RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12019
(87 letters)
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 43.6 bits (104), Expect = 1e-07
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
C C K + H++ C P ++C C + KQ ++L+ HM
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKK 59
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 38.2 bits (89), Expect = 2e-05
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 34 FMCDVCGKGYKYKNGIYRHKK---FECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 86
C++CG + K + H++ + C C R ++ + H + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 26.2 bits (58), Expect = 0.70
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 60 EPKYQCPQCPYRAKQNAHLTTHM 82
QC C + +Q A L H
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQ 27
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 36.6 bits (84), Expect = 5e-05
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
++C+ CG K + + +H + P Y C C + K +LT HM
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKS 51
Score = 24.3 bits (52), Expect = 2.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 62 KYQCPQCPYRAKQNAHLTTHM 82
KY C +C R K+ + L H+
Sbjct: 1 KYICEECGIRXKKPSMLKKHI 21
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 35.6 bits (83), Expect = 1e-04
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPK-YQCPQCPYRAKQNAHLTTHMAIKH 86
+ C VC + Y + + RH + K Y CP C + ++T H+ I H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 36.0 bits (84), Expect = 1e-04
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPK-YQCPQCPYRAKQNAHLTTHMAIKH 86
+ C +C + + H + + + CP C + + L H+ +H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 33.6 bits (78), Expect = 0.001
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 36 CDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
C C + + +H + + P ++C CPY ++ ++ LT H+
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVHLRS 86
Score = 33.2 bits (77), Expect = 0.002
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
C+VCGK + K+ + H + G +P Y+C C Y A ++ L H+ I
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRI 58
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 33.2 bits (77), Expect = 0.002
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
C++CGK ++ + RHK G++P Y CP C R K+ ++ H+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRS 57
Score = 32.8 bits (76), Expect = 0.003
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPK-YQCPQCPYRAKQNAHLTTHMAIKH 86
+ C VCG +K K+ + H + G K Y C C + HL H+ H
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 32.0 bits (74), Expect = 0.004
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 36 CDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
CD C ++YK + HK G++P Y+C C + + A+L TH I
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRI 67
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 30.9 bits (71), Expect = 0.012
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 36 CDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
C CGK + K+ + +H G++P ++C C Q+++L TH
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAFSQSSNLITHSRK 79
Score = 29.7 bits (68), Expect = 0.036
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
F C +CGK +K + + H P Y C C R Q + + H I
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFI 51
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 31.1 bits (69), Expect = 0.023
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 3/86 (3%)
Query: 1 MLNVIVKPRTHREPKHNKCLINWSAVQQNHAGMFMCDVCGKGYKYKNGIYRHKKFECGQE 60
++ IVK H ++ + + F+C +C + + +H ++ E
Sbjct: 42 LIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT---E 98
Query: 61 PKYQCPQCPYRAKQNAHLTTHMAIKH 86
CP C H+ KH
Sbjct: 99 HTKVCPVCKKEFTSTDSALDHVCKKH 124
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 29.7 bits (68), Expect = 0.032
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 36 CDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTH 81
CD CGK + + + + +H++ G++P Y+C +C Q +HL H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGH 65
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 29.4 bits (67), Expect = 0.046
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
F C +C + + + + H + G++P + C C + ++ H I
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHTKI 84
Score = 27.0 bits (61), Expect = 0.32
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 39 CGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
C + + + RH + GQ+P +QC C ++ HLTTH+
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRT 56
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 28.6 bits (65), Expect = 0.065
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTH 81
+ C CGK + + + +H++ G++P Y+C +C QN+ L H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINH 61
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 28.2 bits (64), Expect = 0.086
