RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12018
(148 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 45.1 bits (107), Expect = 2e-07
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 91 YVCDICGKVYQHKRTLYRHKK---DECGQEPRFQCPQCPYRAKQKANLKTHLIIKHDSVL 147
C+ICG + K +L H++ + F C C R ++ ++ H H ++L
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Score = 31.6 bits (72), Expect = 0.020
Identities = 11/92 (11%), Positives = 27/92 (29%), Gaps = 26/92 (28%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCD 94
C++CG + +L H+ R + + + C+
Sbjct: 8 LQCEICGFTCRQKASLNWHQ-----------------RKHAETVA---ALR-----FPCE 42
Query: 95 ICGKVYQHKRTLYRHKKDECGQEPRFQCPQCP 126
CGK ++ ++ H+ + +
Sbjct: 43 FCGKRFEKPDSVAAHRS-KSHPALLLAPQESS 73
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 43.3 bits (103), Expect = 6e-07
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLII 141
C C K L H++ C P F+C C + KQ +NL H+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKK 59
Score = 32.5 bits (75), Expect = 0.008
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQK 76
C C L H++ C P ++C C + TKQ
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQP 50
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 41.0 bits (97), Expect = 4e-06
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPR-FQCPQCPYRAKQKANLKTHLIIKH 143
Y C +C +VY H RH + + + CP C +K N+ H+ I H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 29.1 bits (66), Expect = 0.11
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPR-YQCPQC 69
+ C VC + Y + N RH + + Y CP C
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFC 46
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 40.2 bits (95), Expect = 1e-05
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPR-FQCPQCPYRAKQKANLKTHLIIKH 143
Y C IC + T+ H + + F CP C +K++L HL +H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 27.5 bits (62), Expect = 0.50
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPR-YQCPQC 69
+ C +C + + H + + + CP C
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHC 51
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 38.5 bits (89), Expect = 4e-05
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHL 139
Y+C+ CG + L +H + P + C C + K K NL H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHM 49
Score = 28.5 bits (63), Expect = 0.18
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 63 RYQCPQCPYRTKQKELGWESLKPN-AYGMYVCDICGKVYQHKRTLYRHKKDECG 115
+Y C +C R K+ + + ++ + Y C C ++ K L +H K +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 37.2 bits (85), Expect = 3e-04
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCD 94
+ C +C + H++ CP C R EL E Y C
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERL---CRNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCL 73
Query: 95 ICGKVYQHKRTLYRHKK 111
C + ++ +++RH+
Sbjct: 74 ECMRTFKSSFSIWRHQV 90
Score = 27.2 bits (59), Expect = 1.3
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLIIKHD 144
VC C + H+ + + C +C K ++ H + H+
Sbjct: 43 AVCPYCSLRFFSPELKQEHESKC--EYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 25.6 bits (55), Expect = 4.2
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 32 YGKFACDVCGKEYQYYRNLYRHKK 55
Y K C C + ++ +++RH+
Sbjct: 67 YKKLTCLECMRTFKSSFSIWRHQV 90
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 37.1 bits (87), Expect = 3e-04
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQK-ELGW-------ESLKPN 86
AC++CGK ++ +L RHK G++P Y CP C R K+K + + KP
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDGSVGKP- 65
Query: 87 AYGMYVCDICGKVYQHKRTLYRHKK 111
Y+C CGK + L H K
Sbjct: 66 ----YICQSCGKGFSRPDHLNGHIK 86
Score = 34.8 bits (81), Expect = 0.002
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLII 141
C+ICGK+++ L RHK G++P + CP C R K+K + H+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRS 57
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 37.2 bits (85), Expect = 4e-04
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 4/109 (3%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCD 94
V +E + Y L +K + P + + L A +VC
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIH-NPQLLDESSYLYRLLASKAISQFVCP 78
Query: 95 ICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLIIKH 143
+C + +L +H + E CP C + H+ KH
Sbjct: 79 LCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 29.5 bits (65), Expect = 0.26
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 2 NSLNSPLRGKSRVLHWNSFMSWEGPFKPKLYGKFACDVCGKEYQYYRNLYRHKKFECGQE 61
++ L ++L +S++ K +F C +C + +L +H ++ E
Sbjct: 44 RAIVKTLIHNPQLLDESSYLYRL--LASKAISQFVCPLCLMPFSSSVSLKQHIRYT---E 98
Query: 62 PRYQCPQCPYRTKQKE 77
CP C +
Sbjct: 99 HTKVCPVCKKEFTSTD 114
