Query psy1202
Match_columns 136
No_of_seqs 119 out of 1422
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 16:35:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00201 UDPGT: UDP-glucoronos 100.0 5.6E-39 1.2E-43 252.8 7.5 134 1-134 335-468 (500)
2 PHA03392 egt ecdysteroid UDP-g 100.0 7.9E-37 1.7E-41 241.1 13.1 133 2-134 359-492 (507)
3 KOG1192|consensus 99.9 1.4E-26 3.1E-31 182.0 12.2 130 3-134 350-479 (496)
4 PLN02670 transferase, transfer 99.9 1.7E-23 3.6E-28 164.0 12.5 108 1-110 351-465 (472)
5 PLN02554 UDP-glycosyltransfera 99.9 9.7E-23 2.1E-27 160.5 11.3 108 2-109 355-478 (481)
6 PLN02208 glycosyltransferase f 99.9 2.2E-22 4.8E-27 156.9 12.5 106 1-107 323-437 (442)
7 PLN02562 UDP-glycosyltransfera 99.9 9.2E-22 2E-26 153.8 12.6 103 2-106 341-446 (448)
8 PLN02207 UDP-glycosyltransfera 99.9 1.2E-21 2.7E-26 153.4 12.3 109 1-109 344-465 (468)
9 PLN02410 UDP-glucoronosyl/UDP- 99.9 2E-21 4.3E-26 151.9 12.3 105 2-107 337-448 (451)
10 COG1819 Glycosyl transferases, 99.9 4.8E-21 1E-25 148.1 13.0 105 6-112 299-403 (406)
11 PLN02764 glycosyltransferase f 99.9 6.4E-21 1.4E-25 148.7 13.1 110 1-111 329-447 (453)
12 PLN00414 glycosyltransferase f 99.9 5.9E-21 1.3E-25 149.0 12.7 110 2-112 325-443 (446)
13 PLN02210 UDP-glucosyl transfer 99.9 4.6E-21 1E-25 150.1 11.9 106 2-107 337-453 (456)
14 PLN02167 UDP-glycosyltransfera 99.9 4.8E-21 1E-25 150.7 11.7 108 2-109 353-472 (475)
15 PLN03004 UDP-glycosyltransfera 99.9 3.8E-21 8.2E-26 150.2 9.9 91 1-91 346-440 (451)
16 PLN02555 limonoid glucosyltran 99.8 1.7E-20 3.7E-25 147.5 13.1 109 2-110 350-470 (480)
17 PLN02992 coniferyl-alcohol glu 99.8 1.8E-20 3.8E-25 147.3 12.6 91 2-92 351-447 (481)
18 PLN03007 UDP-glucosyltransfera 99.8 1.7E-20 3.7E-25 147.9 12.1 108 1-108 357-479 (482)
19 PLN00164 glucosyltransferase; 99.8 1.6E-20 3.4E-25 147.9 11.7 109 2-110 352-474 (480)
20 PLN02863 UDP-glucoronosyl/UDP- 99.8 2.5E-20 5.3E-25 146.6 12.5 109 2-110 356-472 (477)
21 PLN02448 UDP-glycosyltransfera 99.8 2.3E-20 5E-25 146.4 12.4 107 2-108 336-456 (459)
22 PLN02173 UDP-glucosyl transfer 99.8 3.3E-20 7.2E-25 144.8 12.1 106 2-107 330-446 (449)
23 PLN02152 indole-3-acetate beta 99.8 4E-20 8.7E-25 144.6 11.8 105 2-106 340-453 (455)
24 TIGR01426 MGT glycosyltransfer 99.8 1.7E-19 3.7E-24 138.5 12.8 102 6-109 290-391 (392)
25 PLN03015 UDP-glucosyl transfer 99.8 3.3E-19 7.2E-24 139.7 12.0 91 2-92 348-448 (470)
26 cd03784 GT1_Gtf_like This fami 99.8 5.4E-19 1.2E-23 135.7 10.8 98 6-106 303-400 (401)
27 PLN02534 UDP-glycosyltransfera 99.8 1.2E-18 2.6E-23 137.4 12.9 109 2-110 357-487 (491)
28 COG0707 MurG UDP-N-acetylgluco 99.6 1.4E-14 3E-19 110.5 10.6 102 5-108 250-355 (357)
29 PF04101 Glyco_tran_28_C: Glyc 99.6 3.7E-15 8E-20 102.2 4.4 79 6-84 71-153 (167)
30 PRK12446 undecaprenyldiphospho 99.6 7.5E-14 1.6E-18 106.4 11.7 95 6-105 251-350 (352)
31 PRK00726 murG undecaprenyldiph 99.5 3.1E-13 6.6E-18 102.5 12.6 102 6-109 251-356 (357)
32 PF13528 Glyco_trans_1_3: Glyc 99.4 3.6E-13 7.7E-18 100.6 7.4 67 6-72 249-317 (318)
33 TIGR00661 MJ1255 conserved hyp 99.4 8E-13 1.7E-17 99.4 6.7 70 6-78 246-317 (321)
34 TIGR01133 murG undecaprenyldip 99.3 2.7E-11 6E-16 91.1 10.9 96 6-103 249-347 (348)
35 PRK13608 diacylglycerol glucos 99.3 4E-11 8.6E-16 92.5 11.9 99 6-110 272-371 (391)
36 cd03785 GT1_MurG MurG is an N- 99.3 6E-11 1.3E-15 89.4 11.0 95 6-102 251-349 (350)
37 PLN02605 monogalactosyldiacylg 99.2 1.6E-10 3.4E-15 88.8 12.1 98 6-109 281-380 (382)
38 PRK13609 diacylglycerol glucos 99.2 5.7E-10 1.2E-14 85.4 12.5 99 6-110 272-371 (380)
39 COG1519 KdtA 3-deoxy-D-manno-o 99.0 1.6E-09 3.4E-14 83.3 8.9 90 11-105 327-416 (419)
40 TIGR03492 conserved hypothetic 99.0 7E-09 1.5E-13 80.4 12.0 96 6-107 295-395 (396)
41 COG4671 Predicted glycosyl tra 98.9 4.7E-09 1E-13 79.1 6.6 96 7-111 294-392 (400)
42 PRK00025 lpxB lipid-A-disaccha 98.9 2.2E-08 4.7E-13 76.5 10.4 104 6-110 260-377 (380)
43 PRK05749 3-deoxy-D-manno-octul 98.9 4.8E-08 1E-12 75.9 12.0 100 6-109 318-422 (425)
44 TIGR00215 lpxB lipid-A-disacch 98.8 2E-08 4.4E-13 77.5 7.0 99 6-105 266-383 (385)
45 KOG3349|consensus 98.5 2.7E-07 5.8E-12 62.0 4.4 52 6-57 79-134 (170)
46 cd03814 GT1_like_2 This family 98.3 9.6E-06 2.1E-10 60.3 10.6 93 7-107 266-362 (364)
47 TIGR00236 wecB UDP-N-acetylglu 98.3 4.7E-06 1E-10 63.5 8.5 91 6-106 273-363 (365)
48 PRK14089 ipid-A-disaccharide s 98.1 6.8E-06 1.5E-10 62.8 6.0 96 6-106 234-346 (347)
49 PF00534 Glycos_transf_1: Glyc 98.1 2.4E-05 5.3E-10 53.1 7.9 75 8-88 93-171 (172)
50 cd03820 GT1_amsD_like This fam 98.1 6.5E-05 1.4E-09 55.0 10.1 79 7-91 252-335 (348)
51 cd03786 GT1_UDP-GlcNAc_2-Epime 98.0 1E-05 2.2E-10 61.3 5.1 70 6-83 276-345 (363)
52 cd05844 GT1_like_7 Glycosyltra 98.0 8.1E-05 1.7E-09 56.1 9.6 70 16-91 283-352 (367)
53 COG5017 Uncharacterized conser 98.0 5.6E-05 1.2E-09 50.2 7.5 50 8-57 66-123 (161)
54 cd03801 GT1_YqgM_like This fam 98.0 0.0001 2.2E-09 54.1 9.8 94 7-107 275-372 (374)
55 PF13524 Glyco_trans_1_2: Glyc 98.0 0.00013 2.8E-09 44.8 8.8 83 14-104 9-91 (92)
56 COG3980 spsG Spore coat polysa 98.0 2.1E-05 4.5E-10 58.1 5.7 84 6-91 226-309 (318)
57 cd03808 GT1_cap1E_like This fa 97.9 0.00012 2.7E-09 53.7 9.9 79 7-91 263-345 (359)
58 cd03823 GT1_ExpE7_like This fa 97.9 0.00018 3.8E-09 53.3 10.7 79 7-91 262-345 (359)
59 cd03794 GT1_wbuB_like This fam 97.9 6.7E-05 1.4E-09 55.8 8.4 70 17-92 313-382 (394)
60 cd03822 GT1_ecORF704_like This 97.9 0.00018 3.9E-09 53.6 9.7 92 7-107 267-364 (366)
61 cd03807 GT1_WbnK_like This fam 97.9 0.00023 5E-09 52.5 10.0 91 7-106 268-362 (365)
62 cd03821 GT1_Bme6_like This fam 97.8 0.00022 4.7E-09 52.8 9.8 80 7-94 281-364 (375)
63 TIGR03088 stp2 sugar transfera 97.8 0.00028 6.1E-09 53.6 10.5 95 7-108 272-370 (374)
64 TIGR03087 stp1 sugar transfera 97.8 0.00019 4.1E-09 55.4 9.5 94 7-109 297-395 (397)
65 cd03795 GT1_like_4 This family 97.8 0.0002 4.3E-09 53.5 9.3 71 17-92 279-349 (357)
66 cd04962 GT1_like_5 This family 97.8 0.00034 7.4E-09 52.7 10.7 94 7-107 270-367 (371)
67 TIGR02149 glgA_Coryne glycogen 97.8 0.00056 1.2E-08 52.1 11.9 97 6-107 279-383 (388)
68 PRK15427 colanic acid biosynth 97.8 0.00037 7.9E-09 54.3 11.0 85 17-108 318-403 (406)
69 cd04946 GT1_AmsK_like This fam 97.8 0.00024 5.2E-09 55.2 9.3 85 6-95 309-397 (407)
70 TIGR02472 sucr_P_syn_N sucrose 97.7 0.00056 1.2E-08 53.6 10.9 94 8-108 341-438 (439)
71 cd03800 GT1_Sucrose_synthase T 97.7 0.00046 1E-08 52.4 9.8 78 7-90 302-383 (398)
72 TIGR03449 mycothiol_MshA UDP-N 97.7 0.00096 2.1E-08 51.3 11.5 94 7-108 302-399 (405)
73 cd03817 GT1_UGDG_like This fam 97.7 0.00046 1E-08 51.1 9.1 78 7-91 278-359 (374)
74 cd03818 GT1_ExpC_like This fam 97.7 0.00032 6.8E-09 54.1 8.4 70 17-92 314-383 (396)
75 PRK15484 lipopolysaccharide 1, 97.6 0.0011 2.4E-08 51.1 10.9 96 7-109 276-376 (380)
76 cd03825 GT1_wcfI_like This fam 97.6 0.001 2.2E-08 49.7 10.5 95 7-108 264-362 (365)
77 cd03792 GT1_Trehalose_phosphor 97.6 0.00091 2E-08 51.0 10.2 93 6-107 272-368 (372)
