RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12016
(111 letters)
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 30.1 bits (68), Expect = 0.006
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 70 GRHKRYECGQEPKYECDQCPHRTKHISSLKKHM 102
GR + + + Y+CD+C H S L KH
Sbjct: 1 GRSEWQQRERRR-YKCDECGKSFSHSSDLSKHR 32
Score = 21.7 bits (46), Expect = 9.4
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 37 RHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKR 74
R + +++ + CD CGK + + L +H+R
Sbjct: 2 RSEWQQRERRR------YKCDECGKSFSHSSDLSKHRR 33
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 28.5 bits (63), Expect = 0.037
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHM 102
+ C CGK + +K RH Y C C + K L HM
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHM 50
Score = 23.9 bits (51), Expect = 2.2
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKR 74
+ C C K + +K RH +P + C VCGK +K K L H +
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHLGLRP------YGCGVCGKKFKMKHHLVGHMK 51
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 28.0 bits (63), Expect = 0.042
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 83 YECDQCPHRTKHISSLKKHMALKHGVE 109
YEC C R ++K H+ KH
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTEN 35
Score = 22.2 bits (48), Expect = 4.6
Identities = 3/21 (14%), Positives = 7/21 (33%)
Query: 54 FSCDVCGKHYKYKKGLGRHKR 74
+ C +C + + H
Sbjct: 9 YECYICHARFTQSGTMKMHIL 29
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 26.5 bits (59), Expect = 0.14
Identities = 6/24 (25%), Positives = 7/24 (29%)
Query: 83 YECDQCPHRTKHISSLKKHMALKH 106
Y C C L H+ H
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVH 29
Score = 25.0 bits (55), Expect = 0.55
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECD 86
+ C CGK + L H + E ++C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 26.4 bits (59), Expect = 0.16
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 83 YECDQCPHRTKHISSLKKHM 102
Y C +C S L +H
Sbjct: 8 YGCVECGKAFSRSSILVQHQ 27
Score = 24.1 bits (53), Expect = 0.86
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 54 FSCDVCGKHYKYKKGLGRHKR 74
+ C CGK + L +H+R
Sbjct: 8 YGCVECGKAFSRSSILVQHQR 28
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 25.8 bits (57), Expect = 0.28
Identities = 7/28 (25%), Positives = 8/28 (28%)
Query: 80 EPKYECDQCPHRTKHISSLKKHMALKHG 107
E Y C C + L H H
Sbjct: 6 EKPYACSHCDKTFRQKQLLDMHFKRYHD 33
Score = 22.7 bits (49), Expect = 3.2
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 54 FSCDVCGKHYKYKKGLGRHKR 74
++C C K ++ K+ L H +
Sbjct: 9 YACSHCDKTFRQKQLLDMHFK 29
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 24.6 bits (54), Expect = 0.54
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 83 YECDQCPHRTKHISSLKKHM 102
+ C +CP R L KH+
Sbjct: 3 FACPECPKRFMRSDHLSKHI 22
Score = 22.7 bits (49), Expect = 3.1
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 54 FSCDVCGKHYKYKKGLGRHKR 74
F+C C K + L +H +
Sbjct: 3 FACPECPKRFMRSDHLSKHIK 23
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 25.1 bits (55), Expect = 0.56
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 72 HKRYECGQEPKYECDQCPHRTKHISSLKKHM 102
R G +P ++C C L H
Sbjct: 2 STRGSTGIKP-FQCPDCDRSFSRSDHLALHR 31
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 26.3 bits (58), Expect = 0.78
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 19 MFTCDVCFKEYKYKRGLVRHKKNSCKQKP 47
++ D + + K+ R++K + P
Sbjct: 34 IYIDDFTLQYFGSKKQYERYRKKCTLRHP 62
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 264
Score = 26.1 bits (57), Expect = 0.88
Identities = 6/38 (15%), Positives = 17/38 (44%)
Query: 24 VCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGK 61
+ + +Y ++ K C++ +++ L S +V
Sbjct: 217 MYYLQYPFEPFFPESCKIECQKLGIDIEMLKSFNVEKD 254
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 24.1 bits (53), Expect = 1.1
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 83 YECDQCPHRTKHISSLKKHM 102
++C C L H+
Sbjct: 4 FQCRICMRNFSRSDHLTTHI 23
Score = 22.6 bits (49), Expect = 3.3
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 54 FSCDVCGKHYKYKKGLGRHKR 74
F C +C +++ L H R
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR 24