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 34.7 bits (81), Expect = 0.002
Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 29/105 (27%)
Query: 37 CDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCDIC 96
C+VCGK + L H + G +P Y C C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKP----------------------------YKCKTC 42
Query: 97 GKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLII 141
+L +H + + P F+C CPY ++ + L HL
Sbjct: 43 DYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVHLRS 86
Score = 33.6 bits (78), Expect = 0.005
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLII 141
+ C++CGK + K L H + G +P ++C C Y A ++L HL I
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRI 58
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 33.3 bits (75), Expect = 0.006
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 88 YGMYVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLIIKHDS 145
G C C V + + + C QE F C C + + A +K H++ H+S
Sbjct: 32 KGSVSCPTCQAVGRKTIEGLKKHMENCKQEM-FTCHHCGKQLRSLAGMKYHVMANHNS 88
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 34.3 bits (80), Expect = 0.006
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 23/115 (20%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESL----------- 83
+AC CGK + +L H++ G++P Y+CP+C K +
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPEC-----GKSFSDKKDLTRHQRTHTGE 75
Query: 84 KPNAYGMYVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTH 138
KP Y C CGK + + L H++ G++P + CP+C Q A+L+ H
Sbjct: 76 KP-----YKCPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAH 124
Score = 32.8 bits (76), Expect = 0.023
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 23/113 (20%)
Query: 37 CDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESL-----------KP 85
C CGK + NL H++ G++P Y CP+C K + KP
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKP-YACPEC-----GKSFSQLAHLRAHQRTHTGEKP 133
Query: 86 NAYGMYVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTH 138
Y C CGK + + L+ H++ G++P ++CP+C ++ L H
Sbjct: 134 -----YKCPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVH 180
Score = 28.6 bits (65), Expect = 0.57
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 22/88 (25%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESL----------- 83
+AC CGK + +L H++ G++P Y+CP+C K E
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPEC-----GKSFSREDNLHTHQRTHTGE 159
Query: 84 KPNAYGMYVCDICGKVYQHKRTLYRHKK 111
KP Y C CGK + + L H++
Sbjct: 160 KP-----YKCPECGKSFSRRDALNVHQR 182
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 34.3 bits (78), Expect = 0.007
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 13/60 (21%)
Query: 60 QEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCDICGKVYQHKRTLYRHKKDECGQEPR 119
CP+C + ++ + G VC +CG V K D E R
Sbjct: 18 LNIVLTCPEC--KVYPPKIVERFSE----GDVVCALCGLVLSDKLV------DT-RSEWR 64
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 32.8 bits (74), Expect = 0.011
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 5/81 (6%)
Query: 47 YRNLYRHKKFECGQEPRYQCPQCPYRTKQKE-----LGWESLKPNAYGMYVCDICGKVYQ 101
+ + H + E Y+C C ++T + E YVC C + +
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTK 61
Query: 102 HKRTLYRHKKDECGQEPRFQC 122
L H E F+
Sbjct: 62 RYDALSEHNLKYHPGEENFKL 82
Score = 31.3 bits (70), Expect = 0.040
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 104 RTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLIIKHDSVLL 148
+ H + E ++C C ++ H+ +H +V+L
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVL 47
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 31.7 bits (73), Expect = 0.018
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 25/91 (27%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCD 94
+AC C K ++ + L H K +VC
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVP-------------------AA-----FVCS 51
Query: 95 ICGKVYQHKRTLYRHKKDECGQEPRFQCPQC 125
CGK + + T+ RH + G + +
Sbjct: 52 KCGKTFTRRNTMARHADNCAGPDG-VEGENS 81
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 31.6 bits (73), Expect = 0.018
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLII 141
+ C ICGK ++ TL H P + C C R QK+++K H I
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFI 51
Score = 29.7 bits (68), Expect = 0.085
Identities = 24/107 (22%), Positives = 34/107 (31%), Gaps = 29/107 (27%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCD 94
F C +CGK ++ L H P Y C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP----------------------------YPCQ 33
Query: 95 ICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLII 141
CGK + K + +H G++P +C C Q +NL TH
Sbjct: 34 YCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAFSQSSNLITHSRK 79
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 31.8 bits (71), Expect = 0.024
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 86 NAYGMYVCDICGKVYQHKRTLYRHKKDECGQE-PRFQCPQCPYRAKQKANLKTHLIIKHD 144
+ G VC C V + + + C + +C C + K KA L H + +H
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Query: 145 S 145
+
Sbjct: 80 A 80
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 31.6 bits (73), Expect = 0.025
Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 29/107 (27%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCD 94
F C CG+ + NL H++ + P Y CD
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERP----------------------------YTCD 49
Query: 95 ICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLII 141
IC K ++ + L H+ ++P F+C +C Q L H +
Sbjct: 50 ICHKAFRRQDHLRDHRYIHSKEKP-FKCQECGKGFCQSRTLAVHKTL 95
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 31.7 bits (71), Expect = 0.033
Identities = 18/107 (16%), Positives = 28/107 (26%), Gaps = 24/107 (22%)
Query: 34 KFACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVC 93
KF C C Y L H R +
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNE--TGHYRDDNHET---------------------DNN 55
Query: 94 DICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLI 140
+ KR+L + E Q+ +C C + + +L H+I
Sbjct: 56 NPKRWSKPRKRSLLEMEGKEDAQKV-LKCMYCGHSFESLQDLSVHMI 101
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 29.9 bits (67), Expect = 0.039
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQC 125
C+ICGK+++ L RHK G++P +
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPS 46
Score = 28.8 bits (64), Expect = 0.13
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 34 KFACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQC 69
+ AC++CGK ++ +L RHK G++P Y
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPS 46
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 30.1 bits (69), Expect = 0.067
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLII 141
+ C IC + + L H + G++P F C C + + K H I
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHTKI 84
Score = 26.7 bits (60), Expect = 1.4
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 26/91 (28%)
Query: 35 FACDV--CGKEYQYYRNLYRHKKFECGQEPRYQCPQCP------------YRTKQKELGW 80
+AC V C + + +L RH + GQ+P +QC C RT E
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGE--- 60
Query: 81 ESLKPNAYGMYVCDICGKVYQHKRTLYRHKK 111
KP + CDICG+ + RH K
Sbjct: 61 ---KP-----FACDICGRKFARSDERKRHTK 83
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 29.7 bits (68), Expect = 0.092
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTH 138
Y CD CGK + H L +H++ G++P ++C +C Q+++L H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGH 65
Score = 26.6 bits (60), Expect = 1.00
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQC 69
+ CD CGK + + +L +H++ G++P Y+C +C
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDEC 52
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_m 1ysh_D 2zkr_z
Length = 92
Score = 29.8 bits (67), Expect = 0.097
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 52 RHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCDICGKVY 100
+ KK E Q +Y C C G ++K A G++ C CGKV
Sbjct: 25 QIKKMEVSQHSKYFCEFC---------GKFAVKRKAVGIWGCKDCGKVK 64
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 29.8 bits (68), Expect = 0.11
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTH 138
+ C IC + + L H + G++P F C C + + K H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRH 50
Score = 27.1 bits (61), Expect = 0.84
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 19/86 (22%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESL---------KP 85
F C +C + + +L H + G++P + C C + + + P
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSD----ERKRHRDIQHILP 58
Query: 86 NAYGMYVCDICGKVYQHKRTLYRHKK 111
+ D ++ L
Sbjct: 59 -----ILEDKVEELLSKNYHLENEVA 79
Score = 26.3 bits (59), Expect = 1.9
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTH 138
+ CDICG+ + RH+ + + + +L+
Sbjct: 32 FACDICGRKFARSDERKRHRDIQ--HILPILEDKVEELLSKNYHLENE 77
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 30.2 bits (69), Expect = 0.11
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDEC---GQEPRFQCPQCPYRAKQKANLKTH 138
+ C CGK Y K L H+ C ++ F C C +++ L+ H
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVCQETFRRRMELRLH 85
Score = 29.4 bits (67), Expect = 0.21
Identities = 20/91 (21%), Positives = 28/91 (30%), Gaps = 25/91 (27%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFEC---GQEPRYQCPQCPYRTKQKELGWESL-------- 83
F C CGK Y NL H+ C ++ + C C Q+
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVC-----QETFRRRMELRLHMVSH 89
Query: 84 ---KPNAYGMYVCDICGKVYQHKRTLYRHKK 111
P Y C C + + K+ L H
