BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1202
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGD 63
GH + FITHGG + EA+YHG+P V +P F+DQ N + +G + T +
Sbjct: 83 GHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRVDFNTXSST 142
Query: 64 ILYITIREVLNNPRYRDTVGRLSK 87
L ++ V+N+P Y++ V +LS+
Sbjct: 143 DLLNALKRVINDPSYKENVXKLSR 166
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 49.7 bits (117), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIR 70
FITH G+ S+MEA+ + VP+V +P ++Q N + + E G+G P + +T + L +
Sbjct: 325 FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVL 384
Query: 71 EVLNNPRYRDTVGRLSKQV 89
V ++P + + + +++
Sbjct: 385 AVASDPGVAERLAAVRQEI 403
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%)
Query: 7 NCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILY 66
C + HGG S A HGVP V++P D + +E G G+ P +T D L
Sbjct: 335 TCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLR 394
Query: 67 ITIREVLNNPRYRDTVGRLSKQVRSLP 93
+++ VL++P +R R+ + + P
Sbjct: 395 ESVKRVLDDPAHRAGAARMRDDMLAEP 421
>pdb|3TSA|A Chain A, Spinosyn Rhamnosyltransferase Spng
pdb|3TSA|B Chain B, Spinosyn Rhamnosyltransferase Spng
Length = 391
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDIL 65
R C+L I GG ++ A G+P +++P + DQ + + G G+ P E D
Sbjct: 285 RTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHE 344
Query: 66 YIT--IREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAANKG 112
T I VL + + +LS ++ ++P+ VR E+ AA +
Sbjct: 345 QFTDSIATVLGDTGFAAAAIKLSDEITAMPHPA--ALVRTLENTAAIRA 391
>pdb|3UYK|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYK|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYL|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
pdb|3UYL|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
Length = 387
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDIL 65
R C+L I GG ++ A G+P +++P + DQ + + G G+ P E D
Sbjct: 285 RTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHE 344
Query: 66 YIT--IREVLNNPRYRDTVGRLSKQVRSLPY 94
T I VL + + +LS ++ ++P+
Sbjct: 345 QFTDSIATVLGDTGFAAAAIKLSDEITAMPH 375
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNC--KLMEEKGMGLITPHETITGD 63
R C + HGG + M A+ G+P ++ P DQ Q+ + + +G+GL++ + + D
Sbjct: 298 RTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDAD 357
Query: 64 ILYITIREVLNNPRYRDTVGRLSKQVRSLP 93
+L R ++ + R + +++ +LP
Sbjct: 358 LL----RRLIGDESLRTAAREVREEMVALP 383
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 12 ITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDIL 65
+THGG + EA+Y G P+V++P D + +++ G+G + P E GD L
Sbjct: 318 VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLGAVLPGEKADGDTL 371
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 12 ITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDIL 65
+THGG + EA+Y G P+V++P D + +++ G+G + P E GD L
Sbjct: 318 VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLGAVLPGEKADGDTL 371
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDIL 65
R LF+TH G S E + P++ +P DQ N +++ G+ E T D+L
Sbjct: 298 RQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLL 357
Query: 66 YITIREVLNNPRYRDTVGRLSKQV 89
T ++++P + R+ ++
Sbjct: 358 RETALALVDDPEVARRLRRIQAEM 381
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
Length = 398
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNC--KLMEEKGMGLITPHETITGD 63
R C + HGG + A+ G+P ++ P DQ Q+ + + +G+GL++ + + D
Sbjct: 298 RTCTAVVHHGGGGTVXTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDAD 357
Query: 64 ILYITIREVLNNPRYRDTVGRLSKQVRSLP 93
+L R ++ + R + ++ +LP
Sbjct: 358 LL----RRLIGDESLRTAAREVREEXVALP 383
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE 48
H F+TH G +S E+V GVP++ P F DQ N +++E+
Sbjct: 340 AHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVED 384
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLME---EKGMGL 53
H + +F+TH G +S +E + GVP++ P F DQ N L E E G+G+
Sbjct: 343 HSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGV 394
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 38.9 bits (89), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNC-KLMEEKGMGL 53
H+ F++H G +S +E+++ GVP++ P +++Q N +L++E G+GL
Sbjct: 347 AHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGL 397
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 38.9 bits (89), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNC-KLMEEKGMGL 53
H+ F++H G +S +E+++ GVP++ P +++Q N +L++E G+GL
Sbjct: 347 AHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGL 397
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 40/86 (46%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYI 67
C + + HGG +++ + GVP V +P ++ + +L+ G G+ P E + +
Sbjct: 300 CDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLA 359
Query: 68 TIREVLNNPRYRDTVGRLSKQVRSLP 93
+ ++ Y RL+ + +LP
Sbjct: 360 ACARIRDDSSYVGNARRLAAEXATLP 385
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITP 56
