RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12018
         (148 letters)



>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 53

 Score = 32.3 bits (73), Expect = 0.003
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 91  YVCDICGKVYQHKRTLYRHKKDECGQEPRFQCPQCPYRAKQKANLKTHLII 141
           Y C  CGK + HK    RH          + C  C  + K K +L  H+ I
Sbjct: 4   YPCQ-CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHMKI 52



 Score = 25.8 bits (56), Expect = 0.65
 Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 61  EPRYQCPQCPYRTKQKE-LGWESLKPNAYGMYVCDICGKVYQHKRTLYRHKK 111
           +  Y C QC      K               Y C +CGK ++ K  L  H K
Sbjct: 1   DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51



 Score = 23.1 bits (49), Expect = 6.3
 Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQCPQCPYRTKQK 76
          + C  CGK + +     RH          Y C  C  + K K
Sbjct: 4  YPCQ-CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMK 43


>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 30.0 bits (68), Expect = 0.012
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 120 FQCPQCPYRAKQKANLKTHLIIKH 143
           ++C  C  R  Q   +K H++ KH
Sbjct: 9   YECYICHARFTQSGTMKMHILQKH 32



 Score = 25.7 bits (57), Expect = 0.46
 Identities = 6/21 (28%), Positives = 8/21 (38%)

Query: 91  YVCDICGKVYQHKRTLYRHKK 111
           Y C IC   +    T+  H  
Sbjct: 9   YECYICHARFTQSGTMKMHIL 29



 Score = 22.6 bits (49), Expect = 4.9
 Identities = 3/21 (14%), Positives = 7/21 (33%)

Query: 35 FACDVCGKEYQYYRNLYRHKK 55
          + C +C   +     +  H  
Sbjct: 9  YECYICHARFTQSGTMKMHIL 29


>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 28.1 bits (63), Expect = 0.062
 Identities = 9/28 (32%), Positives = 11/28 (39%)

Query: 117 EPRFQCPQCPYRAKQKANLKTHLIIKHD 144
           E  + C  C    +QK  L  H    HD
Sbjct: 6   EKPYACSHCDKTFRQKQLLDMHFKRYHD 33



 Score = 25.8 bits (57), Expect = 0.43
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 91  YVCDICGKVYQHKRTLYRHKK 111
           Y C  C K ++ K+ L  H K
Sbjct: 9   YACSHCDKTFRQKQLLDMHFK 29



 Score = 22.3 bits (48), Expect = 6.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 35 FACDVCGKEYQYYRNLYRHKK 55
          +AC  C K ++  + L  H K
Sbjct: 9  YACSHCDKTFRQKQLLDMHFK 29


>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
          Length = 30

 Score = 27.8 bits (61), Expect = 0.068
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 120 FQCPQCPYRAKQKANLKTHLIIKH 143
           +QC  C +R+   +NLKTH+  KH
Sbjct: 3   YQCQYCEFRSADSSNLKTHIKTKH 26


>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 33

 Score = 26.8 bits (60), Expect = 0.17
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 91  YVCDICGKVYQHKRTLYRHKK 111
           Y C  CGK +     L +H++
Sbjct: 8   YGCVECGKAFSRSSILVQHQR 28



 Score = 25.7 bits (57), Expect = 0.38
 Identities = 5/25 (20%), Positives = 10/25 (40%)

Query: 117 EPRFQCPQCPYRAKQKANLKTHLII 141
           E  + C +C     + + L  H  +
Sbjct: 5   EKPYGCVECGKAFSRSSILVQHQRV 29



 Score = 23.3 bits (51), Expect = 2.5
 Identities = 6/21 (28%), Positives = 11/21 (52%)

Query: 35 FACDVCGKEYQYYRNLYRHKK 55
          + C  CGK +     L +H++
Sbjct: 8  YGCVECGKAFSRSSILVQHQR 28


>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 73

 Score = 27.7 bits (62), Expect = 0.17
 Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 9/49 (18%)

Query: 52  RHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCDICGKVY 100
           R  + E      + CP C         G + +     G++ C  C   +
Sbjct: 16  RVAEIESEMNEDHACPNC---------GEDRVDRQGTGIWQCSYCDYKF 55


>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula
           marismortui [TaxId: 2238]}
          Length = 73

 Score = 26.9 bits (60), Expect = 0.29
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 9/49 (18%)

Query: 52  RHKKFECGQEPRYQCPQCPYRTKQKELGWESLKPNAYGMYVCDICGKVY 100
           R    E   + +++CP C         G++ LK    G+++C  CG   
Sbjct: 16  RVADVEIKHKKKHKCPVC---------GFKKLKRAGTGIWMCGHCGYKI 55


>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 39

 Score = 26.1 bits (58), Expect = 0.36
 Identities = 5/24 (20%), Positives = 9/24 (37%)

Query: 120 FQCPQCPYRAKQKANLKTHLIIKH 143
           + C  C     +  +L  H+   H
Sbjct: 6   YICQSCGKGFSRPDHLNGHIKQVH 29



 Score = 24.6 bits (54), Expect = 1.00
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 91  YVCDICGKVYQHKRTLYRHKK 111
           Y+C  CGK +     L  H K
Sbjct: 6   YICQSCGKGFSRPDHLNGHIK 26