Sbjct: 90 TGEMP-----YKCSSCSQQFMQKKDLQSHMI 115
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 29.6 bits (67), Expect = 0.26
Identities = 23/107 (21%), Positives = 32/107 (29%), Gaps = 22/107 (20%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCD 94
C + + L H E P Q Y + C
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGP-EQNNHVCYWEE------------------CP 66
Query: 95 ICGKVYQHKRTLYRHKKDECGQEPRFQC--PQCPYRAKQKANLKTHL 139
GK ++ K L H + G++P F C P C + NLK H
Sbjct: 67 REGKSFKAKYKLVNHIRVHTGEKP-FPCPFPGCGKIFARSENLKIHK 112
Score = 26.9 bits (60), Expect = 2.3
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 96 CGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLIIKH 143
G Q + K + Q C L TH+ ++H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLS-RPKKSCDRTFSTMHELVTHVTMEH 49
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 28.2 bits (64), Expect = 0.28
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 28/75 (37%)
Query: 37 CDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCDIC 96
CD C ++Y NL HK G++P Y C+IC
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKP----------------------------YRCNIC 51
Query: 97 GKVYQHKRTLYRHKK 111
G + L H +
Sbjct: 52 GAQFNRPANLKTHTR 66
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 28.2 bits (64), Expect = 0.31
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLII 141
Y C CGK + L +H++ G++P ++C +C Q + L H I
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINHQRI 64
Score = 27.0 bits (61), Expect = 0.63
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQC 69
+ C CGK + L +H++ G++P Y+C +C
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLEC 48
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA,
protein-protein; 2.40A {Haloarcula marismortui} SCOP:
g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1*
1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1*
1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Length = 73
Score = 27.8 bits (62), Expect = 0.37
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 52 RHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCDICGKVY 100
R + E + +Y+CP C G+ LK + ++VC CG
Sbjct: 16 RVRDVEIKHKKKYKCPVC---------GFPKLKRASTSIWVCGHCGYKI 55
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m
3o58_g 3o5h_g 3u5e_p 3u5i_p 1s1i_9
Length = 92
Score = 28.3 bits (63), Expect = 0.40
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 52 RHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCDICGKVY 100
+ KK E Q RY C C G +++K A G++ C C K
Sbjct: 25 QVKKLEIQQHARYDCSFC---------GKKTVKRGAAGIWTCSCCKKTV 64
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 27.7 bits (62), Expect = 0.42
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 91 YVCDI--CGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHL 139
Y C + C + + L RH + GQ+P FQC C + +L TH+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.1 bits (59), Expect = 0.44
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 120 FQCPQCPYRAKQKANLKTHL 139
++CPQC Y + KANL HL
Sbjct: 10 YKCPQCSYASAIKANLNVHL 29
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 27.5 bits (62), Expect = 0.56
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 91 YVCDI--CGKVYQHKRTLYRHKKDE-CGQEPRFQCPQ--CPYRAKQKANLKTHLII 141
CD CG+++ +++ L HKK + Q+ F CP+ C K +LK H+ +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEHMKL 62
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 26.7 bits (60), Expect = 0.58
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 91 YVCDICGKVYQHKRTLYRH 109
Y C+ICG ++H +TL H
Sbjct: 12 YPCEICGTRFRHLQTLKSH 30
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1210
Score = 29.1 bits (65), Expect = 0.63
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 87 AYGMYVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAK 130
AY + VCDICG + ++ C RF PY AK
Sbjct: 1146 AYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAK 1189
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Y 4a1c_Y 4a1e_Y
Length = 103
Score = 27.6 bits (61), Expect = 0.75
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 52 RHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCDICGKVY 100
KKFE Q +Y CP C G ++K A G++ C C K+
Sbjct: 25 VVKKFEITQHAKYGCPFC---------GKVAVKRAAVGIWKCKPCKKII 64
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 26.3 bits (57), Expect = 0.77
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 120 FQCPQCPYRAKQKANLKTHLIIKH 143
+QC C +R+ +NLKTH+ KH
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKH 26
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.80
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKK 111
+ CDICGK + + L RH
Sbjct: 13 FKCDICGKSFCGRSRLNRHSM 33
Score = 25.1 bits (56), Expect = 2.4
