BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12018
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYR-TKQKELGWESLKPNAYGMYVC 93
+AC CGK + +L H++ G++P Y+CP+C + +K+L Y C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80
Query: 94 DICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTH 138
CGK + + L H++ G++P + CP+C Q A+L+ H
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAH 124
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQK-ELGWESLKPNAYGMYVC 93
+ C CGK + ++L RH++ G++P Y+CP+C Q+ L Y C
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAHQRTHTGEKPYAC 108
Query: 94 DICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTH 138
CGK + L H++ G++P ++CP+C ++ NL TH
Sbjct: 109 PECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTH 152
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQ-KELGWESLKPNAYGMYVC 93
+ C CGK + NL H++ G++P Y CP+C Q L Y C
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
Query: 94 DICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTH 138
CGK + + L+ H++ G++P ++CP+C ++ L H
Sbjct: 137 PECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVH 180
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYR-TKQKELGWESLKPNAYGMYVC 93
+AC CGK + +L H++ G++P Y+CP+C +++ L Y C
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Query: 94 DICGKVYQHKRTLYRHKKDECGQ 116
CGK + + L H++ G+
Sbjct: 165 PECGKSFSRRDALNVHQRTHTGK 187
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGM---Y 91
AC++CGK ++ +L RHK G++P Y CP C R K+K+ ++ + + Y
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 92 VCDICGKVYQHKRTLYRHKK 111
+C CGK + L H K
Sbjct: 67 ICQSCGKGFSRPDHLNGHIK 86
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 92 VCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLIIKHDSV 146
C+ICGK+++ L RHK G++P + CP C R K+K + H+ SV
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDGSV 62
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 37 CDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYG----MYV 92
C C K++ L H + G++P ++CP+C +KE E N ++
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 93 CDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLIIKHD 144
C +C + ++ + L H G+ P ++C C + QK +L++H+I H
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLHS 119
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYR-TKQKELGWESLKPNAYGMYVC 93
+ C CGK + NL +H++ G++P Y+CP+C ++ +L Y C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKP-YKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 94 DICGKVYQHKRTLYRHKK 111
CGK + L RH++
Sbjct: 64 PECGKSFSRSDHLSRHQR 81
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 86 NAYGMYVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLIIKHD 144
+ G + C++CGK + K L H + G +P ++C C Y A ++L HL I D
Sbjct: 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSD 61
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 29/107 (27%)
Query: 33 GKFACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYV 92
G C+VCGK + L H + G +P Y+C C Y
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSS--------------- 50
Query: 93 CDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHL 139
+L +H + + P F+C CPY ++ + L HL
Sbjct: 51 ------------SLNKHLRIHSDERP-FKCQICPYASRNSSQLTVHL 84
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 35 FACDV--CGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYR-TKQKELGWESLKPNAYGMY 91
+AC V C + + NL H + GQ+P +QC C ++Q L +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Query: 92 VCDICGKVYQHKRTLYRHKK 111
CDICG+ + T RH K
Sbjct: 64 ACDICGRKFATLHTRTRHTK 83
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 8 LRGKSRVLHWNSFMSWEGPFKPKLYGKFACDVCGKEYQYYRNLYRHKKFECGQE 61
+R S+ N+ + KP FACD+CG+++ RH K Q+
Sbjct: 41 MRNFSQQASLNAHIRTHTGEKP-----FACDICGRKFATLHTRTRHTKIHLRQK 89
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLII 141
Y CD CGK + H L +H++ G++P ++C +C Q+++L H +
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGHHRV 68
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 34 KFACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQC 69
++ CD CGK + + +L +H++ G++P Y+C +C
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDEC 52
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLII 141
+ C+ CGK Y+ L RH++ G PR CP+C + ++ + HL +
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPR-SCPECGKCFRDQSEVNRHLKV 54
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQC 69
F C+ CGK Y+ L RH++ G PR CP+C
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPR-SCPEC 38
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 35 FACDV--CGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYR-TKQKELGWESLKPNAYGMY 91
+AC V C + + NL RH + GQ+P +QC C ++ L +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 92 VCDICGKVYQHKRTLYRHKK 111
CDICG+ + RH K
Sbjct: 64 ACDICGRKFARSDERKRHTK 83
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 8 LRGKSRVLHWNSFMSWEGPFKPKLYGKFACDVCGKEYQYYRNLYRHKKFECGQE 61
+R SR H + + KP FACD+CG+++ RH K Q+
Sbjct: 41 MRNFSRSDHLTTHIRTHTGEKP-----FACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 93 CDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLIIKH 143
C CGK ++ L H + G++P ++C C Y A QK +L+ HL H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQK-ELGWESLKPNAYGMYVC 93