 Score = 22.6 bits (49), Expect = 5.0
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 35 FACDVCGKEYQYYRNLYRHKKFECGQEPRYQC 66
          + C  CGK +    +L  H K     E  ++C
Sbjct: 6  YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37


>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
           protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 38

 Score = 25.9 bits (57), Expect = 0.39
 Identities = 5/34 (14%), Positives = 13/34 (38%), Gaps = 1/34 (2%)

Query: 108 RHKKDECGQEPRFQCPQCPYRAKQKANLKTHLII 141
           R +  +  +   ++C +C       ++L  H   
Sbjct: 2   RSEWQQRERRR-YKCDECGKSFSHSSDLSKHRRT 34


>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 35

 Score = 25.8 bits (56), Expect = 0.46
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 93  CDICGKVYQHKRTLYRHKKDECGQEP 118
           C+ICGK+++    L RHK    G++P
Sbjct: 8   CEICGKIFRDVYHLNRHKLSHSGEKP 33



 Score = 24.6 bits (53), Expect = 1.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 36 ACDVCGKEYQYYRNLYRHKKFECGQEP 62
          AC++CGK ++   +L RHK    G++P
Sbjct: 7  ACEICGKIFRDVYHLNRHKLSHSGEKP 33


>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 37

 Score = 25.5 bits (55), Expect = 0.59
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 91  YVCDICGKVYQHKRTLYRHKKDECGQE 117
           +VC  CGK +  + T+ RH  +  G +
Sbjct: 5   FVCSKCGKTFTRRNTMARHADNCAGPD 31


>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 28

 Score = 24.9 bits (55), Expect = 0.66
 Identities = 5/21 (23%), Positives = 9/21 (42%)

Query: 91  YVCDICGKVYQHKRTLYRHKK 111
           + C IC + +     L  H +
Sbjct: 4   FQCRICMRNFSRSDHLTTHIR 24



 Score = 23.7 bits (52), Expect = 1.9
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 117 EPRFQCPQCPYRAKQKANLKTHLII 141
           +  FQC  C     +  +L TH+  
Sbjct: 1   QKPFQCRICMRNFSRSDHLTTHIRT 25



 Score = 21.8 bits (47), Expect = 9.0
 Identities = 5/21 (23%), Positives = 10/21 (47%)

Query: 35 FACDVCGKEYQYYRNLYRHKK 55
          F C +C + +    +L  H +
Sbjct: 4  FQCRICMRNFSRSDHLTTHIR 24


>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 29

 Score = 24.6 bits (54), Expect = 0.83
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 120 FQCPQCPYRAKQKANLKTHLII 141
           F CP+CP R  +  +L  H+  
Sbjct: 3   FACPECPKRFMRSDHLSKHIKT 24



 Score = 23.8 bits (52), Expect = 1.6
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 91  YVCDICGKVYQHKRTLYRHKK 111
           + C  C K +     L +H K
Sbjct: 3   FACPECPKRFMRSDHLSKHIK 23


>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 35

 Score = 24.7 bits (54), Expect = 0.85
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 117 EPRFQCPQCPYRAKQKANLKTHLIIKHDSV 146
           +  F C  C      KAN   HL +  D++
Sbjct: 5   KRPFVCRICLSAFTTKANCARHLKVHTDTL 34



 Score = 23.6 bits (51), Expect = 2.3
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 91  YVCDICGKVYQHKRTLYRHKK 111
           +VC IC   +  K    RH K
Sbjct: 8   FVCRICLSAFTTKANCARHLK 28


>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
           Saccharomyces cerevisiae sequence}
          Length = 29

 Score = 24.5 bits (54), Expect = 0.94
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 120 FQCPQCPYRAKQKANLKTHLII 141
           F C  C     ++ +LK H   
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRS 24



 Score = 24.5 bits (54), Expect = 1.0
 Identities = 6/21 (28%), Positives = 13/21 (61%)

Query: 91  YVCDICGKVYQHKRTLYRHKK 111
           +VC++C + +  +  L RH +
Sbjct: 3   FVCEVCTRAFARQEHLKRHYR 23



 Score = 21.8 bits (47), Expect = 9.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 35 FACDVCGKEYQYYRNLYRHKK 55
          F C+VC + +    +L RH +
Sbjct: 3  FVCEVCTRAFARQEHLKRHYR 23


>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 273

 Score = 26.7 bits (59), Expect = 1.2
 Identities = 6/29 (20%), Positives = 14/29 (48%)

Query: 90  MYVCDICGKVYQHKRTLYRHKKDECGQEP 118
           +Y+ D   + +  K+   R++K    + P
Sbjct: 34  IYIDDFTLQYFGSKKQYERYRKKCTLRHP 62


>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 26

 Score = 24.1 bits (53), Expect = 1.5
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 91  YVCDICGKVYQHKRTLYRHKK 111
           Y C  CGK +     L  H++
Sbjct: 3   YKCLECGKAFSQNSGLINHQR 23


