RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12019
(87 letters)
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 28.4 bits (64), Expect = 0.015
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 63 YQCPQCPYRAKQNAHLTTHMAIKH 86
Y+C C R Q+ + H+ KH
Sbjct: 9 YECYICHARFTQSGTMKMHILQKH 32
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 28.5 bits (63), Expect = 0.023
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
+ C CGK + +K+ RH Y C C + K HL HM I
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHMKI 52
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 27.7 bits (62), Expect = 0.038
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 63 YQCPQCPYRAKQNAHLTTHMAIKH 86
Y C C + HL H+ H
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVH 29
Score = 22.6 bits (49), Expect = 2.4
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 34 FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQC 65
++C CGKG+ + + H K E ++C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.6 bits (59), Expect = 0.086
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 60 EPKYQCPQCPYRAKQNAHLTTHMAIKH 86
E Y C C +Q L H H
Sbjct: 6 EKPYACSHCDKTFRQKQLLDMHFKRYH 32
Score = 21.6 bits (46), Expect = 6.6
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 34 FMCDVCGKGYKYKNGIYRHKK 54
+ C C K ++ K + H K
Sbjct: 9 YACSHCDKTFRQKQLLDMHFK 29
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 26.0 bits (58), Expect = 0.10
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 63 YQCPQCPYRAKQNAHLTTHMAI 84
+ C C + HL H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS 24
Score = 22.2 bits (48), Expect = 3.9
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 34 FMCDVCGKGYKYKNGIYRHKK 54
F+C+VC + + + + RH +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR 23
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 26.4 bits (59), Expect = 0.11
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 63 YQCPQCPYRAKQNAHLTTHMAI 84
Y C +C +++ L H +
Sbjct: 8 YGCVECGKAFSRSSILVQHQRV 29
Score = 23.0 bits (50), Expect = 1.8
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 34 FMCDVCGKGYKYKNGIYRHKK 54
+ C CGK + + + +H++
Sbjct: 8 YGCVECGKAFSRSSILVQHQR 28
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 26.2 bits (58), Expect = 0.12
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 63 YQCPQCPYRAKQNAHLTTHMAI 84
+ CP+CP R ++ HL+ H+
Sbjct: 3 FACPECPKRFMRSDHLSKHIKT 24
Score = 21.1 bits (45), Expect = 9.8
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 34 FMCDVCGKGYKYKNGIYRHKK 54
F C C K + + + +H K
Sbjct: 3 FACPECPKRFMRSDHLSKHIK 23
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 25.6 bits (57), Expect = 0.16
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 63 YQCPQCPYRAKQNAHLTTHMAI 84
+QC C ++ HLTTH+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRT 25
Score = 21.4 bits (46), Expect = 6.2
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 34 FMCDVCGKGYKYKNGIYRHKK 54
F C +C + + + + H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR 24
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 25.5 bits (55), Expect = 0.22
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 63 YQCPQCPYRAKQNAHLTTHMAIKH 86
YQC C +R+ +++L TH+ KH
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKH 26
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 25.1 bits (55), Expect = 0.33
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 51 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 84
R + + + Y+C +C ++ L+ H
Sbjct: 2 RSEWQQRERRR-YKCDECGKSFSHSSDLSKHRRT 34
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 24.6 bits (53), Expect = 0.44
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 60 EPKYQCPQCPYRAKQNAHLTTHM 82
E ++C CPY ++ ++ LT H+
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHL 23
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 23.2 bits (50), Expect = 1.6
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 60 EPKYQCPQCPYRAKQNAHLTTHMAI 84
+ + C C A+ H+ +
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKV 29
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 22.8 bits (48), Expect = 2.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 34 FMCDVCGKGYKYKNGIYRH 52
F+C CGK + +N + RH
Sbjct: 5 FVCSKCGKTFTRRNTMARH 23
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 22.4 bits (48), Expect = 3.7
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 63 YQCPQCPYRAKQNAHLTTHMAI 84
+QCP C ++ HL H
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKR 33
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 21.5 bits (45), Expect = 6.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 63 YQCPQCPYRAKQNAHLTTHMAIKH 86
++C C + KQ ++L+ HM H
Sbjct: 3 FKCNYCSFDTKQPSNLSKHMKKFH 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.136 0.468
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 334,521
Number of extensions: 13718
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 69
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)