78 cd03798 GT1_wlbH_like This fam 97.6 0.0016 3.5E-08 47.9 10.5 66 7-78 278-347 (377)
79 PLN02871 UDP-sulfoquinovose:DA 97.5 0.0016 3.4E-08 51.5 10.8 90 7-104 331-427 (465)
80 cd03799 GT1_amsK_like This is 97.5 0.0012 2.7E-08 49.1 9.3 71 15-91 273-343 (355)
81 cd04951 GT1_WbdM_like This fam 97.5 0.00088 1.9E-08 50.0 8.5 91 7-107 262-357 (360)
82 cd03816 GT1_ALG1_like This fam 97.4 0.0013 2.9E-08 51.2 9.2 67 17-91 331-400 (415)
83 cd03813 GT1_like_3 This family 97.4 0.0025 5.3E-08 50.6 9.9 80 7-92 370-459 (475)
84 cd04949 GT1_gtfA_like This fam 97.3 0.00098 2.1E-08 50.6 7.2 79 7-90 278-360 (372)
85 PRK09922 UDP-D-galactose:(gluc 97.3 0.0026 5.7E-08 48.4 9.2 78 7-90 257-341 (359)
86 cd03812 GT1_CapH_like This fam 97.3 0.0014 3.1E-08 48.9 7.7 74 8-88 267-344 (358)
87 PF13844 Glyco_transf_41: Glyc 97.3 0.002 4.3E-08 51.2 8.5 101 6-109 360-465 (468)
88 cd03819 GT1_WavL_like This fam 97.2 0.0023 5E-08 47.8 8.1 79 7-91 263-347 (355)
89 PRK10307 putative glycosyl tra 97.2 0.0057 1.2E-07 47.3 10.4 83 18-107 322-404 (412)
90 cd03811 GT1_WabH_like This fam 97.1 0.0045 9.7E-08 45.2 8.1 72 7-84 263-341 (353)
91 TIGR03590 PseG pseudaminic aci 97.0 0.00067 1.4E-08 50.4 3.5 28 18-45 251-278 (279)
92 cd03809 GT1_mtfB_like This fam 97.0 0.0019 4E-08 48.0 5.9 69 16-92 285-353 (365)
93 cd03804 GT1_wbaZ_like This fam 96.9 0.0022 4.8E-08 48.3 5.1 77 7-89 261-341 (351)
94 cd03805 GT1_ALG2_like This fam 96.8 0.0088 1.9E-07 45.5 8.2 67 17-90 313-379 (392)
95 TIGR02468 sucrsPsyn_pln sucros 96.8 0.017 3.7E-07 50.0 10.2 78 8-91 572-653 (1050)
96 cd04955 GT1_like_6 This family 96.7 0.014 3.1E-07 43.5 8.4 79 17-106 282-360 (363)
97 PHA01630 putative group 1 glyc 96.6 0.034 7.3E-07 42.4 9.6 98 7-109 209-329 (331)
98 COG0381 WecB UDP-N-acetylgluco 96.5 0.012 2.7E-07 45.4 7.1 94 7-110 281-374 (383)
99 PRK09814 beta-1,6-galactofuran 96.5 0.013 2.7E-07 44.4 6.9 67 18-92 251-319 (333)
100 PRK10017 colanic acid biosynth 96.4 0.07 1.5E-06 42.1 10.9 82 6-91 326-409 (426)
101 PF02350 Epimerase_2: UDP-N-ac 96.4 0.014 3.1E-07 44.7 6.8 87 7-104 258-345 (346)
102 PRK15179 Vi polysaccharide bio 96.4 0.047 1E-06 45.7 10.0 76 7-86 591-674 (694)
103 cd03796 GT1_PIG-A_like This fa 96.3 0.061 1.3E-06 41.5 9.9 63 7-77 269-335 (398)
104 PLN00142 sucrose synthase 96.3 0.072 1.6E-06 45.2 10.6 95 8-109 667-769 (815)
105 PF04007 DUF354: Protein of un 96.3 0.047 1E-06 41.8 8.8 87 7-108 248-334 (335)
106 TIGR02470 sucr_synth sucrose s 96.2 0.077 1.7E-06 44.9 10.5 94 8-108 644-745 (784)
107 TIGR02918 accessory Sec system 96.1 0.07 1.5E-06 42.9 9.6 80 8-91 393-482 (500)
108 PHA01633 putative glycosyl tra 96.0 0.063 1.4E-06 41.1 8.4 67 6-74 222-306 (335)
109 TIGR03713 acc_sec_asp1 accesso 96.0 0.027 5.8E-07 45.6 6.6 74 7-91 428-504 (519)
110 PRK15490 Vi polysaccharide bio 95.9 0.12 2.6E-06 42.3 9.9 98 6-110 471-575 (578)
111 PRK01021 lpxB lipid-A-disaccha 95.8 0.11 2.3E-06 42.8 9.4 83 6-90 487-586 (608)
112 TIGR02095 glgA glycogen/starch 95.8 0.076 1.6E-06 42.0 8.3 97 6-108 364-470 (473)
113 cd03791 GT1_Glycogen_synthase_ 95.8 0.037 8E-07 43.6 6.5 96 6-107 369-473 (476)
114 PLN02275 transferase, transfer 95.7 0.044 9.4E-07 42.1 6.5 60 6-73 305-371 (371)
115 PF13692 Glyco_trans_1_4: Glyc 95.6 0.011 2.5E-07 38.2 2.6 52 16-75 84-135 (135)
116 PLN02846 digalactosyldiacylgly 95.5 0.15 3.3E-06 40.7 8.9 90 7-112 300-393 (462)
117 PLN02949 transferase, transfer 95.4 0.084 1.8E-06 42.1 7.5 70 18-91 369-439 (463)
118 TIGR03568 NeuC_NnaA UDP-N-acet 95.4 0.029 6.2E-07 43.3 4.7 65 6-82 280-345 (365)
119 PRK00654 glgA glycogen synthas 95.3 0.085 1.8E-06 41.8 7.1 97 6-108 355-460 (466)
120 PF02684 LpxB: Lipid-A-disacch 95.2 0.14 3.1E-06 39.7 7.8 84 7-91 260-356 (373)
121 cd04950 GT1_like_1 Glycosyltra 94.9 0.28 6.1E-06 37.6 8.8 50 17-76 292-341 (373)
122 COG0763 LpxB Lipid A disacchar 94.6 0.25 5.4E-06 38.4 7.7 99 7-108 264-379 (381)
123 cd03806 GT1_ALG11_like This fa 94.4 0.14 3E-06 40.1 6.1 61 18-85 339-403 (419)
124 cd03802 GT1_AviGT4_like This f 94.3 0.22 4.8E-06 36.7 6.8 52 17-76 258-309 (335)
125 TIGR02400 trehalose_OtsA alpha 94.2 0.58 1.2E-05 37.3 9.3 88 6-108 354-451 (456)
126 PRK14099 glycogen synthase; Pr 94.1 0.31 6.7E-06 39.1 7.6 96 7-108 369-476 (485)
127 PLN02501 digalactosyldiacylgly 94.0 0.14 3.1E-06 42.9 5.7 87 6-108 617-707 (794)
128 PF04464 Glyphos_transf: CDP-G 93.3 0.21 4.5E-06 38.2 5.2 94 7-105 269-368 (369)
129 PRK10125 putative glycosyl tra 93.1 0.82 1.8E-05 35.7 8.3 56 7-69 306-365 (405)
130 KOG0853|consensus 92.3 0.17 3.8E-06 40.6 3.6 86 18-108 380-465 (495)
131 cd03788 GT1_TPS Trehalose-6-Ph 92.2 0.9 1.9E-05 36.2 7.5 76 6-90 359-443 (460)
132 COG0438 RfaG Glycosyltransfera 91.9 3.4 7.4E-05 29.5 10.1 61 18-84 291-351 (381)
133 COG3914 Spy Predicted O-linked 91.8 1.8 3.9E-05 35.6 8.7 74 5-83 506-585 (620)
134 PRK14098 glycogen synthase; Pr 91.5 0.83 1.8E-05 36.7 6.7 95 6-108 380-483 (489)
135 PRK04885 ppnK inorganic polyph 91.3 0.69 1.5E-05 34.3 5.6 54 7-76 35-94 (265)
136 COG4370 Uncharacterized protei 91.2 2 4.2E-05 32.9 7.9 78 23-104 326-407 (412)
137 cd01635 Glycosyltransferase_GT 91.0 0.36 7.8E-06 33.1 3.8 31 7-37 181-215 (229)
138 PRK02649 ppnK inorganic polyph 90.9 0.8 1.7E-05 34.7 5.7 54 7-76 68-125 (305)
139 PRK02155 ppnK NAD(+)/NADH kina 90.2 1.2 2.5E-05 33.5 6.0 54 7-76 63-120 (291)
140 KOG4626|consensus 90.0 0.89 1.9E-05 37.9 5.5 67 15-84 846-913 (966)
141 PRK14077 pnk inorganic polypho 89.7 1.3 2.7E-05 33.3 5.9 54 7-76 64-121 (287)
142 cd03793 GT1_Glycogen_synthase_ 89.3 3.5 7.6E-05 34.1 8.4 78 6-85 473-561 (590)
143 PRK01911 ppnK inorganic polyph 89.2 1.4 3E-05 33.2 5.8 54 7-76 64-121 (292)
144 PLN02316 synthase/transferase 88.9 4.5 9.7E-05 35.7 9.3 101 5-108 917-1031(1036)
145 PRK03372 ppnK inorganic polyph 88.8 1.5 3.2E-05 33.3 5.7 54 7-76 72-129 (306)
146 PRK04539 ppnK inorganic polyph 88.4 1.3 2.8E-05 33.4 5.2 54 7-76 68-125 (296)
147 TIGR02919 accessory Sec system 88.1 2.8 6E-05 33.4 7.0 68 11-86 353-423 (438)
148 PRK03501 ppnK inorganic polyph 88.0 1.8 3.8E-05 32.1 5.6 56 6-76 38-98 (264)
149 PLN03063 alpha,alpha-trehalose 87.9 8.1 0.00018 33.2 10.1 77 6-90 374-460 (797)
150 PRK01185 ppnK inorganic polyph 87.9 2 4.3E-05 32.0 5.8 54 7-76 52-106 (271)
151 PRK03378 ppnK inorganic polyph 87.9 1.8 4E-05 32.5 5.7 54 7-76 63-120 (292)
152 PRK14075 pnk inorganic polypho 87.7 2.3 5E-05 31.3 6.0 55 6-76 40-95 (256)
153 PRK02231 ppnK inorganic polyph 86.3 1.8 3.9E-05 32.2 4.9 53 7-75 42-98 (272)
154 COG1817 Uncharacterized protei 86.1 5 0.00011 30.7 7.1 89 8-110 253-342 (346)
155 PLN02935 Bifunctional NADH kin 86.1 2.7 5.8E-05 34.1 5.9 55 6-76 261-319 (508)
156 PRK03708 ppnK inorganic polyph 86.0 2.3 4.9E-05 31.7 5.3 54 7-76 57-113 (277)
157 PRK01231 ppnK inorganic polyph 85.5 3.1 6.7E-05 31.3 5.8 54 7-76 62-119 (295)
158 PLN02939 transferase, transfer 84.9 6.4 0.00014 34.5 7.9 96 6-107 855-963 (977)
159 PRK14076 pnk inorganic polypho 84.4 3.2 7E-05 34.1 5.9 54 7-76 348-405 (569)