>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different
          fingers {Fruit fly (Drosophila melanogaster) [TaxId:
          7227]}
          Length = 36

 Score = 23.7 bits (51), Expect = 2.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 37 CDVCGKEYQYYRNLYRHKKFECGQEP 62
          C  C   + Y +    HK+F C  +P
Sbjct: 11 CSTCDISFNYVKTYLAHKQFYCKNKP 36


>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 37

 Score = 23.5 bits (51), Expect = 2.7
 Identities = 5/21 (23%), Positives = 9/21 (42%)

Query: 91  YVCDICGKVYQHKRTLYRHKK 111
           + C  C + +     L  H+K
Sbjct: 12  FQCPDCDRSFSRSDHLALHRK 32



 Score = 22.8 bits (49), Expect = 5.5
 Identities = 7/22 (31%), Positives = 9/22 (40%)

Query: 120 FQCPQCPYRAKQKANLKTHLII 141
           FQCP C     +  +L  H   
Sbjct: 12  FQCPDCDRSFSRSDHLALHRKR 33


>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 270

 Score = 25.5 bits (56), Expect = 3.0
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 90  MYVCDICGKVYQHKRTLYRHKK 111
           +Y+C+ C K  + +  L +H K
Sbjct: 31  LYLCEFCLKYMKSRTILQQHMK 52


>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 29

 Score = 23.0 bits (49), Expect = 3.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 120 FQCPQCPYRAKQKANLKTHL 139
           F+C  C +  KQ +NL  H+
Sbjct: 3   FKCNYCSFDTKQPSNLSKHM 22


>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 29

 Score = 23.1 bits (49), Expect = 3.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 117 EPRFQCPQCPYRAKQKANLKTHL 139
           E  F+C  CPY ++  + L  HL
Sbjct: 1   ERPFKCQICPYASRNSSQLTVHL 23


>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 28

 Score = 22.7 bits (48), Expect = 4.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 119 RFQCPQCPYRAKQKANLKTHLIIKH 143
           +F CP C     +K++L  HL  +H
Sbjct: 2   KFHCPHCDTVIARKSDLGVHLRKQH 26


>d1y9ka1 d.108.1.1 (A:1-152) IAA acetyltransferase {Bacillus cereus
           [TaxId: 1396]}
          Length = 152

 Score = 24.6 bits (53), Expect = 4.4
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 30  KLYGKFACDVCGKEYQYYRNLYRHKKFECG 59
            LY K    +   ++ Y+   Y  +  E G
Sbjct: 109 ALYQKCGFRIFSIDFDYFSKHYEEEIIENG 138


>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
           MYST1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 271

 Score = 24.8 bits (54), Expect = 5.2
 Identities = 4/22 (18%), Positives = 13/22 (59%)

Query: 90  MYVCDICGKVYQHKRTLYRHKK 111
           +++C+ C K  +++++   H  
Sbjct: 31  LWLCEYCLKYMKYEKSYRFHLG 52


>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 30

 Score = 22.4 bits (47), Expect = 5.9
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 120 FQCPQCPYRAKQKANLKTHLIIKHDS 145
           F C  C  + +  A +K H++  H+S
Sbjct: 3   FTCHHCGKQLRSLAGMKYHVMANHNS 28


>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK,
           insert "zinc finger" domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 38

 Score = 22.4 bits (48), Expect = 6.1
 Identities = 6/31 (19%), Positives = 9/31 (29%), Gaps = 2/31 (6%)

Query: 89  GMYVCDICGKVY--QHKRTLYRHKKDECGQE 117
           G  +    G+ Y           K D  G+ 
Sbjct: 1   GRLIHPASGRSYHKIFNPPKEDMKDDVTGEA 31


>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 53

 Score = 23.0 bits (49), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 89  GMYVCDICGKVYQHKRTLYRHK 110
           G+  C +CGKV+     L +H+
Sbjct: 5   GILPCGLCGKVFTDANRLRQHE 26


>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 28

 Score = 22.1 bits (47), Expect = 6.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 35 FACDVCGKEYQYYRNLYRHKK 55
          FACD+CG+++       RH K
Sbjct: 4  FACDICGRKFARSDERKRHTK 24


>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae)
            [TaxId: 4932]}
          Length = 1207

 Score = 24.1 bits (51), Expect = 9.6
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 84   KPNAYGMYVCDICGKV-YQHKRTLYRHKKDECGQEPRFQCPQCPYRAK 130
              +A+ +++C ICG +    K    + +   C  +        PY AK
Sbjct: 1137 ASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAK 1184


>d1vqo31 g.41.8.3 (3:1-92) Ribosomal protein L44e {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 92

 Score = 23.1 bits (50), Expect = 9.7
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 30 KLYGKFACDVCGKEYQYYRNLYRHKKFE 57
          K   K+ C  CGK   + R  +R  + E
Sbjct: 64 KTDLKYRCGECGK--AHLREGWRAGRLE 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.476 

Gapped
Lambda     K      H
   0.267   0.0700    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 585,423
Number of extensions: 26842
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 135
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.7 bits)