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHM 82
F+C+VC + + + + RH + ++P Y C C + L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHA 50
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 29.0 bits (66), Expect = 0.099
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 86
F C VC + ++ + + H G+ P Y+C C + Q L +HM H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 28.6 bits (65), Expect = 0.14
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFEC---GQEPKYQCPQCPYRAKQNAHLTTHMAI 84
F C CGK Y K + H+ C ++ + C C ++ L HM
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVCQETFRRRMELRLHMVS 88
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 29.0 bits (64), Expect = 0.10
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 50 YRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 86
+ H + E Y+C C ++ T H+ +H
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH 42
Score = 26.3 bits (57), Expect = 0.85
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 30 HAGMFMCDVCGKGYKYKNGIYRH---KKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 86
G + C C N H + Y C +C + K+ L+ H H
Sbjct: 15 VEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH 74
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 28.6 bits (65), Expect = 0.12
Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 36 CDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
CD+C K ++ ++ + H+ ++P ++C +C Q+ L H +
Sbjct: 48 CDICHKAFRRQDHLRDHRYIHSKEKP-FKCQECGKGFCQSRTLAVHKTL 95
Score = 28.6 bits (65), Expect = 0.13
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
F+C CG+ + + H++ + P Y C C ++ HL H I
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDHRYI 67
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 27.8 bits (63), Expect = 0.16
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
F C +C + + + + H + G++P + C C + ++ H I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDI 53
Score = 25.1 bits (56), Expect = 1.8
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMA 83
F CD+CG+ + + RH+ + + +N HL +A
Sbjct: 32 FACDICGRKFARSDERKRHRDIQ--HILPILEDKVEELLSKNYHLENEVA 79
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 28.2 bits (64), Expect = 0.17
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 39 CGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
CGK + +K+ RH G P Y C C + K HL HM I
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKI 59
Score = 25.9 bits (58), Expect = 1.2
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 36 CDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHM 82
C VCGK +K K+ + H K G +P Y+C C R H+
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSFHRHV 85
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 27.7 bits (62), Expect = 0.20
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 34 FMCDV--CGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHM 82
+ C V C + + + + RH + GQ+P +QC C ++ HLTTH+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 27.8 bits (63), Expect = 0.30
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 36 CDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
C CGK + + + H++ G++P Y CP+C Q AHL H
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAHQRT 127
Score = 27.8 bits (63), Expect = 0.33
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 36 CDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTH 81
C CGK + K + RH++ G++P Y+CP+C Q A+L H
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAH 96
Score = 27.0 bits (61), Expect = 0.69
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 36 CDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTH 81
C CGK + + + H++ G++P Y+CP+C LT H
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRH 68
Score = 25.5 bits (57), Expect = 2.1
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 36 CDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTH 81
C CGK + ++ ++ H++ G++P Y+CP+C + L H
Sbjct: 136 CPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVH 180
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 27.1 bits (61), Expect = 0.31
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 36 CDVCGKGYKYKNGIYRHKKF---ECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
C C K ++ K + H K + C +C + + H
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Score = 24.4 bits (54), Expect = 3.4
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC 68
F+C CGK + +N + RH G + +
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNCAGPDG-VEGENS 81
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 25.9 bits (58), Expect = 0.44
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 63 YQCPQCPYRAKQNAHLTTHMAI 84
Y+C C R Q AHL H+ I
Sbjct: 12 YKCETCGARFVQVAHLRAHVLI 33
>3f79_A Probable two-component response regulator; adaptor, signaling
protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A
Length = 255
Score = 27.2 bits (61), Expect = 0.56