160 PF06506 PrpR_N: Propionate ca 81.8 0.53 1.1E-05 32.5 0.4 33 4-37 31-63 (176)
161 PLN02727 NAD kinase 80.8 5.7 0.00012 34.6 6.1 55 6-76 742-800 (986)
162 PLN02929 NADH kinase 80.4 7.9 0.00017 29.4 6.2 67 6-76 63-138 (301)
163 PF06258 Mito_fiss_Elm1: Mitoc 78.4 6.9 0.00015 29.7 5.4 48 10-57 232-282 (311)
164 PRK04761 ppnK inorganic polyph 78.1 9.3 0.0002 28.1 5.9 55 6-75 24-82 (246)
165 smart00096 UTG Uteroglobin. 77.5 12 0.00026 22.0 5.9 50 61-110 17-66 (69)
166 TIGR02398 gluc_glyc_Psyn gluco 77.2 15 0.00033 29.8 7.3 87 8-109 382-478 (487)
167 PRK14501 putative bifunctional 75.8 4.7 0.0001 34.1 4.3 75 6-89 360-444 (726)
168 PF07429 Glyco_transf_56: 4-al 75.2 13 0.00028 28.9 6.1 55 15-73 277-331 (360)
169 PF09547 Spore_IV_A: Stage IV 72.9 24 0.00051 28.5 7.1 74 2-75 141-235 (492)
170 cd00633 Secretoglobin Secretog 71.9 16 0.00035 20.9 6.1 50 61-110 15-64 (67)
171 PRK00561 ppnK inorganic polyph 71.1 15 0.00033 27.2 5.6 29 6-34 32-64 (259)
172 TIGR00730 conserved hypothetic 67.5 22 0.00048 24.7 5.5 44 8-51 97-153 (178)
173 COG3195 Uncharacterized protei 67.5 39 0.00084 23.4 6.5 48 39-86 110-157 (176)
174 PRK02645 ppnK inorganic polyph 64.0 10 0.00023 28.6 3.6 29 7-35 57-89 (305)
175 COG4641 Uncharacterized protei 63.3 72 0.0016 25.1 8.1 83 17-108 277-360 (373)
176 PRK02797 4-alpha-L-fucosyltran 62.7 32 0.0007 26.3 5.9 63 5-71 226-290 (322)
177 PF00731 AIRC: AIR carboxylase 62.6 29 0.00062 23.6 5.1 84 6-91 54-148 (150)
178 PF00982 Glyco_transf_20: Glyc 61.2 40 0.00087 27.2 6.6 83 13-109 381-470 (474)
179 COG3660 Predicted nucleoside-d 60.3 48 0.001 25.1 6.2 51 7-57 244-299 (329)
180 PRK15424 propionate catabolism 59.6 11 0.00024 30.9 3.2 33 4-37 61-93 (538)
181 PF05159 Capsule_synth: Capsul 58.6 11 0.00025 27.4 2.9 26 7-33 199-224 (269)
182 PLN03064 alpha,alpha-trehalose 56.8 41 0.00089 29.7 6.2 78 7-91 459-544 (934)
183 TIGR00725 conserved hypothetic 56.7 39 0.00084 22.9 5.1 29 8-36 92-124 (159)
184 cd07038 TPP_PYR_PDC_IPDC_like 56.3 60 0.0013 21.9 6.4 27 8-34 60-92 (162)
185 TIGR02329 propionate_PrpR prop 55.9 13 0.00029 30.3 3.1 32 5-37 52-83 (526)
186 TIGR02193 heptsyl_trn_I lipopo 55.3 31 0.00068 25.6 4.9 63 6-73 253-319 (319)
187 TIGR00732 dprA DNA protecting 53.8 45 0.00097 24.0 5.2 46 17-67 171-218 (220)
188 cd07039 TPP_PYR_POX Pyrimidine 53.8 67 0.0015 21.7 7.5 28 7-34 63-96 (164)
189 COG2327 WcaK Polysaccharide py 52.6 1.1E+02 0.0025 24.1 8.7 71 7-81 285-357 (385)
190 PHA02754 hypothetical protein; 52.5 29 0.00062 19.6 3.2 26 67-92 5-30 (67)
191 COG3199 Predicted inorganic po 51.1 61 0.0013 25.2 5.7 30 6-35 99-131 (355)
192 COG1560 HtrB Lauroyl/myristoyl 51.0 1.1E+02 0.0024 23.3 7.9 41 12-52 107-148 (308)
193 PF01099 Uteroglobin: Uteroglo 50.3 47 0.001 19.0 4.1 49 61-109 15-63 (67)
194 PF01513 NAD_kinase: ATP-NAD k 49.7 22 0.00047 26.5 3.2 31 5-35 74-108 (285)
195 PLN02496 probable phosphopanto 49.6 95 0.0021 22.3 6.3 35 22-56 127-168 (209)
196 cd07035 TPP_PYR_POX_like Pyrim 49.0 74 0.0016 20.9 7.8 27 8-34 60-92 (155)
197 PRK13057 putative lipid kinase 48.6 25 0.00054 26.0 3.4 30 6-35 49-82 (287)
198 TIGR02836 spore_IV_A stage IV 48.3 1.1E+02 0.0024 24.9 6.9 71 5-75 144-235 (492)
199 PRK07313 phosphopantothenoylcy 47.8 93 0.002 21.6 6.7 48 27-74 113-179 (182)
200 KOG4180|consensus 47.8 10 0.00022 29.2 1.1 28 6-33 104-135 (395)
201 PF03641 Lysine_decarbox: Poss 47.6 54 0.0012 21.4 4.5 44 8-51 54-111 (133)
202 PRK06270 homoserine dehydrogen 46.8 54 0.0012 25.1 5.0 53 3-55 85-149 (341)
203 PRK13059 putative lipid kinase 46.5 24 0.00053 26.3 3.0 30 6-35 55-90 (295)
204 cd07037 TPP_PYR_MenD Pyrimidin 46.2 38 0.00082 23.1 3.7 28 7-34 60-93 (162)
205 smart00046 DAGKc Diacylglycero 45.9 24 0.00052 22.7 2.6 29 7-35 49-86 (124)
206 KOG0257|consensus 44.0 46 0.00099 26.5 4.2 111 3-116 89-225 (420)
207 COG0061 nadF NAD kinase [Coenz 43.9 52 0.0011 24.5 4.4 53 6-74 54-110 (281)
208 PRK11914 diacylglycerol kinase 43.9 30 0.00064 25.8 3.2 30 6-35 63-96 (306)
209 PRK13054 lipid kinase; Reviewe 43.7 33 0.00071 25.6 3.4 30 6-35 55-92 (300)
210 TIGR00147 lipid kinase, YegS/R 43.2 33 0.00072 25.3 3.3 29 7-35 57-91 (293)
211 PF12689 Acid_PPase: Acid Phos 42.5 25 0.00053 24.3 2.4 48 25-72 119-166 (169)
212 PF15024 Glyco_transf_18: Glyc 42.2 30 0.00066 28.6 3.1 70 7-76 341-431 (559)
213 PRK12446 undecaprenyldiphospho 41.9 26 0.00057 26.8 2.7 30 4-33 88-120 (352)
214 PF05693 Glycogen_syn: Glycoge 41.6 1.2E+02 0.0025 25.7 6.3 54 19-73 485-541 (633)
215 COG1618 Predicted nucleotide k 41.2 94 0.002 21.7 4.9 55 19-75 122-177 (179)
216 COG3563 KpsC Capsule polysacch 40.6 2.1E+02 0.0046 23.7 8.3 99 21-135 238-339 (671)
217 PRK13798 putative OHCU decarbo 40.5 1.2E+02 0.0026 20.8 6.9 50 39-88 102-154 (166)
218 TIGR02482 PFKA_ATP 6-phosphofr 39.5 51 0.0011 25.0 3.8 31 6-36 90-124 (301)
219 PF07631 PSD4: Protein of unkn 39.1 77 0.0017 20.8 4.2 31 61-91 34-64 (128)
220 PRK14116 gpmA phosphoglyceromu 38.7 25 0.00053 25.2 2.0 24 7-30 175-198 (228)
221 PF12965 DUF3854: Domain of un 38.6 47 0.001 21.8 3.1 34 2-36 5-38 (130)
222 PRK10736 hypothetical protein; 38.0 1.2E+02 0.0026 23.9 5.7 52 14-70 230-284 (374)
223 TIGR00661 MJ1255 conserved hyp 37.7 32 0.0007 25.7 2.6 28 6-33 92-119 (321)
224 KOG1111|consensus 37.7 1.4E+02 0.003 23.7 5.9 15 19-33 287-301 (426)
225 TIGR02113 coaC_strep phosphopa 37.6 1.4E+02 0.003 20.7 6.5 31 26-56 111-148 (177)
226 PRK13055 putative lipid kinase 37.6 47 0.001 25.3 3.4 29 7-35 59-93 (334)
227 PRK14119 gpmA phosphoglyceromu 36.8 30 0.00065 24.7 2.2 22 8-29 176-197 (228)
228 PRK13463 phosphatase PhoE; Pro 36.5 31 0.00067 24.1 2.2 23 8-30 145-167 (203)
229 PRK13337 putative lipid kinase 36.2 51 0.0011 24.6 3.4 30 6-35 56-91 (304)
230 TIGR02483 PFK_mixed phosphofru 35.5 63 0.0014 24.7 3.8 31 6-36 93-126 (324)
231 PRK03202 6-phosphofructokinase 35.5 65 0.0014 24.6 3.9 31 6-36 92-125 (320)
232 KOG3125|consensus 35.1 65 0.0014 23.2 3.5 49 8-56 71-137 (234)
233 TIGR03848 MSMEG_4193 probable 35.0 43 0.00093 23.3 2.7 23 8-30 146-168 (204)
234 cd07766 DHQ_Fe-ADH Dehydroquin 34.9 52 0.0011 24.8 3.3 30 6-36 77-113 (332)
235 PF05225 HTH_psq: helix-turn-h 34.8 73 0.0016 16.7 3.5 25 61-85 1-26 (45)
236 PRK07525 sulfoacetaldehyde ace 34.3 1.8E+02 0.0039 24.0 6.5 29 6-34 67-101 (588)
237 PF02481 DNA_processg_A: DNA r 34.1 74 0.0016 22.7 3.8 40 15-55 169-210 (212)
238 PRK06276 acetolactate synthase 34.1 2.3E+02 0.0051 23.3 7.2 28 7-34 63-96 (586)
239 PRK14118 gpmA phosphoglyceromu 34.0 33 0.00072 24.5 2.0 23 8-30 175-197 (227)
240 TIGR03162 ribazole_cobC alpha- 33.5 35 0.00076 22.9 2.0 22 8-29 139-160 (177)
241 PF07862 Nif11: Nitrogen fixat 33.0 80 0.0017 16.6 3.7 25 61-85 2-26 (49)
242 PRK06555 pyrophosphate--fructo 32.8 62 0.0014 25.7 3.4 31 5-35 110-149 (403)
243 PRK14117 gpmA phosphoglyceromu 32.2 37 0.00081 24.3 2.0 24 7-30 175-198 (230)
244 PF14350 Beta_protein: Beta pr 32.0 58 0.0013 24.8 3.2 45 29-73 99-146 (347)
245 TIGR02638 lactal_redase lactal 31.6 60 0.0013 25.2 3.2 30 6-36 85-139 (379)
