RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12019
(87 letters)
>gnl|CDD|202726 pfam03691, UPF0167, Uncharacterized protein family (UPF0167).
The proteins in this family are about 200 amino acids
long and each contain 3 CXXC motifs.
Length = 177
Score = 30.0 bits (68), Expect = 0.090
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 8/35 (22%)
Query: 36 CDVCGK--GYKYKNGIYRHKKFECGQEPKYQCPQC 68
CD CG+ GY Y Y ++ +Y CP C
Sbjct: 27 CDCCGQARGYVYTGPFY------TVEDVEYLCPWC 55
>gnl|CDD|227510 COG5183, SSM4, Protein involved in mRNA turnover and stability
[RNA processing and modification].
Length = 1175
Score = 29.2 bits (65), Expect = 0.21
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 16 HNKCLINWSAVQQNHAGMFMCDVCGKGYKYKNGIY 50
H +CL+ W +G CD+C YK+K+ IY
Sbjct: 42 HRECLMEWME----CSGTKKCDICHYEYKFKD-IY 71
>gnl|CDD|236580 PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed.
Length = 478
Score = 27.9 bits (62), Expect = 0.52
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 23 WSAVQQNHAGMFMCDVCGKGYKYKNGIYRHKKFE 56
W+A++++ F DV +G +Y N Y K+FE
Sbjct: 255 WAAMKEDRENYFFIDVQARG-EYPN--YAKKRFE 285
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 27.8 bits (61), Expect = 0.69
Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 24/75 (32%)
Query: 34 FMCDV--CGKGYKYKNGIYRHKK-------------------FECGQEPKYQCPQCPYRA 72
+ C V C K YK +NG+ H F +P Y+C C R
Sbjct: 350 YKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKP-YRCEVCDKRY 408
Query: 73 KQNAHLTTHMAIKHY 87
K L H KH
Sbjct: 409 KNLNGLKYH--RKHS 421
>gnl|CDD|222450 pfam13909, zf-H2C2_5, C2H2-type zinc-finger domain.
Length = 24
Score = 24.5 bits (54), Expect = 1.9
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 63 YQCPQCPYRAKQNAHLTTHMAIKH 86
Y+C CPY + L H+ + H
Sbjct: 1 YKCSHCPYSSTP-KKLERHLKLHH 23
>gnl|CDD|216407 pfam01278, Omptin, Omptin family. The omptin family is a family of
serine proteases.
Length = 295
Score = 26.3 bits (58), Expect = 2.4
Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 8/43 (18%)
Query: 29 NHAGMFMCDVCGKGYKYK--------NGIYRHKKFECGQEPKY 63
+ G F GYK + G YR FE G KY
Sbjct: 157 DSVGNFPGGERAIGYKQRFKMPYIGLTGNYRIDDFEFGAAFKY 199
>gnl|CDD|143537 cd07163, NR_DBD_TLX, DNA-binding domain of Tailless (TLX) is
composed of two C4-type zinc fingers. DNA-binding
domain of Tailless (TLX) is composed of two C4-type
zinc fingers. Each zinc finger contains a group of four
Cys residues which co-ordinates a single zinc atom. TLX
interacts with specific DNA sites upstream of the
target gene and modulates the rate of transcriptional
initiation. TLX is an orphan receptor that is
expressed by neural stem/progenitor cells in the adult
brain of the subventricular zone (SVZ) and the dentate
gyrus (DG). It plays a key role in neural development
by promoting cell cycle progression and preventing
apoptosis in the developing brain. Like other members
of the nuclear receptor (NR) superfamily of
ligand-activated transcription factors, TLX has a
central well conserved DNA-binding domain (DBD), a
variable N-terminal domain, a flexible hinge and a
C-terminal ligand binding domain (LBD).
Length = 92
Score = 25.5 bits (56), Expect = 2.8
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 30 HAGMFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP 66
H G++ CD C G+ +K I R++++ C + + CP
Sbjct: 20 HYGIYACDGCS-GF-FKRSIRRNRQYVCKSKGQGGCP 54
>gnl|CDD|215825 pfam00262, Calreticulin, Calreticulin family.
Length = 359
Score = 25.7 bits (57), Expect = 2.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 33 MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTT 80
MF D+CG K + I+RHK +E K+ + R + HL T
Sbjct: 113 MFGPDICGSDTKKVHFIFRHKPITGYKEEKHLIKKPISRCDKLTHLYT 160
>gnl|CDD|237798 PRK14714, PRK14714, DNA polymerase II large subunit; Provisional.
Length = 1337
Score = 25.8 bits (57), Expect = 3.2
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 32 GMFMCDVCGKGYKYKNGIYRHKKFECG--QEPKYQCPQC 68
G C CG Y ++ +CG EP Y CP C
Sbjct: 666 GRRRCPSCGTE------TYENRCPDCGTHTEPVYVCPDC 698
>gnl|CDD|235840 PRK06599, PRK06599, DNA topoisomerase I; Validated.
Length = 675
Score = 25.6 bits (57), Expect = 3.4
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 36 CDVCGKGYKYKNGIYRHKKF-ECGQEPK 62
C CG K G R+ KF C P+
Sbjct: 640 CPKCGGPLVLKKG--RYGKFLACSGYPE 665
>gnl|CDD|235516 PRK05582, PRK05582, DNA topoisomerase I; Validated.
Length = 650
Score = 25.5 bits (57), Expect = 4.0
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 15/48 (31%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKF-------ECG------QEPKYQCPQC 68
C CG K G R+ KF +C +E +CP+C
Sbjct: 572 EDCPKCGSPMVIKMG--RYGKFIACSNFPDCRNTKPIVKEIGVKCPKC 617
>gnl|CDD|222987 PHA03103, PHA03103, double-strand RNA-binding protein; Provisional.
Length = 183
Score = 24.7 bits (54), Expect = 5.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 21 INWSAVQQNHAGMFMCDVCGKGYKYKNGIYRHKK 54
IN ++ +H+ F V G K+K I KK
Sbjct: 128 INITSSGPSHSPTFTASVIISGIKFKPAIGSTKK 161
>gnl|CDD|235871 PRK06835, PRK06835, DNA replication protein DnaC; Validated.
Length = 329
Score = 24.5 bits (54), Expect = 8.2
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 60 EPKYQCPQC 68
E KY CP+C
Sbjct: 96 EMKYTCPKC 104
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.136 0.468
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,003,125
Number of extensions: 279054
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 33
Length of query: 87
Length of database: 10,937,602
Length adjustment: 55
Effective length of query: 32
Effective length of database: 8,498,132
Effective search space: 271940224
Effective search space used: 271940224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)