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 29 NHAGMFMCDVCGKG 42
++ DV G G
Sbjct: 63 RRVAFYLADVSGHG 76
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 25.0 bits (55), Expect = 0.87
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 60 EPKYQCPQCPYRAKQNAHLTTHM 82
+QCP C ++ HL H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHR 31
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.1 bits (56), Expect = 1.1
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 51 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
G++P Y+C +C ++N+HL H I
Sbjct: 2 SSGSSGTGEKP-YKCHECGKVFRRNSHLARHQLI 34
>2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase
family 31, (beta/alpha)8 barre; HET: PXN; 2.30A
{Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A*
Length = 1020
Score = 26.4 bits (58), Expect = 1.2
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 40 GKGYKYKNGIYRHKKFEC 57
G+ KY+ G +
Sbjct: 910 GRSLKYQQGEWSRIPLSY 927
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 24.9 bits (54), Expect = 1.2
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC 68
C++CGK ++ + RHK G++P Y
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPS 46
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 25.1 bits (54), Expect = 1.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 34 FMCDVCGKGYKYKNGIYRHK 53
+ CD+CGK YK + G+ H
Sbjct: 8 YACDICGKRYKNRPGLSYHY 27
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 24.7 bits (53), Expect = 1.3
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 63 YQCPQCPYRAKQNAHLTTHM 82
+ CP CP R ++ L+ H+
Sbjct: 3 FACPACPKRFMRSDALSKHI 22
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 25.9 bits (58), Expect = 1.3
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCP--QCPYRAKQNAHLTTHMAI 84
+C CGK + + + RH+ G++P +QC C R + +L TH+ I
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTHVRI 86
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 26.4 bits (57), Expect = 1.5
Identities = 7/29 (24%), Positives = 8/29 (27%)
Query: 58 GQEPKYQCPQCPYRAKQNAHLTTHMAIKH 86
YQC C L H+A
Sbjct: 176 SSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese
binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus
subtilis} PDB: 3t9q_A*
Length = 242
Score = 26.1 bits (58), Expect = 1.5
Identities = 3/14 (21%), Positives = 4/14 (28%)
Query: 29 NHAGMFMCDVCGKG 42
+ D G G
Sbjct: 35 RKYAAAISDGMGNG 48
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 25.3 bits (56), Expect = 1.6
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 39 CGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 86
C K + + + RH+K G + C + K H+A H
Sbjct: 39 CDKRFSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWTLYLKHVAECH 85
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 25.7 bits (57), Expect = 1.7
Identities = 8/48 (16%), Positives = 13/48 (27%), Gaps = 1/48 (2%)
Query: 39 CGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 86
G + K + Q C L TH+ ++H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLS-RPKKSCDRTFSTMHELVTHVTMEH 49
Score = 25.7 bits (57), Expect = 1.8
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 8/57 (14%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPK--------YQCPQCPYRAKQNAHLTTHM 82
C + + + + H E P+ +CP+ K L H+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 25.5 bits (55), Expect = 2.1
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 36 CDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMA-IKHY 87
+ K + + E Q+ +C C + + L+ HM KHY
Sbjct: 55 NNPKRWSKPRKRSLLEMEGKEDAQKV-LKCMYCGHSFESLQDLSVHMIKTKHY 106
Score = 25.1 bits (54), Expect = 3.0
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 60 EPKYQCPQCPYRAKQNAHLTTHMAI-KHY 87
K++C C LT HM HY
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMNETGHY 45
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 24.0 bits (53), Expect = 2.2
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 63 YQCPQCPYRAKQNAHLTTHMAI 84
Y C C R + L +H+ I
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRI 33
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 25.2 bits (56), Expect = 2.2
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 39 CGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHM 82
C + + + + RH++ G +P +QC C + ++ HL TH
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSRSDHLKTHT 86
Score = 24.0 bits (53), Expect = 6.4
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQC--PQCPYRAKQNAHLTTHM 82
F C C + + + + H + G++P + C P C + ++ L H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRHH 116
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 24.0 bits (51), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 63 YQCPQCPYRAKQNAHLTTHMAIKH 86
YQC C +R+ +++L TH+ KH
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKH 26
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 24.9 bits (55), Expect = 2.4