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQC 66
F CD+CGK + L RH ++P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP-SGP 43
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 26.3 bits (57), Expect = 0.81
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 120 FQCPQCPYRAKQKANLKTHLIIKHDSVL 147
+ C QC Y + K LK H+I KH ++L
Sbjct: 10 YYCSQCHYSSITKNCLKRHVIQKHSNIL 37
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 27.4 bits (62), Expect = 0.85
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLII 141
Y C CGK + HK RH G P + C C + K K +L H+ I
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKI 59
Score = 27.4 bits (62), Expect = 0.93
Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 20/81 (24%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESL---------KP 85
+ C VCGK+++ +L H K G +P Y+C C K W K
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNIC-----AKRFMWRDSFHRHVTSCTKS 91
Query: 86 NAYGMYVCDICGKVYQHKRTL 106
Y +
Sbjct: 92 -----YEAAKAEQNTTEASGP 107
Score = 27.0 bits (61), Expect = 1.1
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQC 125
Y C +CGK ++ K L H K G +P ++C C
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNIC 71
Score = 26.3 bits (59), Expect = 2.2
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 23/96 (23%)
Query: 40 CGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESL----------KPNAYG 89
CGK + + RH G P Y C C + K K L KP
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKH----HLVGHMKIHTGIKP---- 65
Query: 90 MYVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQC 125
Y C+IC K + + + H+ + ++ +
Sbjct: 66 -YECNICAKRFMWRDSF--HRHVTSCTKS-YEAAKA 97
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z*
1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z*
1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z*
1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Length = 83
Score = 27.1 bits (60), Expect = 0.92
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 9/49 (18%)
Query: 52 RHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCDICGKVY 100
R + E + CP C G + + G++ C C +
Sbjct: 16 RVAEIESEMNEDHACPNC---------GEDRVDRQGTGIWQCSYCDYKF 55
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
{Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Length = 279
Score = 28.1 bits (63), Expect = 0.95
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 28 KPKL-YGKFACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYR 72
+P++ F C C + + ++ EP C +C R
Sbjct: 127 RPRIVKAVFECRGCMRHHAVTQSTNMI------TEPSL-CSECGGR 165
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.0 bits (56), Expect = 1.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 120 FQCPQCPYRAKQKANLKTHL 139
F+C C Y + K+NLK H+
Sbjct: 10 FKCSLCEYATRSKSNLKAHM 29
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 27.6 bits (62), Expect = 1.1
Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 25/125 (20%)
Query: 37 CDVCGKEYQYYRNLYRHKKFEC---GQEPRYQCPQCPYRTKQKELGWESL---------- 83
D C +E+ L H E ++ + C + + + +
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 84 -KPNAYGMYVCDI--CGKVYQHKRTLYRHKKDECGQEPRFQCPQ--CPYRAKQKANLKTH 138
KP + C C K Y L H + G++P + C C ++ H
Sbjct: 65 EKP-----HKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAKH 118
Query: 139 LIIKH 143
H
Sbjct: 119 QNRTH 123
Score = 27.2 bits (61), Expect = 1.7
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 9/56 (16%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDEC---GQEPRFQCPQCPYRAKQKA-----NLKTH 138
D C + + + L H E ++ F C + + L H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGGCSRELRPFKAQYMLVVH 58
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 25.7 bits (57), Expect = 1.2
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 91 YVCDICGKVYQHKRTLYRHKK 111
Y C C + + L +H+K
Sbjct: 11 YSCAECKETFSDNNRLVQHQK 31
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus}
Length = 72
Score = 26.7 bits (59), Expect = 1.2
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 52 RHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCDICGKVY 100
+ KK E Q RY C C G +++K A G++ C C K
Sbjct: 15 QVKKLEIQQHARYDCSFC---------GKKTVKRGAAGIWTCSCCKKTV 54
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 1.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 91 YVCDICGKVYQHKRTLYRHK 110
++CD+CGK ++ K TL HK
Sbjct: 10 HLCDMCGKKFKSKGTLKSHK 29
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 26.8 bits (60), Expect = 1.3
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 91 YVCDI--CGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHL 139
Y C C + L RH + G +P FQC C + +L H+
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALHM 95