246 TIGR03798 ocin_TIGR03798 bacte 31.6 92 0.002 17.5 3.3 23 63-85 2-24 (64)
247 PRK05920 aromatic acid decarbo 31.4 1E+02 0.0022 22.0 4.1 35 22-56 125-163 (204)
248 PTZ00122 phosphoglycerate muta 31.3 50 0.0011 24.9 2.7 23 8-30 234-256 (299)
249 PF04558 tRNA_synt_1c_R1: Glut 31.3 57 0.0012 22.4 2.7 30 40-74 102-131 (164)
250 cd00763 Bacterial_PFK Phosphof 31.0 81 0.0018 24.1 3.8 30 6-35 91-123 (317)
251 cd08177 MAR Maleylacetate redu 30.7 71 0.0015 24.3 3.4 31 6-37 76-111 (337)
252 TIGR00421 ubiX_pad polyprenyl 30.6 1.9E+02 0.004 20.1 6.8 35 22-56 107-145 (181)
253 PRK01112 phosphoglyceromutase; 30.6 41 0.00089 24.2 2.0 24 7-30 174-197 (228)
254 PRK15004 alpha-ribazole phosph 30.0 42 0.00092 23.2 2.0 23 8-30 143-165 (199)
255 TIGR02699 archaeo_AfpA archaeo 29.7 1.5E+02 0.0033 20.5 4.7 16 21-36 109-124 (174)
256 PF03592 Terminase_2: Terminas 29.6 1.7E+02 0.0036 19.2 4.9 48 63-110 30-77 (144)
257 TIGR03164 UHCUDC OHCU decarbox 29.4 1.9E+02 0.004 19.7 6.9 49 39-87 97-148 (157)
258 PRK08322 acetolactate synthase 29.3 2.6E+02 0.0055 22.7 6.6 29 6-34 62-96 (547)
259 PF00365 PFK: Phosphofructokin 29.3 43 0.00094 25.0 2.0 30 6-35 91-124 (282)
260 TIGR00173 menD 2-succinyl-5-en 29.2 2.6E+02 0.0057 22.0 6.5 28 6-33 62-95 (432)
261 PRK10117 trehalose-6-phosphate 29.2 2.3E+02 0.005 23.1 6.1 58 43-108 389-448 (474)
262 cd08181 PPD-like 1,3-propanedi 29.1 74 0.0016 24.4 3.3 30 6-36 82-133 (357)
263 PRK14071 6-phosphofructokinase 28.5 96 0.0021 24.1 3.8 31 6-36 106-140 (360)
264 PRK01295 phosphoglyceromutase; 28.3 46 0.001 23.4 1.9 24 7-30 151-174 (206)
265 TIGR00118 acolac_lg acetolacta 28.0 2.1E+02 0.0046 23.3 5.9 27 7-33 64-96 (558)
266 TIGR02814 pfaD_fam PfaD family 27.9 2.9E+02 0.0063 22.3 6.4 58 14-72 5-65 (444)
267 PRK00861 putative lipid kinase 27.7 89 0.0019 23.2 3.5 29 7-35 57-89 (300)
268 PTZ00123 phosphoglycerate muta 27.6 50 0.0011 23.8 2.0 22 8-29 163-184 (236)
269 TIGR01162 purE phosphoribosyla 27.5 2.1E+02 0.0045 19.6 8.1 84 7-91 53-146 (156)
270 TIGR02518 EutH_ACDH acetaldehy 27.3 74 0.0016 25.8 3.1 32 2-33 182-213 (488)
271 PRK07979 acetolactate synthase 27.2 2.6E+02 0.0056 23.0 6.3 28 6-33 66-99 (574)
272 PRK06456 acetolactate synthase 27.1 2.6E+02 0.0056 22.9 6.3 29 6-34 67-101 (572)
273 PRK03482 phosphoglycerate muta 27.1 57 0.0012 22.9 2.2 22 9-30 145-166 (215)
274 PRK07524 hypothetical protein; 26.7 3.5E+02 0.0075 22.0 7.1 28 6-33 63-96 (535)
275 PRK14046 malate--CoA ligase su 26.7 2.1E+02 0.0046 22.5 5.5 65 2-73 305-382 (392)
276 COG0133 TrpB Tryptophan syntha 26.6 2.7E+02 0.0059 21.8 5.8 43 63-106 26-68 (396)
277 TIGR01258 pgm_1 phosphoglycera 26.5 52 0.0011 24.0 2.0 22 8-29 175-196 (245)
278 COG0379 NadA Quinolinate synth 26.5 3E+02 0.0066 21.2 6.2 61 7-70 139-206 (324)
279 PRK06553 lipid A biosynthesis 26.2 2.4E+02 0.0052 21.1 5.6 41 11-51 116-157 (308)
280 PRK12772 bifunctional flagella 26.2 1.1E+02 0.0025 25.6 4.1 34 59-92 477-510 (609)
281 PF06345 Drf_DAD: DRF Autoregu 25.6 60 0.0013 12.8 1.4 12 17-28 3-14 (15)
282 PRK11475 DNA-binding transcrip 25.6 2.4E+02 0.0053 19.8 5.8 51 25-76 66-116 (207)
283 PRK06112 acetolactate synthase 25.6 91 0.002 25.6 3.4 29 6-34 73-107 (578)
284 PRK14072 6-phosphofructokinase 25.0 99 0.0021 24.6 3.4 31 5-35 101-140 (416)
285 PRK13710 plasmid maintenance p 24.9 1.6E+02 0.0034 17.3 4.5 37 65-105 24-60 (72)
286 TIGR00087 surE 5'/3'-nucleotid 24.8 95 0.0021 22.8 3.1 28 8-35 100-128 (244)
287 PRK08199 thiamine pyrophosphat 24.8 3.9E+02 0.0084 21.8 7.0 28 6-33 70-103 (557)
288 PF01372 Melittin: Melittin; 24.8 8.5 0.00018 17.8 -1.5 17 16-32 1-17 (26)
289 PF12682 Flavodoxin_4: Flavodo 24.4 1.4E+02 0.003 20.1 3.7 15 4-18 102-116 (156)
290 PRK07586 hypothetical protein; 24.3 3.8E+02 0.0082 21.6 6.8 28 7-34 64-97 (514)
291 COG0371 GldA Glycerol dehydrog 24.2 1.2E+02 0.0027 23.6 3.7 31 6-36 83-117 (360)
292 PRK13797 putative bifunctional 24.0 3.8E+02 0.0083 22.2 6.5 49 39-87 452-503 (516)
293 PRK10624 L-1,2-propanediol oxi 23.9 98 0.0021 24.0 3.2 30 6-36 86-140 (382)
294 PF04230 PS_pyruv_trans: Polys 23.8 1.3E+02 0.0029 20.9 3.7 29 7-35 63-107 (286)
295 cd08180 PDD 1,3-propanediol de 23.6 1.1E+02 0.0024 23.2 3.4 30 6-36 77-118 (332)
296 cd00363 PFK Phosphofructokinas 23.6 1.3E+02 0.0028 23.1 3.8 32 5-36 90-130 (338)
297 PRK14115 gpmA phosphoglyceromu 23.5 68 0.0015 23.4 2.1 22 8-29 175-196 (247)
298 cd08187 BDH Butanol dehydrogen 23.4 1.1E+02 0.0025 23.7 3.4 30 6-36 85-137 (382)
299 COG0496 SurE Predicted acid ph 23.3 1.7E+02 0.0037 21.7 4.1 22 15-36 105-126 (252)
300 PRK00770 deoxyhypusine synthas 23.1 3.8E+02 0.0083 21.2 6.2 50 2-56 75-125 (384)
301 TIGR01404 FlhB_rel_III type II 23.0 1.6E+02 0.0035 22.7 4.2 34 59-92 213-246 (342)
302 TIGR03180 UraD_2 OHCU decarbox 23.0 2.5E+02 0.0055 19.1 6.9 49 39-87 97-148 (158)
303 cd08171 GlyDH-like2 Glycerol d 22.8 1.3E+02 0.0028 23.0 3.6 30 6-36 77-111 (345)
304 cd04742 NPD_FabD 2-Nitropropan 22.7 4.1E+02 0.0088 21.3 6.4 56 16-72 2-60 (418)
305 PRK12361 hypothetical protein; 22.6 1.1E+02 0.0023 25.1 3.3 30 6-35 296-329 (547)
306 cd01147 HemV-2 Metal binding p 22.6 2.9E+02 0.0062 19.6 5.3 14 20-33 66-79 (262)
307 PF10346 Con-6: Conidiation pr 22.6 1.2E+02 0.0027 15.3 2.9 30 62-91 3-32 (36)
308 PRK12474 hypothetical protein; 22.5 3.8E+02 0.0083 21.7 6.4 28 7-34 68-101 (518)
309 PRK08327 acetolactate synthase 22.3 4.4E+02 0.0094 21.7 6.8 29 6-34 74-108 (569)
310 COG2099 CobK Precorrin-6x redu 22.3 1.2E+02 0.0026 22.6 3.1 28 6-33 195-228 (257)
311 PF11238 DUF3039: Protein of u 22.2 1.2E+02 0.0026 17.1 2.5 23 11-33 8-30 (58)
312 cd08193 HVD 5-hydroxyvalerate 22.0 1.3E+02 0.0027 23.3 3.5 30 6-36 82-134 (376)
313 cd00764 Eukaryotic_PFK Phospho 21.9 1.2E+02 0.0026 26.3 3.5 28 7-34 478-515 (762)
314 cd08191 HHD 6-hydroxyhexanoate 21.8 1.3E+02 0.0028 23.4 3.5 30 6-36 78-130 (386)
315 PRK09423 gldA glycerol dehydro 21.7 1.4E+02 0.0031 23.0 3.7 30 6-36 83-117 (366)
316 cd08176 LPO Lactadehyde:propan 21.6 1.3E+02 0.0029 23.2 3.5 30 6-36 84-136 (377)
317 PRK13840 sucrose phosphorylase 21.4 1.4E+02 0.0031 24.4 3.7 46 25-70 370-415 (495)
318 PRK13932 stationary phase surv 21.4 1.3E+02 0.0029 22.3 3.3 26 10-35 107-133 (257)
319 cd08188 Fe-ADH4 Iron-containin 21.3 1.3E+02 0.0029 23.3 3.5 30 6-36 84-136 (377)
320 PF03279 Lip_A_acyltrans: Bact 21.3 3.4E+02 0.0074 19.9 6.6 44 10-53 103-147 (295)
321 PRK14120 gpmA phosphoglyceromu 21.3 74 0.0016 23.3 1.9 21 9-29 178-198 (249)
322 PRK10852 thiosulfate transport 21.2 2.3E+02 0.0049 21.8 4.7 44 5-50 55-100 (338)
323 KOG4079|consensus 21.2 2.7E+02 0.0059 18.8 4.8 50 42-91 76-125 (169)
324 COG0406 phoE Broad specificity 21.2 87 0.0019 21.7 2.2 23 8-30 147-169 (208)
325 PF11071 DUF2872: Protein of u 21.1 1.4E+02 0.0031 19.9 3.0 24 18-41 62-85 (141)
326 PF02776 TPP_enzyme_N: Thiamin 21.0 1.4E+02 0.0031 20.0 3.3 28 7-34 64-97 (172)
327 PF03685 UPF0147: Uncharacteri 21.0 2.1E+02 0.0046 17.5 4.2 54 63-116 9-66 (85)