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 51 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTHM 82
RH + G +P +QC C ++ HL HM
Sbjct: 65 RHYRKHTGAKP-FQCGVCNRSFSRSDHLALHM 95
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 2.4
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 51 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
G++P ++C +C +QN HL +H+ I
Sbjct: 2 SSGSSGSGEKP-FKCKECGKAFRQNIHLASHLRI 34
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 2.8
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 51 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTH 81
G++P +QC +C R QN+HL +H
Sbjct: 2 SSGSSGSGEKP-FQCEECGKRFTQNSHLHSH 31
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 2.9
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 51 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
G++P Y+C +C QN+HLT H I
Sbjct: 2 SSGSSGSGEKP-YKCNECGKVFTQNSHLTNHWRI 34
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens}
PDB: 2rhp_A*
Length = 634
Score = 25.4 bits (55), Expect = 2.9
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 18/55 (32%)
Query: 32 GMFMCDVCGKGYKYKNGIYRHKKFECGQEPK-----------------YQCPQCP 69
G + C C G+ NG + EC P + C CP
Sbjct: 23 GSWSCGFCPVGFL-GNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCP 76
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 24.8 bits (53), Expect = 3.0
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 32 GMFMCDVCGK-GYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 86
G C C G K G+ +H + C QE + C C + + A + H+ H
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHME-NCKQEM-FTCHHCGKQLRSLAGMKYHVMANH 86
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 24.2 bits (52), Expect = 3.1
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 8/52 (15%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIK 85
C CG + ++ + R K C +C + Q A L +
Sbjct: 19 QKCSKCGIIFIRRSTLSRRK--------TPMCEKCRKDSCQEAALNKDEGNE 62
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 24.4 bits (54), Expect = 3.2
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 34 FMCDV--CGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHM 82
+ CD CG + + + RH + G P +QC +C ++ HL HM
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQKCDRAFSRSDHLALHM 85
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 3.2
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 51 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
G++P Y+C +C QN+HL H I
Sbjct: 2 SSGSSGTGEKP-YKCNECGKVFTQNSHLVRHRGI 34
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB:
1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z*
1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z*
1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Length = 83
Score = 24.4 bits (53), Expect = 3.5
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 51 RHKKFECGQEPKYQCPQCPYRA 72
R + E + CP C
Sbjct: 16 RVAEIESEMNEDHACPNCGEDR 37
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.6 bits (50), Expect = 3.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 63 YQCPQCPYRAKQNAHLTTHMA 83
Y+CPQC Y + A+L H+
Sbjct: 10 YKCPQCSYASAIKANLNVHLR 30
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics,
ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 56
Score = 23.8 bits (51), Expect = 3.8
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 57 CGQEPKYQCPQC 68
C ++PKY+CP C
Sbjct: 18 CLEKPKYRCPAC 29
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix
bundle, rubre like, electron transport; 1.63A
{Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB:
1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A
1ryt_A
Length = 191
Score = 25.1 bits (54), Expect = 3.8
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 13/68 (19%)
Query: 1 MLNVIVKPRTHREPKHNKCLINWSAVQQNHAGMFMCDVCGKGYKYKNGIYRHKKFECGQE 60
+ V + R + + + A + C CG Y H+ G
Sbjct: 123 SIAVAEEFHEKRFLDFARNIKEGRVFLREQATKWRCRNCG---------YVHE----GTG 169
Query: 61 PKYQCPQC 68
CP C
Sbjct: 170 APELCPAC 177
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 4.3
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 51 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
G++P ++C +C Q HLT H +
Sbjct: 2 SSGSSGTGEKP-FKCGECGKSYNQRVHLTQHQRV 34
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.3 bits (49), Expect = 4.3
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 29 NHAGMFMCDVCGKGYKYKNGIYRHKKFECGQE 60
+ +F C+ C K +K+K+ + H + ++
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 23.4 bits (51), Expect = 4.6
Identities = 7/22 (31%), Positives = 7/22 (31%)
Query: 63 YQCPQCPYRAKQNAHLTTHMAI 84
Y C QC Q L H
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRS 33
>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin +
alpha-helix; NMR {Drosophila melanogaster} SCOP:
g.37.1.2 PDB: 1jn7_A
Length = 36
Score = 23.2 bits (49), Expect = 4.8
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 28 QNHAGMFMCDVCGKGYKYKNGIYRHKKFECGQEP 61