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 26.7 bits (60), Expect = 1.4
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 91 YVCDI--CGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTH 138
Y CD CG + L RH + G P FQC +C + +L H
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQKCDRAFSRSDHLALH 84
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 26.5 bits (58), Expect = 1.4
Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 49 NLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCDICGKVYQHKRTLYR 108
+ + +K G +C +C + + +C+ C K + L +
Sbjct: 5 SSGKRQKIHLGDRS-QKCSKCGIIFIR------RSTLSRRKTPMCEKCRKDSCQEAALNK 57
Query: 109 HKKDECGQEP 118
+ +E G++
Sbjct: 58 DEGNESGKKT 67
Score = 25.0 bits (54), Expect = 4.5
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 8/48 (16%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTH 138
C CG ++ + TL R K C +C + Q+A L
Sbjct: 19 QKCSKCGIIFIRRSTLSRRKT--------PMCEKCRKDSCQEAALNKD 58
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 26.5 bits (58), Expect = 1.7
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 8/57 (14%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDE---CGQEPRFQC--PQCPYRAK---QKANLKTHL 139
C + + L H E ++ C +CP K K L H+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic
sequnece for R-proteins, ribonucleoprotein, ribosoma
protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A
{Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z*
3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z*
3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z*
3i56_Z* 3cpw_Y* 4adx_Z
Length = 116
Score = 26.8 bits (59), Expect = 1.7
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 9/49 (18%)
Query: 52 RHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCDICGKVY 100
R + E + CP C G + + G++ C C +
Sbjct: 49 RVAEIESEMNEDHACPNC---------GEDRVDRQGTGIWQCSYCDYKF 88
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 26.7 bits (60), Expect = 2.0
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCP--QCPYRAKQKANLKTH 138
+VC CGK + L RH+ G++P FQC C R NL+TH
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTH 83
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B
1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B*
1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B*
1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Length = 1224
Score = 27.5 bits (61), Expect = 2.0
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 87 AYGMYVCDICGKV-YQHKRTLYRHKKDECGQEPRFQCPQCPYRAK 130
A+ +++C ICG + K + + C + PY AK
Sbjct: 1157 AFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAK 1201
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 25.5 bits (57), Expect = 2.0
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 28/77 (36%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCD 94
F C+VC + + +L RH R+ E KP Y C
Sbjct: 3 FVCEVCTRAFARQEHLKRHY-----------------RSHTNE------KP-----YPCG 34
Query: 95 ICGKVYQHKRTLYRHKK 111
+C + + + L RH +
Sbjct: 35 LCNRAFTRRDLLIRHAQ 51
>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin +
alpha-helix; NMR {Drosophila melanogaster} SCOP:
g.37.1.2 PDB: 1jn7_A
Length = 36
Score = 25.1 bits (54), Expect = 2.2
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 37 CDVCGKEYQYYRNLYRHKKFECGQEP 62
C C + Y + HK+F C +P
Sbjct: 11 CSTCDISFNYVKTYLAHKQFYCKNKP 36
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.6
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQC 122
++C CGKV+ HK L H+K G+ P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP-SGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.6
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQ 124
YVCD CGK + L RH++ G++P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP-SGPSS 45
Score = 23.6 bits (52), Expect = 7.2
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQ 68
+ CD CGK + L RH++ G++P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP-SGPSS 45
>3qt1_I DNA-directed RNA polymerases I, II, and III subun;
transferase-transcription complex, RNA polymerase II,
transc elongation; 4.30A {Saccharomyces cerevisiae}
Length = 133
Score = 26.3 bits (57), Expect = 2.9
Identities = 9/75 (12%), Positives = 20/75 (26%), Gaps = 7/75 (9%)
Query: 70 PYRTKQKELGWESLKPNAYGMYVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRA 129
+ G + C C + ++D+ F+C C Y
Sbjct: 4 SHHHHHHSSGLVPRGSHMTTFRFCRDCN-------NMLYPREDKENNRLLFECRTCSYVE 56
Query: 130 KQKANLKTHLIIKHD 144
+ + L + +
Sbjct: 57 EAGSPLVYRHELITN 71
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 26.7 bits (60), Expect = 3.1
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 73 TKQKELGWESLKPNAYGMYVC 93
TKQKE+ ++ ++ +YVC
Sbjct: 12 TKQKEI-FKPIESGKVKLYVC 31