328 PRK07092 benzoylformate decarb 20.8 1.4E+02 0.0029 24.3 3.5 28 6-33 72-105 (530)
329 cd03789 GT1_LPS_heptosyltransf 20.7 1.4E+02 0.0031 21.6 3.4 26 7-33 198-223 (279)
330 PRK02492 deoxyhypusine synthas 20.4 4.2E+02 0.0092 20.7 7.4 50 2-56 81-132 (347)
331 cd01451 vWA_Magnesium_chelatas 20.3 2.8E+02 0.0061 18.6 5.8 46 25-70 130-177 (178)
332 cd08194 Fe-ADH6 Iron-containin 20.3 1.4E+02 0.0031 23.0 3.5 30 6-36 79-131 (375)
333 COG0380 OtsA Trehalose-6-phosp 20.3 4.9E+02 0.011 21.4 6.5 51 52-110 424-476 (486)
334 PRK13462 acid phosphatase; Pro 20.3 1E+02 0.0022 21.6 2.4 22 8-29 141-162 (203)
335 PTZ00468 phosphofructokinase f 20.3 1.5E+02 0.0031 27.5 3.7 32 5-36 798-843 (1328)
336 PF05014 Nuc_deoxyrib_tr: Nucl 20.2 1.6E+02 0.0034 18.3 3.1 21 15-35 74-97 (113)
337 PF12174 RST: RCD1-SRO-TAF4 (R 20.1 2E+02 0.0043 16.8 3.3 29 57-85 39-67 (70)
338 cd08170 GlyDH Glycerol dehydro 20.0 1.5E+02 0.0032 22.7 3.4 30 6-36 76-110 (351)
339 PF05524 PEP-utilisers_N: PEP- 20.0 1.7E+02 0.0037 18.5 3.3 27 63-89 67-93 (123)
No 1
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=5.6e-39 Score=252.75 Aligned_cols=134 Identities=40% Similarity=0.609 Sum_probs=82.4
Q ss_pred CCCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHH
Q psy1202 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRD 80 (136)
Q Consensus 1 ~~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~ 80 (136)
+||+||++++||||||.||+.||+++|||+|++|+++||..||+++++.|+|+.++.++++.+++.++|+++++|++|++
T Consensus 335 ~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~y~~ 414 (500)
T PF00201_consen 335 DLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENPSYKE 414 (500)
T ss_dssp HHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSHHHHH
T ss_pred hhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhhHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCCcccccCCChhhhhccCCC
Q psy1202 81 TVGRLSKQVRSLPYSNLDQAVRWAEHVAANKGVLGYTPAAQQTSVMRLLEGPRF 134 (136)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~~~~~~l~~~~~~~~~~~~~~~d~~ 134 (136)
+++++++.++++|.+|.+++++|||+++++++.+||++.+.++||||||++||+
T Consensus 415 ~a~~ls~~~~~~p~~p~~~~~~~ie~v~~~~~~~~l~~~~~~l~~~~~~~lDv~ 468 (500)
T PF00201_consen 415 NAKRLSSLFRDRPISPLERAVWWIEYVARHGGAPHLRSPARDLSFYQYYLLDVI 468 (500)
T ss_dssp HHHHHHHTTT--------------------------------------------
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCCcccCChhhcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999996
No 2
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=7.9e-37 Score=241.14 Aligned_cols=133 Identities=31% Similarity=0.464 Sum_probs=130.4
Q ss_pred CCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHH
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDT 81 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~ 81 (136)
||+||++++||||||.||+.||+++|||+|++|+++||+.||+++++.|+|+.++..+++.+++.++|+++++|++|+++
T Consensus 359 lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~~~ 438 (507)
T PHA03392 359 VLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENPKYRKN 438 (507)
T ss_pred HhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHcC-CCCCCcccccCCChhhhhccCCC
Q psy1202 82 VGRLSKQVRSLPYSNLDQAVRWAEHVAANK-GVLGYTPAAQQTSVMRLLEGPRF 134 (136)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ie~~~~~~-~~~~l~~~~~~~~~~~~~~~d~~ 134 (136)
++++++.++++|.+|.+++++|+|++++++ ++.||++.+.+++|||||++||+
T Consensus 439 a~~ls~~~~~~p~~~~~~av~~iE~v~r~~~g~~~lr~~~~~l~~~qy~~lDv~ 492 (507)
T PHA03392 439 LKELRHLIRHQPMTPLHKAIWYTEHVIRNKHGNTSLKTKAANVSYSDYFMSYIL 492 (507)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999985
No 3
>KOG1192|consensus
Probab=99.94 E-value=1.4e-26 Score=181.97 Aligned_cols=130 Identities=32% Similarity=0.530 Sum_probs=123.2
Q ss_pred CCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHH
Q psy1202 3 TGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTV 82 (136)
Q Consensus 3 L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~ 82 (136)
|.|+++++||||||+||++|++++|||++++|+++||..||+++++.|.+..+...+.+..++.+++..++++++|++++
T Consensus 350 l~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~~y~~~~ 429 (496)
T KOG1192|consen 350 LDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILENEEYKEAA 429 (496)
T ss_pred cCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcChHHHHHH
Confidence 78999999999999999999999999999999999999999999999888888776666666999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCCcccccCCChhhhhccCCC
Q psy1202 83 GRLSKQVRSLPYSNLDQAVRWAEHVAANKGVLGYTPAAQQTSVMRLLEGPRF 134 (136)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ie~~~~~~~~~~l~~~~~~~~~~~~~~~d~~ 134 (136)
+++++.++++|..+ +.+.+|+|...+.++..+++.. ..++|++|+.+|++
T Consensus 430 ~~l~~~~~~~p~~~-~~~~~~~e~~~~~~~~~~l~~~-~~~~~~~~~~~d~~ 479 (496)
T KOG1192|consen 430 KRLSEILRDQPISP-ELAVKWVEFVARHGGAKHLKEA-AHLSFIEYGSLDVI 479 (496)
T ss_pred HHHHHHHHcCCCCH-HHHHHHHHHHHhcCCCcccCcc-ccCChhhhhhhHHH
Confidence 99999999999999 9999999999999999999999 89999999999875
No 4
>PLN02670 transferase, transferring glycosyl groups
Probab=99.90 E-value=1.7e-23 Score=164.02 Aligned_cols=108 Identities=21% Similarity=0.329 Sum_probs=94.6
Q ss_pred CCCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCC----CCCHHHHHHHHHHHhcCh
Q psy1202 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHE----TITGDILYITIREVLNNP 76 (136)
Q Consensus 1 ~~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~----~~~~~~l~~~i~~ll~~~ 76 (136)
.||+|+++++||||||+||++|++++|||+|++|++.||..||+++++.|+|+.++.. .++.+++.++|++++.++
T Consensus 351 ~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~ 430 (472)
T PLN02670 351 KILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDD 430 (472)
T ss_pred HHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCc
Confidence 3799999999999999999999999999999999999999999999999999999642 378999999999999876
Q ss_pred ---HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc
Q psy1202 77 ---RYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAAN 110 (136)
Q Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~ 110 (136)
+||++++++++.+++++ ..+++++.++..+..
T Consensus 431 ~g~~~r~~a~~l~~~~~~~~--~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 431 AGEEIRDKAKEMRNLFGDMD--RNNRYVDELVHYLRE 465 (472)
T ss_pred chHHHHHHHHHHHHHHhCcc--hhHHHHHHHHHHHHH
Confidence 89999999999999985 344555555555443
No 5
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.89 E-value=9.7e-23 Score=160.49 Aligned_cols=108 Identities=23% Similarity=0.354 Sum_probs=92.2
Q ss_pred CCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHH-HHHHcCceeEcCC-----------CCCCHHHHHHHH
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCK-LMEEKGMGLITPH-----------ETITGDILYITI 69 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~-~~~~~G~g~~l~~-----------~~~~~~~l~~~i 69 (136)
||+||++++||||||+||++|++++|||+|++|+++||+.||+ ++++.|+|+.++. +.+++++|.++|
T Consensus 355 iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av 434 (481)
