVWQNDSGMFTC 22
L LS+ + TC
Sbjct: 163 LSVAVDLSLPKPWHLPVTC 181
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 23.3 bits (51), Expect = 6.5
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 72 HKRYECGQEPKYECDQCPHRTKHISSLKKHM 102
G++P Y+C+ C R ++ L+ H+
Sbjct: 2 SSGSSGGEKP-YKCETCGARFVQVAHLRAHV 31
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 6.7
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C +CGK + K L H++ G++P
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKP-SGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 6.8
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C CGK + K GL H++ G+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERH-SGP 43
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 23.2 bits (49), Expect = 7.1
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 80 EPKYECDQCPHRTKHISSLKKHM 102
E + C CP R++ S++ KH+
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHL 23
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 23.3 bits (51), Expect = 7.1
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 37 RHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ ++ C CGK + +H+R G++P
Sbjct: 2 SSGSSGHGERG------HRCSDCGKFFLQASNFIQHRRIHTGEKP-SGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 7.3
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECD 86
+ C CGK YK + L H+R G++
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKL-SGPS 44
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 7.3
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
F C+ CGK + L H+R G++P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP-SGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 23.2 bits (51), Expect = 7.7
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKH 101
G G +P Y C++C + S L H
Sbjct: 1 GSSGSSGTGMKP-YVCNECGKAFRSKSYLIIH 31
>3qrp_A Putative uncharacterized protein TTHB192; RAMP domain, protein-RNA
complex, RNA binding protein-RNA CO; HET: PGP U5P; 2.35A
{Thermus thermophilus HB8} PDB: 3qrq_A 3qrr_A*
Length = 267
Score = 24.7 bits (53), Expect = 7.8
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 65 YKKGLGRHKRYECG 78
++G+G K G
Sbjct: 248 LRRGVGPGKALGLG 261
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 8.0
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C CGK + K L H+R G++P
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKP-SGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 23.3 bits (51), Expect = 8.2
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C C K + K L H+R G +P
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKP-SGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 22.9 bits (50), Expect = 8.3
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 72 HKRYECGQEPKYECDQCPHRTKHISSLKKHM 102
G++P Y CDQC SL H+
Sbjct: 2 SSGSSGGEKP-YRCDQCGKAFSQKGSLIVHI 31
Score = 22.9 bits (50), Expect = 9.5
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEP 81
+ CD CGK + K L H R G P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 24.8 bits (53), Expect = 8.7
Identities = 1/24 (4%), Positives = 4/24 (16%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYEC 77
+ + + L
Sbjct: 209 LQREKSEQVLDNPEDLRGPIHLSV 232
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 22.9 bits (50), Expect = 8.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 54 FSCDVCGKHYKYKKGLGRHKR 74
+CD CGK++ Y L H+R
Sbjct: 13 HTCDECGKNFCYISALRIHQR 33
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 22.8 bits (50), Expect = 8.9
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
+ C CGK + L +H+R G++P
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP-SGP 43
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 22.9 bits (50), Expect = 9.0
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKH 106
G G++P YEC +C +SL +H H
Sbjct: 1 GSSGSSGTGKKP-YECIECGKAFIQNTSLIRHWRYYH 36
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 22.9 bits (48), Expect = 9.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 83 YECDQCPHRTKHISSLKKHMALKHGVE 109
Y+C C R+ S+LK H+ KH E
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHSKE 29
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q*
1s1h_Q
Length = 156
Score = 24.4 bits (53), Expect = 9.2
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 61 KHYKYKKGLGRHKRYECGQEPKYEC 85
KY + RHK P +
Sbjct: 93 YIPKYNRYEKRHKNVPVHVSPAFRV 117
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 22.9 bits (50), Expect = 9.3
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECD 86
F C+ CGK + H+R G++P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP-SGPS 44
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
{Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Length = 279
Score = 24.6 bits (54), Expect = 9.5
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 46 KPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHR 91
+P+ + +F C C +H+ + EP C +C R
Sbjct: 127 RPRIVKAVFECRGCMRHHAVTQSTNMI------TEPS-LCSECGGR 165
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 23.0 bits (50), Expect = 9.8
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEP 81
+ C CGK + + L H+R P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 10.0
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 56 CDVCGKHYKYKKGLGRHKRYECGQEPKYEC 85
C CGK + K L H+R G+ P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENP-SGP 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.466
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,657,307
Number of extensions: 82023
Number of successful extensions: 975
Number of sequences better than 10.0: 1
Number of HSP's gapped: 856
Number of HSP's successfully gapped: 354
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)