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.1
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQC 66
+ C+ CGK + + +L H K ++
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKS-SGP 43
Score = 23.6 bits (52), Expect = 7.4
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQC 122
Y C+ CGK + L H K ++
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKS-SGP 43
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B
2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Length = 1131
Score = 26.7 bits (59), Expect = 3.3
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 87 AYGMYVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAK 130
+YVCD CG + + + ++ G + Y K
Sbjct: 1058 RTTIYVCDQCGYIGWYDKNKNKYVCPIHGDKSNLFPVTVSYAFK 1101
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 26.7 bits (60), Expect = 3.5
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 73 TKQKELGWESLKPNAYGMYVC 93
T+QKE ++ + GMYVC
Sbjct: 9 TRQKEE-FKPIHAGEVGMYVC 28
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.5 bits (54), Expect = 3.5
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
+ C CG + +L++H + +P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDP 40
Score = 23.7 bits (52), Expect = 8.2
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEP 62
F C CG + + +L++H + +P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDP 40
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 25.3 bits (56), Expect = 3.6
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 91 YVCD--ICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLIIKH 143
Y C C K + L RH+K G + C + K H+ H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWTLYLKHVAECH 85
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.5 bits (54), Expect = 3.6
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 91 YVCDICGKVYQHKRTLYRHK 110
+ CD CGK + + L H+
Sbjct: 13 HTCDECGKNFCYISALRIHQ 32
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 26.4 bits (57), Expect = 4.0
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 8/104 (7%)
Query: 30 KLYGKFACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQC-----PYRTKQKELGW-ESL 83
K Y K C++C + + R C +C + E + +
Sbjct: 71 KGYDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEI 130
Query: 84 KPNAYGMYVCDICGK--VYQHKRTLYRHKKDECGQEPRFQCPQC 125
P ++ C IC K + L + G + C C
Sbjct: 131 APPKGSVFTCPICEKRSIVGVTANLVHDHNHDTGWGREWICDSC 174
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.4
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQC 122
Y CD+C K + H +L +H++ G++P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP-SGP 43
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 24.5 bits (54), Expect = 4.4
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 91 YVCDICGKVYQHKRTLYRHKKD-ECGQEPRFQCPQC 125
Y+C CGK + L H K + P +C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQVW 47
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.8
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C CGK + L +H ++P
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKP 40
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 5.0
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 37 CDVCGKEYQYYRNLYRHKKFECGQEPRYQC 66
CDVCGKE+ +L H++ G++P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP-SGP 43
Score = 23.6 bits (52), Expect = 7.0
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQC 122
Y CD+CGK + L H++ G++P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP-SGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 5.1
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 91 YVCDICGKVYQHKRTLYRHKK 111
Y CD+C K +++ +L H++
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQR 33
Score = 24.0 bits (53), Expect = 5.8
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 37 CDVCGKEYQYYRNLYRHKKFECGQEPRYQC 66
CDVC K ++Y +L H++ G++P
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKP-SGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 24.0 bits (53), Expect = 5.3
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKK 111
+ C CG+ + K L +H++
Sbjct: 13 HQCHECGRGFTLKSHLNQHQR 33
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 26.3 bits (58), Expect = 5.3
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 5/41 (12%)
Query: 26 PFKPKLYGKFACDVCGKEYQYYRNLYRHKKFECGQ--EPRY 64
PF K A + Y +YR G + +
Sbjct: 38 PFSAKYVPFNAAPGSTESYSLDEIVYRS---RSGGLLDVEH 75
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 5.3
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQC 66
++C+VCGK + +L +H + +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETL-SGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 5.9
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQC 122