F C +CGK ++ L H P Y C C R QK ++ + + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 94 DICGKVYQHKRTLYRHKKDECG 115
+CGK + L H + G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLII 141
+ C ICGK ++ TL H P + C C R QK+++K H I
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFI 51
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLII 141
Y CD C +++K L HK G++P ++C C + + ANLKTH I
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRI 67
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 28/84 (33%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCD 94
+ CD C ++Y NL HK G++P Y C+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP----------------------------YRCN 49
Query: 95 ICGKVYQHKRTLYRHKKDECGQEP 118
ICG + L H + G++P
Sbjct: 50 ICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 35 FACDV--CGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYR-TKQKELGWESLKPNAYGMY 91
+AC V C + + +L RH + GQ+P +QC C ++ L +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 92 VCDICGKVYQHKRTLYRHKK 111
CDICG+ + RH K
Sbjct: 64 ACDICGRKFARSDERKRHTK 83
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 8 LRGKSRVLHWNSFMSWEGPFKPKLYGKFACDVCGKEYQYYRNLYRHKKFECGQE 61
+R SR H + + KP FACD+CG+++ RH K Q+
Sbjct: 41 MRNFSRSDHLTTHIRTHTGEKP-----FACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 33.1 bits (74), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 61 EPR-YQCPQ--CPYRTKQKELGWESLKPNAYGMYVCDICGKVYQHKRTLYRHKKDECGQE 117
EPR CP C + + L + ++VC CGK + L RH+ G++
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 118 PRFQCP--QCPYRAKQKANLKTHLII 141
P FQC C R NL+TH+ I
Sbjct: 62 P-FQCTFEGCGKRFSLDFNLRTHVRI 86
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 35 FACDV--CGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGM-- 90
+AC V C + + NL H + GQ+P +QC C R + G G
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKP-FQCRIC-MRNFSQHTGLNQHIRTHTGEKP 62
Query: 91 YVCDICGKVYQHKRTLYRHKK 111
+ CDICG+ + T RH K
Sbjct: 63 FACDICGRKFATLHTRDRHTK 83
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQE 61
FACD+CG+++ RH K Q+
Sbjct: 63 FACDICGRKFATLHTRDRHTKIHLRQK 89
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 32.7 bits (73), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 35 FACDV--CGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYR-TKQKELGWESLKPNAYGMY 91
+AC V C + + +L RH + GQ+P +QC C ++ L +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 92 VCDICGKVYQHKRTLYRHKK 111
CDICG+ + RH K
Sbjct: 64 ACDICGRKFARSDERKRHTK 83
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 8 LRGKSRVLHWNSFMSWEGPFKPKLYGKFACDVCGKEYQYYRNLYRHKKFECGQE 61
+R SR H + + KP FACD+CG+++ RH K Q+
Sbjct: 41 MRNFSRSDHLTTHIRTHTGEKP-----FACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 32.7 bits (73), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 35 FACDV--CGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYR-TKQKELGWESLKPNAYGMY 91
+AC V C + + L RH + GQ+P +QC C ++ L +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 92 VCDICGKVYQHKRTLYRHKK 111
CDICG+ + RH K
Sbjct: 64 ACDICGRKFARSDERKRHTK 83
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 8 LRGKSRVLHWNSFMSWEGPFKPKLYGKFACDVCGKEYQYYRNLYRHKKFECGQE 61
+R SR H + + KP FACD+CG+++ RH K Q+
Sbjct: 41 MRNFSRSDHLTTHIRTHTGEKP-----FACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 32.7 bits (73), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 35 FACDV--CGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYR-TKQKELGWESLKPNAYGMY 91
+AC V C + + L RH + GQ+P +QC C ++ L +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 92 VCDICGKVYQHKRTLYRHKK 111
CDICG+ + RH K
Sbjct: 64 ACDICGRKFARSDERKRHTK 83
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 8 LRGKSRVLHWNSFMSWEGPFKPKLYGKFACDVCGKEYQYYRNLYRHKKFECGQE 61
+R SR H + + KP FACD+CG+++ RH K Q+
Sbjct: 41 MRNFSRSDHLTTHIRTHTGEKP-----FACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 32.3 bits (72), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 35 FACDV--CGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYR-TKQKELGWESLKPNAYGMY 91
+AC V C + + L RH + GQ+P +QC C ++ L +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 92 VCDICGKVYQHKRTLYRHKK 111
CDICG+ + RH K
Sbjct: 63 ACDICGRKFARSDERKRHTK 82
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 8 LRGKSRVLHWNSFMSWEGPFKPKLYGKFACDVCGKEYQYYRNLYRHKKFECGQ 60
+R SR H + + KP FACD+CG+++ RH K Q
Sbjct: 40 MRNFSRSDHLTTHIRTHTGEKP-----FACDICGRKFARSDERKRHTKIHLRQ 87
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 32.3 bits (72), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 35 FACDV--CGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYR-TKQKELGWESLKPNAYGMY 91
+AC V C + + L RH + GQ+P +QC C ++ L +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 92 VCDICGKVYQHKRTLYRHKK 111
CDICG+ + RH K
Sbjct: 64 ACDICGRKFARSDERKRHTK 83
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y+C +CGK + + L +H+K G++P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
+ C VCGK + NL +H+K G++P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 120 FQCPQCPYRAKQKANLKTHLIIKH 143
+QC C YR+ +NLKTH+ KH
Sbjct: 3 YQCQYCEYRSADSSNLKTHIKTKH 26
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.23, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