H + F+TH G +S++E+V G+P++ P +++Q N L+ E + P
Sbjct: 354 AHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRP 406
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 40/86 (46%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYI 67
C + + HGG +++ + GVP V +P ++ + +L+ G G+ P E + +
Sbjct: 301 CDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLA 360
Query: 68 TIREVLNNPRYRDTVGRLSKQVRSLP 93
+ ++ Y RL+ + +LP
Sbjct: 361 ACARIRDDSSYVGNARRLAAEXATLP 386
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM 46
F+TH G +S+ E++ GVP++ P F+DQ +C+ +
Sbjct: 375 FLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFI 410
>pdb|2J9R|A Chain A, Thymidine Kinase From B. Anthracis In Complex With Dt
Length = 214
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 18 HSSMEAVYH-GVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76
+S + V H G+ V +P + + + EE + I + GDI+ + +VL N
Sbjct: 70 YSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAIDEVQFFDGDIVEVV--QVLANR 127
Query: 77 RYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAANKGVLGY--TPAAQQTSVMRLLEG 131
YR V L + R LP+ + Q + AEHV + V +PA++ RL++G
Sbjct: 128 GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQAVCSACGSPASR---TQRLIDG 181
>pdb|2JA1|A Chain A, Thymidine Kinase From B. Cereus With Ttp Bound As
Phosphate Donor
Length = 197
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 18 HSSMEAVYH-GVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76
+S + V H G+ V +P + + + EE + I + GDI+ + +VL N
Sbjct: 52 YSEEDVVSHNGLKVKAVPVSASKDIFEHITEELDVIAIDEVQFFDGDIVEVV--QVLANR 109
Query: 77 RYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAANKGVLGY--TPAAQQTSVMRLLEG 131
YR V L + R LP+ + Q + AEHV + V +PA++ RL++G
Sbjct: 110 GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQAVCSVCGSPASR---TQRLIDG 163
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 7 NCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILY 66
C I HGG + + A+ GVP ++P S Q N ++ G+G + G +
Sbjct: 304 TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGF----DAEAGSLGA 359
Query: 67 ITIREVLNNPRYRDTVGRLSKQVRSLP 93
R +L++ R+ R+ +++ +P
Sbjct: 360 EQCRRLLDDAGLREAALRVRQEMSEMP 386
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 7 NCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILY 66
C I HGG + + A+ GVP ++P S Q N ++ G+G + G +
Sbjct: 304 TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGF----DAEAGSLGA 359
Query: 67 ITIREVLNNPRYRDTVGRLSKQVRSLP 93
R +L++ R+ R+ +++ +P
Sbjct: 360 EQCRRLLDDAGLREAALRVRQEMSEMP 386
>pdb|3S2U|A Chain A, Crystal Structure Of The Pseudomonas Aeruginosa
Murg:udp-Glcnac Substrate Complex
Length = 365
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVP--VVMMPGFSDQHQ--NCKLMEEKGMGLITP 56
M + L I G + E G+P +V +P D HQ N + + G G + P
Sbjct: 246 MAAAYAWADLVICRAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLP 305
Query: 57 HETITGDILYITIREVLNNPRYRDTVGRLSKQVRSL 92
++ L + EVL +P +T+ ++ Q RSL
Sbjct: 306 QKSTGAAELAAQLSEVLMHP---ETLRSMADQARSL 338
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQ-NCKLMEEKGMGLI 54
R C +THG + +EA GVP+V++P F+ + + + + E G+G +
Sbjct: 299 RAC---LTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSV 345
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 28.9 bits (63), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 7 NCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGL-ITPHETITGDIL 65
C L + H G S++ + GVP +++P S + + + G + + P E T + +
Sbjct: 279 TCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDST-EAI 337
Query: 66 YITIREVLNNPRYRDTVGRLSKQVRSLP 93
+ +E+ Y LS+++ +P
Sbjct: 338 ADSCQELQAKDTYARRAQDLSREISGMP 365
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 12 ITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGL 53
I HGG ++ A G P +++P +DQ + E G+G+
Sbjct: 306 IHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGV 347
>pdb|3B0P|A Chain A, Trna-Dihydrouridine Synthase From Thermus Thermophilus
pdb|3B0P|B Chain B, Trna-Dihydrouridine Synthase From Thermus Thermophilus
pdb|3B0U|X Chain X, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna Fragment
pdb|3B0U|Y Chain Y, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna Fragment
Length = 350
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 25/114 (21%)
Query: 11 FITHGGIHSSMEAVYH-----GV---------PVVMMPG----FSDQHQNCKLMEEKGMG 52
F+T+GGI S EA++H GV P V+ F + +L + M
Sbjct: 200 FVTNGGIRSLEEALFHLKRVDGVMLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMR 259
Query: 53 LITPHETITGDILYITIREVLNNPRYRDTVGRLSKQV----RSLPYSNLDQAVR 102
E + G + +R +LN R R GRL +++ RSL LD+A+R
Sbjct: 260 AYLEEEVLKGTPPWAVLRHMLNLFRGRPK-GRLWRRLLSEGRSL--QALDRALR 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,212,274
Number of Sequences: 62578
Number of extensions: 160403
Number of successful extensions: 378
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 30
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)