Y C +CGK + H+++L H++ G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP-SGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.1 bits (53), Expect = 6.0
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
C CGK + K L H++ +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKH 40
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 23.7 bits (52), Expect = 6.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y CD CGK + K +L H + G P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 6.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y+C +CGK + + L +H+K G++P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 23.8 bits (52), Expect = 6.2
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y+C CGK + + +L H++ P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 6.2
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQC 66
+ C VCGK ++ +L +H G+ P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERP-SGP 43
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 25.2 bits (56), Expect = 6.4
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQC--PQCPYRAKQKANLKTH 138
+ C C + + L H + G++P F C P C + + L H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRH 115
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 6.8
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQC 122
Y C+ CGK + K L H++ G++P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP-SGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 7.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y+C CGK + + L +H+K Q+P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP 40
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 7.3
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQC 66
+ C+ CGK Y NL H++ G++
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKT-SGP 43
Score = 23.6 bits (52), Expect = 7.9
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C+ CGK Y + L H++ G++
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKT 40
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 25.0 bits (54), Expect = 7.6
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 89 GMYVCDICGKVYQHKRTLYRHKK 111
G++ C C + + L H +
Sbjct: 49 GLHRCLACARYFIDSTNLKTHFR 71
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 23.7 bits (52), Expect = 7.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C+ CGK + +R LY H G++P
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKP 40
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 23.6 bits (52), Expect = 7.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKK 111
Y C CGKV+ K L H+K
Sbjct: 13 YECCECGKVFSRKDQLVSHQK 33
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 23.7 bits (52), Expect = 8.1
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
+ C C + +L H+ G++P
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKP 40
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 23.7 bits (52), Expect = 8.1
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEPRFQC 122
Y C CGK ++ K +L H++ G++P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP-SGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 8.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C+ CGKV++H L RH++ G++P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 8.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C+ CGK + H L H++ G++P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 23.3 bits (51), Expect = 9.4
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 91 YVCDICGKVYQHKRTLYRHKKDECGQEP 118
Y C+ CGK + K L H++ G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSG 40
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics,
ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 56
Score = 23.8 bits (51), Expect = 9.5
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 58 CGQEPRYQCPQCPYRT 73
C ++P+Y+CP C
Sbjct: 18 CLEKPKYRCPACRVPY 33
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia
theta} SCOP: g.41.5.1 PDB: 1h7v_A
Length = 70
Score = 23.8 bits (52), Expect = 9.6
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 88 YGMYVCDICGKVY 100
G Y C+ CG +Y
Sbjct: 5 EGKYECEACGYIY 17
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 25.3 bits (55), Expect = 9.6
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 90 MYVCDICGKVYQHKRTLYRHKKDECGQEP 118
+Y+ D + + K+ R++K + P
Sbjct: 36 IYIDDFTLQYFGSKKQYERYRKKCTLRHP 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.476
Gapped
Lambda K H
0.267 0.0776 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,195,964
Number of extensions: 112423
Number of successful extensions: 979
Number of sequences better than 10.0: 1
Number of HSP's gapped: 896
Number of HSP's successfully gapped: 384
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)