++C CGKV+ HK L H+K G+ P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
F C CGK + + NL H+K G+ P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C +CGK + H+++L H++ G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
+ C VCGK + + ++L H++ G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C+ CGKV++H L RH++ G++P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
+ C+ CGK +++ L RH++ G++P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
YVCD CGK + L RH++ G++P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
+ CD CGK + L RH++ G++P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
+ CDVCGKE+ +L H++ G++P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y CD+CGK + L H++ G++P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYR 72
+ C VCGK+++ +L H K G +P Y+C C R
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKR 74
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLI 140
Y C +CGK ++ K L H K G +P ++C C R + + H+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSFHRHVT 86
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 90 MYVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLII 141
+Y C CGK + HK RH G P + C C + K K +L H+ I
Sbjct: 10 LYPCQ-CGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKI 59
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 120 FQCPQCPYRAKQKANLKTHLIIKH 143
+QC C +R+ +NLKTH+ KH
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKH 26
>pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1210
Score = 30.0 bits (66), Expect = 0.54, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 86 NAYGMYVCDICG--KVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAK 130
+AY + VCDICG + +K+ Y + C RF PY AK
Sbjct: 1145 DAYRVIVCDICGLIAIASYKKDSYECR--SCQNRTRFSQVYLPYAAK 1189
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 59 GQEPRYQCPQCPYRTKQKELGWESLK----PNAY-GMYVCDICGKVYQHKRTLYRHKKDE 113
G++P Y C C +QK+L K PN +VC CGK + + T+ RH +
Sbjct: 12 GEKP-YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70
Query: 114 CGQE 117
G +
Sbjct: 71 AGPD 74
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 29.6 bits (65), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 3 SLNSPLRGKSRVLHWNSFMSWEGPFKPKLYGKFACDVCGK 42
+L+ + G S VLH +FMSW + ++ FA +V G
Sbjct: 70 ALSDAIMGVSAVLHLGAFMSWAPADRDRM---FAVNVEGT 106
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 120 FQCPQCPYRAKQKANLKTHL 139
++CPQC Y + KANL HL
Sbjct: 10 YKCPQCSYASAIKANLNVHL 29
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y CD+C K + H +L +H++ G++P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
+ CDVC K + ++ +L +H++ G++P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 29.3 bits (64), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTH 138
Y C CGK + L +H++ G++P ++C +C Q + L H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINH 61
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQC 69
+ C CGK + L +H++ G++P Y+C +C
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLEC 48
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 28.9 bits (63), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 92 VCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQ 124
C+ICGK+++ L RHK G++P P
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 34 KFACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQ 68
+ AC++CGK ++ +L RHK G++P P
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y+C+ CGK + K L RH++ G++P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
+ C+ CGK + +L RH++ G++P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 30 KLYGKFACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQC--PYRTKQKELGWESLKPNA 87
K +F C CG+ + NL H++ + P Y C C +R +Q L +
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFR-RQDHLRDHRYIHSK 70
Query: 88 YGMYVCDICGKVYQHKRTLYRHK 110
+ C CGK + RTL HK
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHK 93
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 74 KQKELGWESLKPNAYGMYVCDI--CGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQ 131
K L S K Y CD C + + L RH++ G +P FQC C + +
Sbjct: 20 KLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSR 78
Query: 132 KANLKTHL 139
+LKTH
Sbjct: 79 SDHLKTHT 86
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
+ CDVC K ++Y +L H++ G++P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 120 FQCPQCPYRAKQKANLKTHLIIKH 143
+QC C R+ +NLKTH+ KH
Sbjct: 3 YQCQYCELRSADSSNLKTHIKTKH 26
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 93 CDI--CGKVYQHKRTLYRHKKDECGQEPRFQCPQ--CPYRAKQKANLKTHLIIKHDS 145
CD CG+++ +++ L HKK + + F CP+ C K +LK H+ + D+
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT 66
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 120 FQCPQCPYRAKQKANLKTHLIIKH 143
+QC C R+ +NLKTH+ KH
Sbjct: 3 YQCQYCEXRSADSSNLKTHIKTKH 26
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPR 63
+ C+ CGK + Y +L H+ G++P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPS 41
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C+ CGK + K L H++ G++P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPR-FQCPQCPYRAKQKANLKTHLIIKH 143
Y C +C +VY H RH + + + CP C +K N+ H+ I H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C CGK + K TL H++ G++P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C ICGK + K L+ H++ G++P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