T PLN02554 355 VLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGI 434 (481)
T ss_pred HhCCcccCcccccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHH
Confidence 7999999999999999999999999999999999999999995 4678999999863 357899999999
Q ss_pred HHHhc-ChHHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHH
Q psy1202 70 REVLN-NPRYRDTVGRLSKQVRSL---PYSNLDQAVRWAEHVAA 109 (136)
Q Consensus 70 ~~ll~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ie~~~~ 109 (136)
++++. +++||++++++++.++.. ..++......+|+.+.+
T Consensus 435 ~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv~~~~~ 478 (481)
T PLN02554 435 RCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTALKKFIQDVTK 478 (481)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 99996 799999999999988853 33344556666666554
No 6
>PLN02208 glycosyltransferase family protein
Probab=99.89 E-value=2.2e-22 Score=156.86 Aligned_cols=106 Identities=20% Similarity=0.240 Sum_probs=92.5
Q ss_pred CCCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHH-cCceeEcCCCC---CCHHHHHHHHHHHhcCh
Q psy1202 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE-KGMGLITPHET---ITGDILYITIREVLNNP 76 (136)
Q Consensus 1 ~~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~-~G~g~~l~~~~---~~~~~l~~~i~~ll~~~ 76 (136)
.||+||++++||||||+||++|++++|||+|++|++.||+.||+++++ +|+|+.++.++ +++++|.++|+++++++
T Consensus 323 ~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~ 402 (442)
T PLN02208 323 LILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKD 402 (442)
T ss_pred HHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCC
Confidence 379999999999999999999999999999999999999999998876 89999997644 89999999999999765
Q ss_pred -----HHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy1202 77 -----RYRDTVGRLSKQVRSLPYSNLDQAVRWAEHV 107 (136)
Q Consensus 77 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~ 107 (136)
++|++++++++.+... .++...+..+|+.+
T Consensus 403 ~e~g~~~r~~~~~~~~~~~~~-gsS~~~l~~~v~~l 437 (442)
T PLN02208 403 SDLGKLVRSNHTKLKEILVSP-GLLTGYVDKFVEEL 437 (442)
T ss_pred chhHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHH
Confidence 4999999999988763 45556666666665
No 7
>PLN02562 UDP-glycosyltransferase
Probab=99.88 E-value=9.2e-22 Score=153.76 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=89.2
Q ss_pred CCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHH-cCceeEcCCCCCCHHHHHHHHHHHhcChHHHH
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE-KGMGLITPHETITGDILYITIREVLNNPRYRD 80 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~-~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~ 80 (136)
||+|+++++||||||+||++|++++|||+|++|+++||+.||+++++ .|+|+.+. +.+.+++.++|++++.+++||+
T Consensus 341 iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~--~~~~~~l~~~v~~~l~~~~~r~ 418 (448)
T PLN02562 341 VLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS--GFGQKEVEEGLRKVMEDSGMGE 418 (448)
T ss_pred HhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeC--CCCHHHHHHHHHHHhCCHHHHH
Confidence 79999999999999999999999999999999999999999999987 69998875 5789999999999999999999
Q ss_pred HHHHHHHHHhcCC--CChHHHHHHHHHH
Q psy1202 81 TVGRLSKQVRSLP--YSNLDQAVRWAEH 106 (136)
Q Consensus 81 ~~~~~~~~~~~~~--~~~~~~~~~~ie~ 106 (136)
+++++++...... .++......+|+.
T Consensus 419 ~a~~l~~~~~~~~~gGSS~~nl~~~v~~ 446 (448)
T PLN02562 419 RLMKLRERAMGEEARLRSMMNFTTLKDE 446 (448)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 9999998887642 2334444444443
No 8
>PLN02207 UDP-glycosyltransferase
Probab=99.87 E-value=1.2e-21 Score=153.43 Aligned_cols=109 Identities=24% Similarity=0.351 Sum_probs=91.4
Q ss_pred CCCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHH-cCceeEcC------C-CCCCHHHHHHHHHHH
Q psy1202 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE-KGMGLITP------H-ETITGDILYITIREV 72 (136)
Q Consensus 1 ~~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~-~G~g~~l~------~-~~~~~~~l~~~i~~l 72 (136)
.||+|+++++||||||+||++|++++|||+|++|+++||+.||+++++ +|+|+.+. . +..+.++|.++|+++
T Consensus 344 ~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~v 423 (468)
T PLN02207 344 EILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCV 423 (468)
T ss_pred HHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999999877 89998663 1 235889999999999
Q ss_pred hc--ChHHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHH
Q psy1202 73 LN--NPRYRDTVGRLSKQVRS---LPYSNLDQAVRWAEHVAA 109 (136)
Q Consensus 73 l~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ie~~~~ 109 (136)
+. +++||++++++++.++. ...++...+..+|+.+..
T Consensus 424 m~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 424 MNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIG 465 (468)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 97 68999999999998884 333444555666666543
No 9
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.87 E-value=2e-21 Score=151.89 Aligned_cols=105 Identities=20% Similarity=0.290 Sum_probs=90.0
Q ss_pred CCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHc-CceeEcCCCCCCHHHHHHHHHHHhcCh---H
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK-GMGLITPHETITGDILYITIREVLNNP---R 77 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~-G~g~~l~~~~~~~~~l~~~i~~ll~~~---~ 77 (136)
||+|+++++||||||+||++|++++|||+|++|++.||+.||+++++. |+|+.+. +.++++++.++|++++.++ +
T Consensus 337 iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~~~~~~v~~av~~lm~~~~~~~ 415 (451)
T PLN02410 337 VLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-GDLDRGAVERAVKRLMVEEEGEE 415 (451)
T ss_pred HhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-CcccHHHHHHHHHHHHcCCcHHH
Confidence 799999999999999999999999999999999999999999999875 9999997 5789999999999999775 7
Q ss_pred HHHHHHHHHHHHhc---CCCChHHHHHHHHHHH
Q psy1202 78 YRDTVGRLSKQVRS---LPYSNLDQAVRWAEHV 107 (136)
Q Consensus 78 ~~~~~~~~~~~~~~---~~~~~~~~~~~~ie~~ 107 (136)
+|++++++++.++. ...++...+..+|+++
T Consensus 416 ~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~ 448 (451)
T PLN02410 416 MRKRAISLKEQLRASVISGGSSHNSLEEFVHFM 448 (451)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999888875 2233444555555554
No 10
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.86 E-value=4.8e-21 Score=148.10 Aligned_cols=105 Identities=32% Similarity=0.515 Sum_probs=99.7
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRL 85 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 85 (136)
+++++||||||+||+.|+++.|+|++++|...||..||.++++.|+|..+..+..+.+.+.++|+++|++++|++++.++
T Consensus 299 ~~ad~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~~ 378 (406)
T COG1819 299 PRADAVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSYRRAAERL 378 (406)
T ss_pred hhcCEEEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHcCC
Q psy1202 86 SKQVRSLPYSNLDQAVRWAEHVAANKG 112 (136)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ie~~~~~~~ 112 (136)
++.+... .+.+.++++|+.+.+.+.