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 24.0 bits (51), Expect = 1.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 83 YECDQCPHRTKHISSLKKHMALKHGVE 109
Y+C C R+ S+LK H+ KH E
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHSKE 29
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 23.7 bits (52), Expect = 1.4
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 83 YECDQCPHRTKHISSLKKHM 102
+ C+ C LK+H
Sbjct: 3 FVCEVCTRAFARQEHLKRHY 22
Score = 23.4 bits (51), Expect = 2.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 54 FSCDVCGKHYKYKKGLGRHKR 74
F C+VC + + ++ L RH R
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR 23
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 23.5 bits (51), Expect = 2.1
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 55 SCDVCGKHYKYKKGLGRHKRYECGQEPKYECD 86
CGK + +KK L H + Y C+
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRD-YICE 35
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 24.8 bits (54), Expect = 2.3
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 19 MFTCDVCFKEYKYKRGLVRHKKNSCKQKP 47
++ C+ C K KY++ H ++P
Sbjct: 31 LWLCEYCLKYMKYEKSYRFHLGQCQWRQP 59
>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 24.5 bits (52), Expect = 2.5
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 6 FLEYLSVWQNDSGMFTCDV 24
L SV +DSG ++C
Sbjct: 61 RLLLRSVQLHDSGNYSCYR 79
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 270
Score = 24.8 bits (54), Expect = 2.9
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 19 MFTCDVCFKEYKYKRGLVRHKKNSCKQKP 47
++ C+ C K K + L +H K P
Sbjct: 31 LYLCEFCLKYMKSRTILQQHMKKCGWFHP 59
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 23.1 bits (49), Expect = 3.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 55 SCDVCGKHYKYKKGLGRHKRYECGQEP 81
+C++CGK ++ L RHK G++P
Sbjct: 7 ACEICGKIFRDVYHLNRHKLSHSGEKP 33
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 29
Score = 22.9 bits (49), Expect = 3.2
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 83 YEC--DQCPHRTKHISSLKKHMALKHG 107
Y C C R SSL+KH+ HG
Sbjct: 3 YVCKLPGCTKRYTDPSSLRKHVKTVHG 29
>d2ghfa2 g.37.1.1 (A:9-44) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 22.8 bits (48), Expect = 3.8
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 79 QEPKYECDQCPHRTKHISSLKKHMALKH 106
E YEC C +T ++ H+ +H
Sbjct: 7 VEGGYECKYCTFQTPDLNMFTFHVDSEH 34
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 22.3 bits (47), Expect = 3.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 19 MFTCDVCFKEYKYKRGLVRHKK 40
++ C CFKE+ K + H K
Sbjct: 1 VYPCPFCFKEFTRKDNMTAHVK 22
>d1wj9a2 d.58.53.1 (A:88-211) Hypothetical protein TTHB192 {Thermus
thermophilus [TaxId: 274]}
Length = 124
Score = 24.1 bits (52), Expect = 4.1
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 65 YKKGLGRHKRYECG 78
++G+G K G
Sbjct: 105 LRRGVGPGKALGLG 118
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 22.0 bits (47), Expect = 5.9
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 54 FSCDVCGKHYKYKKGLGRHKR 74
F C +C + K RH +
Sbjct: 8 FVCRICLSAFTTKANCARHLK 28
Score = 21.6 bits (46), Expect = 9.2
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 80 EPKYECDQCPHRTKHISSLKKHM 102
+ + C C ++ +H+
Sbjct: 5 KRPFVCRICLSAFTTKANCARHL 27
>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a,
CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 107
Score = 23.1 bits (49), Expect = 7.0
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 11 SVWQNDSGMFTCDVCFKEYKYKRGLVR 37
+ D G++T D+ + Y+ + VR
Sbjct: 77 MITMKDMGVYTLDMTDENYRRTQATVR 103
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 21.8 bits (47), Expect = 7.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 54 FSCDVCGKHYKYKKGLGRHKR 74
+ C CGK + GL H+R
Sbjct: 3 YKCLECGKAFSQNSGLINHQR 23
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 21.9 bits (46), Expect = 7.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 83 YECDQCPHRTKHISSLKKHMALKHG 107
++C+ C TK S+L KHM HG
Sbjct: 3 FKCNYCSFDTKQPSNLSKHMKKFHG 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.466
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 437,278
Number of extensions: 18974
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 109
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.0 bits)