C C + Y HK+F C +P
Sbjct: 3 AAEVMKKYCSTCDISFNYVKTYLAHKQFYCKNKP 36
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 5.0
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 51 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
G++P Y+C +C ++ HL H I
Sbjct: 2 SSGSSGSGEKP-YKCSECGKAFHRHTHLNEHRRI 34
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 5.2
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 51 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTH 81
G++P Y+C C Q AHL H
Sbjct: 2 SSGSSGTGEKP-YECKVCSKAFTQKAHLAQH 31
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 5.9
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 51 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
G++P Y C C +AHL H+ +
Sbjct: 2 SSGSSGTGEKP-YSCNVCGKAFVLSAHLNQHLRV 34
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 6.0
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 51 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTH 81
G++P Y+C +C QN+HL H
Sbjct: 2 SSGSSGTGEKP-YKCNECGKVFTQNSHLANH 31
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 6.1
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 51 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTH 81
G++P ++C +C R QN+ L +H
Sbjct: 2 SSGSSGSGEKP-FKCEECGKRFTQNSQLHSH 31
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 24.1 bits (53), Expect = 6.1
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 37 DVCGKGYKYKNGIYRHKKFECGQEPK--YQCPQCPYRAKQNAHLTTHMAIKH 86
+ C K + + + RH+K G K C K H+A H
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFV---GKTWTLYLKHVAECH 188
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 22.9 bits (48), Expect = 6.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 35 MCDVCGKGYKYKNGIYRHK 53
+CD+CGK +K K + HK
Sbjct: 11 LCDMCGKKFKSKGTLKSHK 29
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 24.1 bits (53), Expect = 7.0
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 9/57 (15%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFEC---GQEPKYQCPQCPYRA-----KQNAHLTTHM 82
D C + + + + H E ++ + C K L HM
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGGCSRELRPFKAQYMLVVHM 59
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus}
Length = 72
Score = 23.2 bits (50), Expect = 7.2
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 51 RHKKFECGQEPKYQCPQCPYRA 72
+ KK E Q +Y C C +
Sbjct: 15 QVKKLEIQQHARYDCSFCGKKT 36
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 23.8 bits (50), Expect = 7.6
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 32 GMFMCDVCGK-GYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAIKH 86
G +C C K G+ +H + + +C C + K A L H +H
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.8 bits (50), Expect = 8.0
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQC 65
F CD+CGK + ++ + RH ++P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP-SGP 43
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 23.0 bits (48), Expect = 8.5
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 59 QEPKYQCPQCPYRAKQNAHLTTHMAIKH 86
E Y CP C R K+ ++ H+
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA,
protein-protein; 2.40A {Haloarcula marismortui} SCOP:
g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1*
1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1*
1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Length = 73
Score = 23.2 bits (50), Expect = 8.7
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 51 RHKKFECGQEPKYQCPQCPYRA 72
R + E + KY+CP C +
Sbjct: 16 RVRDVEIKHKKKYKCPVCGFPK 37
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 22.9 bits (50), Expect = 9.0
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQC 68
++C CGKG+ + + H K E ++C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 22.5 bits (49), Expect = 9.0
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 51 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTH 81
G+ P ++C +C Q+AHL H
Sbjct: 2 SSGSSGTGERP-HKCNECGKSFIQSAHLIQH 31
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace
motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Length = 60
Score = 22.8 bits (49), Expect = 9.8
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 4/31 (12%)
Query: 16 HNKCLINWSAVQQNHAGMFMCDVCGKGYKYK 46
H CL W + C +CG Y +
Sbjct: 34 HRSCLSTW----LTISRNTACQICGVVYNTR 60
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.5 bits (49), Expect = 9.8
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 52 HKKFECGQEPKYQCPQCPYRAKQNAHLTTH 81
G++ Y+C C Q++HL TH
Sbjct: 3 SGSSGMGEKC-YKCDVCGKEFSQSSHLQTH 31
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.468
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,276,090
Number of extensions: 59095
Number of successful extensions: 619
Number of sequences better than 10.0: 1
Number of HSP's gapped: 567
Number of HSP's successfully gapped: 236
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)