+ C +CGK + L+ H++ G++P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
+ C CGK + K TL H+K G++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
F C CGK + L H+K G++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C+ CGKV+ L +H+K G++P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C+ CGKV+ L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C+ CGKV+ L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
+ C+ CGK ++ + NL H+ G++P
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C+ CGKV+ L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2ELM|A Chain A, Solution Structure Of The 10th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 37
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 120 FQCPQCPYRAKQKANLKTHLIIKHDSVL 147
+ C QC Y + K LK H+I KH ++L
Sbjct: 10 YYCSQCHYSSITKNCLKRHVIQKHSNIL 37
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C+ICG ++H +TL H + G P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C+ CGKV+ L RH++ G +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
+ C CGK + NL+ H+K G++P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C CGK + + L+ H+K G++P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|4A17|Y Chain Y, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2.
pdb|4A1A|Y Chain Y, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
pdb|4A1C|Y Chain Y, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
pdb|4A1E|Y Chain Y, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
Length = 103
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 54 KKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCDICGKV 99
KKFE Q +Y CP C G ++K A G++ C C K+
Sbjct: 27 KKFEITQHAKYGCPFC---------GKVAVKRAAVGIWKCKPCKKI 63
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C+ CGK + L RH++ G++P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
+ C+ CGK + L RH++ G++P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C+ CGK + L RH++ G++P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
+ C+ CGK + L RH++ G++P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C +C K + K L +H+K G++P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.9 bits (58), Expect = 4.7, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 91 YVCDICGKVYQHKRTLYRHK 110
++CD+CGK ++ K TL HK
Sbjct: 10 HLCDMCGKKFKSKGTLKSHK 29
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
F C+ CGK + +L+ H++ G++P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
+ C CGK + NL +H+K Q+P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y+C CGK + + L +H+K Q+P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 93 CDICGKVYQHKRTLYRH--KKDECGQEPRFQCPQCPYRAKQKANLKTHLIIKHDSVLL 148
C+ICG + K +L H K E RF C C R ++ ++ H H ++LL
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHL 139
Y+C+ CG + L +H + P + C C + K K NL H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHM 49
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 120 FQCPQCPYRAKQKANLKTHL 139
F+C C Y + K+NLK H+
Sbjct: 10 FKCSLCEYATRSKSNLKAHM 29
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
F C+ CGK + L+ H++ G++P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
F CD+CGK + L RH ++P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C+ CGK + H L H++ G++P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C CGK + K L +H++ G++P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 103 KRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHL 139
K L H++ C P F+C C + KQ +NL H+
Sbjct: 22 KAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHM 57
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 120 FQCPQCPYRAKQKANLKTHLIIKH 143
+QC C R +NLKTH+ KH
Sbjct: 3 YQCQYCEKRFADSSNLKTHIKTKH 26
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
+ C VCGK ++ +L +H G+ P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
VC+ CGK ++ L +H++ G++P
Sbjct: 11 LVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
F C CGK Y +L +H++ G++P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 25.8 bits (55), Expect = 8.2, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
F C+ CGK + + +L +H+ G+ P
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y CD CGK + K +L H + G P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C+ CGK ++ + +L H+ G++P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQE 117
YVC+ CGK ++ K L H + G+
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGES 39
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 96 CGKVYQHKRTLYRHKKDECGQEPRFQC--PQCPYRAKQKANLKTHLII 141
CGK++ L HK+ G++P F+C C R ++ K H+ +
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKP-FKCEFEGCDRRFANSSDRKKHMHV 144
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 91 YVCDICGKVYQHKRTL-----YRHKKDECGQEPRFQCPQCP 126
Y CDICGK Y+++ L + H +E G++ P P
Sbjct: 8 YACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKEDSQPPTP 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.476
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,950,165
Number of Sequences: 62578
Number of extensions: 198904
Number of successful extensions: 780
Number of sequences better than 100.0: 129
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 266
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)