T Consensus 379 ~~~~~~~--~g~~~~a~~le~~~~~~~ 403 (406)
T COG1819 379 AEEFKEE--DGPAKAADLLEEFAREKK 403 (406)
T ss_pred HHHhhhc--ccHHHHHHHHHHHHhccc
Confidence 9999986 568889999999887654
No 11
>PLN02764 glycosyltransferase family protein
Probab=99.86 E-value=6.4e-21 Score=148.75 Aligned_cols=110 Identities=16% Similarity=0.217 Sum_probs=95.3
Q ss_pred CCCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHH-cCceeEcCCC---CCCHHHHHHHHHHHhcCh
Q psy1202 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE-KGMGLITPHE---TITGDILYITIREVLNNP 76 (136)
Q Consensus 1 ~~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~-~G~g~~l~~~---~~~~~~l~~~i~~ll~~~ 76 (136)
.||+|+++++||||||+||++|++..|||+|++|++.||+.||+++++ .|+|+.+..+ .++.+++.++++++++++
T Consensus 329 ~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~ 408 (453)
T PLN02764 329 LILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRD 408 (453)
T ss_pred HHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCC
Confidence 379999999999999999999999999999999999999999999965 8999887543 479999999999999774
Q ss_pred -----HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcC
Q psy1202 77 -----RYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAANK 111 (136)
Q Consensus 77 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~~ 111 (136)
++|++++++++.+.+. .++-.....+|+++.+..
T Consensus 409 ~~~g~~~r~~a~~~~~~~~~~-GSS~~~l~~lv~~~~~~~ 447 (453)
T PLN02764 409 SEIGNLVKKNHTKWRETLASP-GLLTGYVDNFIESLQDLV 447 (453)
T ss_pred chhHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhc
Confidence 3999999999999775 355667777788877653
No 12
>PLN00414 glycosyltransferase family protein
Probab=99.86 E-value=5.9e-21 Score=149.03 Aligned_cols=110 Identities=18% Similarity=0.244 Sum_probs=93.5
Q ss_pred CCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHH-HcCceeEcCCC---CCCHHHHHHHHHHHhcCh-
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLME-EKGMGLITPHE---TITGDILYITIREVLNNP- 76 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~-~~G~g~~l~~~---~~~~~~l~~~i~~ll~~~- 76 (136)
||+|+++++||||||+||++|++++|||+|++|++.||+.||++++ +.|+|+.+..+ .++++++.+++++++.++
T Consensus 325 vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~ 404 (446)
T PLN00414 325 ILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDS 404 (446)
T ss_pred HhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCCh
Confidence 7999999999999999999999999999999999999999999996 58999999643 379999999999999764
Q ss_pred ----HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCC
Q psy1202 77 ----RYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAANKG 112 (136)
Q Consensus 77 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~~~ 112 (136)
++|++++++++.+.+.. +.......+|+.+....+
T Consensus 405 e~g~~~r~~a~~~~~~~~~~g-g~ss~l~~~v~~~~~~~~ 443 (446)
T PLN00414 405 EIGNLVKRNHKKLKETLVSPG-LLSGYADKFVEALENEVN 443 (446)
T ss_pred hhHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhcc
Confidence 38999999999987753 324456777777755443
No 13
>PLN02210 UDP-glucosyl transferase
Probab=99.86 E-value=4.6e-21 Score=150.09 Aligned_cols=106 Identities=25% Similarity=0.360 Sum_probs=88.3
Q ss_pred CCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHH-cCceeEcCC----CCCCHHHHHHHHHHHhcCh
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE-KGMGLITPH----ETITGDILYITIREVLNNP 76 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~-~G~g~~l~~----~~~~~~~l~~~i~~ll~~~ 76 (136)
||+|+++++||||||+||++|++++|||+|++|++.||+.||+++++ .|+|+.+.. +.+++++|.+++++++.++
T Consensus 337 iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~ 416 (456)
T PLN02210 337 ILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGP 416 (456)
T ss_pred HhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCc
Confidence 79999999999999999999999999999999999999999999998 899999863 2579999999999999776
Q ss_pred ---HHHHHHHHHHHHHhcC---CCChHHHHHHHHHHH
Q psy1202 77 ---RYRDTVGRLSKQVRSL---PYSNLDQAVRWAEHV 107 (136)
Q Consensus 77 ---~~~~~~~~~~~~~~~~---~~~~~~~~~~~ie~~ 107 (136)
++|++++++++..+.. ..++......+|+.+
T Consensus 417 ~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~ 453 (456)
T PLN02210 417 AAADIRRRAAELKHVARLALAPGGSSARNLDLFISDI 453 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 4999999888766653 223333444444443
No 14
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.86 E-value=4.8e-21 Score=150.72 Aligned_cols=108 Identities=20% Similarity=0.359 Sum_probs=89.7
Q ss_pred CCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHH-HHHcCceeEcCC-------CCCCHHHHHHHHHHHh
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKL-MEEKGMGLITPH-------ETITGDILYITIREVL 73 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~-~~~~G~g~~l~~-------~~~~~~~l~~~i~~ll 73 (136)
||+|+++++||||||+||++|++++|||+|++|++.||+.||++ ++++|+|+.+.. +.++++++.++|++++
T Consensus 353 iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m 432 (475)
T PLN02167 353 ILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLM 432 (475)
T ss_pred HhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999986 677999998863 2468899999999999
Q ss_pred cCh-HHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHH
Q psy1202 74 NNP-RYRDTVGRLSKQVRSL---PYSNLDQAVRWAEHVAA 109 (136)
Q Consensus 74 ~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~ie~~~~ 109 (136)
.++ ++|++++++++..+.. ..++...+..+|+.+..
T Consensus 433 ~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 433 DGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLG 472 (475)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 765 8999999998877663 22344455556665543
No 15
>PLN03004 UDP-glycosyltransferase
Probab=99.85 E-value=3.8e-21 Score=150.16 Aligned_cols=91 Identities=20% Similarity=0.307 Sum_probs=83.8
Q ss_pred CCCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHH-cCceeEcCCC---CCCHHHHHHHHHHHhcCh
Q psy1202 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE-KGMGLITPHE---TITGDILYITIREVLNNP 76 (136)
Q Consensus 1 ~~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~-~G~g~~l~~~---~~~~~~l~~~i~~ll~~~ 76 (136)
.||+|+++++||||||+||++|++++|||+|++|++.||..||+++++ .|+|+.++.+ ..++++|.++++++++++
T Consensus 346 ~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~ 425 (451)
T PLN03004 346 PVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGEC 425 (451)
T ss_pred HHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCH
Confidence 379999999999999999999999999999999999999999999985 7999999743 468999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q psy1202 77 RYRDTVGRLSKQVRS 91 (136)
Q Consensus 77 ~~~~~~~~~~~~~~~ 91 (136)
+||++++++++..+.
T Consensus 426 ~~r~~a~~~~~~a~~ 440 (451)
T PLN03004 426 PVRERTMAMKNAAEL 440 (451)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999877654
No 16
>PLN02555 limonoid glucosyltransferase
Probab=99.85 E-value=1.7e-20 Score=147.46 Aligned_cols=109 Identities=20% Similarity=0.281 Sum_probs=92.6
Q ss_pred CCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHc-CceeEcC-----CCCCCHHHHHHHHHHHhcC
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK-GMGLITP-----HETITGDILYITIREVLNN 75 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~-G~g~~l~-----~~~~~~~~l~~~i~~ll~~ 75 (136)
||+||++++||||||+||++||+.+|||+|++|++.||+.|++++++. |+|+.+. .+.++++++.++|++++.+
T Consensus 350 iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~ 429 (480)
T PLN02555 350 VLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVG 429 (480)
T ss_pred HhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcC
Confidence 799999999999999999999999999999999999999999999885 9999994 3357899999999999965
Q ss_pred ---hHHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHc
Q psy1202 76 ---PRYRDTVGRLSKQVRSL---PYSNLDQAVRWAEHVAAN 110 (136)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ie~~~~~ 110 (136)
.++|++++++++..+.. ..++...+..+|+.+.+.
T Consensus 430 ~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 430 EKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 47999999998876543 234555667777777654
No 17
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.85 E-value=1.8e-20 Score=147.27 Aligned_cols=91 Identities=27% Similarity=0.442 Sum_probs=82.4
Q ss_pred CCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHH-HcCceeEcCC--CCCCHHHHHHHHHHHhcC---
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLME-EKGMGLITPH--ETITGDILYITIREVLNN--- 75 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~-~~G~g~~l~~--~~~~~~~l~~~i~~ll~~--- 75 (136)
||+|+++++||||||+||++|++++|||+|++|+++||+.||++++ +.|+|+.++. +.++.+++.++|++++.+
T Consensus 351 iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g 430 (481)
T PLN02992 351 ILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEEEG 430 (481)
T ss_pred HhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCCch
Confidence 7999999999999999999999999999999999999999999995 8999999976 348999999999999976
Q ss_pred hHHHHHHHHHHHHHhcC
Q psy1202 76 PRYRDTVGRLSKQVRSL 92 (136)
Q Consensus 76 ~~~~~~~~~~~~~~~~~ 92 (136)
.+++++++++++..+..
T Consensus 431 ~~~r~~a~~~~~~a~~A 447 (481)
T PLN02992 431 EEMRRKVKKLRDTAEMS 447 (481)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 37888888888776653
No 18
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.84 E-value=1.7e-20 Score=147.88 Aligned_cols=108 Identities=23% Similarity=0.331 Sum_probs=88.1
Q ss_pred CCCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHH---cCceeEc------CCCCCCHHHHHHHHHH
Q psy1202 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE---KGMGLIT------PHETITGDILYITIRE 71 (136)
Q Consensus 1 ~~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~---~G~g~~l------~~~~~~~~~l~~~i~~ 71 (136)
.||+|+++++||||||+||++|++++|||+|++|+++||+.||+++++ .|+++.. +.+.+++++|.+++++
T Consensus 357 ~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~ 436 (482)
T PLN03007 357 LILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVRE 436 (482)
T ss_pred HHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999998864 4555432 3345789999999999
Q ss_pred HhcCh---HHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHH
Q psy1202 72 VLNNP---RYRDTVGRLSKQVRSL---PYSNLDQAVRWAEHVA 108 (136)
Q Consensus 72 ll~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~ie~~~ 108 (136)
++.++ ++|++++++++..++. ..++......+|+.+.
T Consensus 437 ~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~v~~~~ 479 (482)
T PLN03007 437 VIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKFMEELN 479 (482)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99887 8999999998877764 2234445555555554
No 19
>PLN00164 glucosyltransferase; Provisional
Probab=99.84 E-value=1.6e-20 Score=147.90 Aligned_cols=109 Identities=21% Similarity=0.336 Sum_probs=89.0
Q ss_pred CCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHH-cCceeEcCCC-----CCCHHHHHHHHHHHhcC
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE-KGMGLITPHE-----TITGDILYITIREVLNN 75 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~-~G~g~~l~~~-----~~~~~~l~~~i~~ll~~ 75 (136)
||+|+++++||||||+||++|++.+|||+|++|+++||+.||+++.+ +|+|+.+..+ ..++++|.++|++++.+
T Consensus 352 iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~ 431 (480)
T PLN00164 352 ILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGG 431 (480)
T ss_pred HhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999998854 8999988532 36889999999999976
Q ss_pred h-----HHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHc
Q psy1202 76 P-----RYRDTVGRLSKQVRSL---PYSNLDQAVRWAEHVAAN 110 (136)
Q Consensus 76 ~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~ie~~~~~ 110 (136)
+ ++|++++++++..... ..++......+|+.+.+.
T Consensus 432 ~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~~~ 474 (480)
T PLN00164 432 GEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAREIRHG 474 (480)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 4 4788888888777663 223445555566666544
No 20
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.84 E-value=2.5e-20 Score=146.63 Aligned_cols=109 Identities=23% Similarity=0.277 Sum_probs=91.9
Q ss_pred CCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHH-cCceeEcCCC---CCCHHHHHHHHHHHh-cCh
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE-KGMGLITPHE---TITGDILYITIREVL-NNP 76 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~-~G~g~~l~~~---~~~~~~l~~~i~~ll-~~~ 76 (136)
+|.|+++++||||||+||++|++++|||+|++|++.||+.||+++++ +|+|+.+..+ ..+.+++.+++++++ +++
T Consensus 356 vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~ 435 (477)
T PLN02863 356 ILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQ 435 (477)
T ss_pred HhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccH
Confidence 78999999999999999999999999999999999999999999765 7999988532 357899999999988 679
Q ss_pred HHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHc
Q psy1202 77 RYRDTVGRLSKQVRSL---PYSNLDQAVRWAEHVAAN 110 (136)
Q Consensus 77 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~ie~~~~~ 110 (136)
++|++++++++..... ..++...+..+|+.+...
T Consensus 436 ~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 436 VERERAKELRRAALDAIKERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred HHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHh
Confidence 9999999999875543 234555666677776554
No 21
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.84 E-value=2.3e-20 Score=146.36 Aligned_cols=107 Identities=23% Similarity=0.306 Sum_probs=88.7
Q ss_pred CCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHH-cCceeEcCC-----CCCCHHHHHHHHHHHhcC
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE-KGMGLITPH-----ETITGDILYITIREVLNN 75 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~-~G~g~~l~~-----~~~~~~~l~~~i~~ll~~ 75 (136)
||.|+++++||||||+||++|++++|||+|++|++.||+.||+++++ +|+|+.+.. +..++++|.+++++++.+
T Consensus 336 iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~ 415 (459)
T PLN02448 336 VLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDL 415 (459)
T ss_pred HhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999988 688877752 246889999999999976
Q ss_pred h-----HHHHHHHHHHHHHhcC--C-CChHHHHHHHHHHHH
Q psy1202 76 P-----RYRDTVGRLSKQVRSL--P-YSNLDQAVRWAEHVA 108 (136)
Q Consensus 76 ~-----~~~~~~~~~~~~~~~~--~-~~~~~~~~~~ie~~~ 108 (136)
+ ++|++++++++..+.. + .++......+|+++.
T Consensus 416 ~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~ 456 (459)
T PLN02448 416 ESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDIS 456 (459)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 3 7999999998877764 2 234444555555544
No 22
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.84 E-value=3.3e-20 Score=144.81 Aligned_cols=106 Identities=23% Similarity=0.356 Sum_probs=86.9
Q ss_pred CCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHH-cCceeEcCCC----CCCHHHHHHHHHHHhcC-
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE-KGMGLITPHE----TITGDILYITIREVLNN- 75 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~-~G~g~~l~~~----~~~~~~l~~~i~~ll~~- 75 (136)
||+|+++++||||||+||++|++.+|||+|++|++.||+.||+++++ +|+|+.+..+ .++.+++.+++++++.+
T Consensus 330 iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~ 409 (449)
T PLN02173 330 VLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGE 409 (449)
T ss_pred HhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCC
Confidence 79999999999999999999999999999999999999999999987 4888887532 25889999999999976
Q ss_pred --hHHHHHHHHHHHHHhc---CCCChHHHHHHHHHHH
Q psy1202 76 --PRYRDTVGRLSKQVRS---LPYSNLDQAVRWAEHV 107 (136)
Q Consensus 76 --~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ie~~ 107 (136)
.++|++++++++..+. ...++...+..+|+.+
T Consensus 410 ~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~ 446 (449)
T PLN02173 410 KSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKI 446 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 4688888888877773 2233344455555543
No 23
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.83 E-value=4e-20 Score=144.55 Aligned_cols=105 Identities=27% Similarity=0.363 Sum_probs=83.8
Q ss_pred CCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHH-cCceeEcC--CC-CCCHHHHHHHHHHHhcCh-
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE-KGMGLITP--HE-TITGDILYITIREVLNNP- 76 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~-~G~g~~l~--~~-~~~~~~l~~~i~~ll~~~- 76 (136)
||+|+++++||||||+||++|++++|||++++|++.||+.||+++++ +|+|+.+. .+ ..+.++|.++++++++++
T Consensus 340 iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~ 419 (455)
T PLN02152 340 VLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKS 419 (455)
T ss_pred HhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhH
Confidence 79999999999999999999999999999999999999999999988 45555553 33 358999999999999765
Q ss_pred -HHHHHHHHHHHHHhcC---CCChHHHHHHHHHH
Q psy1202 77 -RYRDTVGRLSKQVRSL---PYSNLDQAVRWAEH 106 (136)
Q Consensus 77 -~~~~~~~~~~~~~~~~---~~~~~~~~~~~ie~ 106 (136)
++|+++.++++..+.. ..++...+..+|+.
T Consensus 420 ~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~ 453 (455)
T PLN02152 420 VELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKT 453 (455)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 4899997777666553 33334444444443
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.82 E-value=1.7e-19 Score=138.45 Aligned_cols=102 Identities=32% Similarity=0.572 Sum_probs=95.5
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRL 85 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 85 (136)
+.++++|||||.+|+.|++.+|+|+|++|...||..|++++++.|+|+.+...+++.+++.++|+++++|++++++++++
T Consensus 290 ~~~~~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~l 369 (392)
T TIGR01426 290 KKADAFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAERLRKM 369 (392)
T ss_pred hhCCEEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHH
Q psy1202 86 SKQVRSLPYSNLDQAVRWAEHVAA 109 (136)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ie~~~~ 109 (136)
++.+... ++.+.++++|+.+++
T Consensus 370 ~~~~~~~--~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 370 RAEIREA--GGARRAADEIEGFLA 391 (392)
T ss_pred HHHHHHc--CCHHHHHHHHHHhhc
Confidence 9999875 678899999988754
No 25
>PLN03015 UDP-glucosyl transferase
Probab=99.81 E-value=3.3e-19 Score=139.65 Aligned_cols=91 Identities=24% Similarity=0.409 Sum_probs=81.4
Q ss_pred CCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHH-HHcCceeEcC----CCCCCHHHHHHHHHHHhc--
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM-EEKGMGLITP----HETITGDILYITIREVLN-- 74 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~-~~~G~g~~l~----~~~~~~~~l~~~i~~ll~-- 74 (136)
||+|+++++||||||+||++|++++|||++++|++.||..||+++ +.+|+|+.+. .+.++++++.++|++++.
T Consensus 348 vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~ 427 (470)
T PLN03015 348 ILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEE 427 (470)
T ss_pred HhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccC
Confidence 799999999999999999999999999999999999999999999 5689999985 235789999999999994
Q ss_pred ---ChHHHHHHHHHHHHHhcC
Q psy1202 75 ---NPRYRDTVGRLSKQVRSL 92 (136)
Q Consensus 75 ---~~~~~~~~~~~~~~~~~~ 92 (136)
..++|++++++++..+..
T Consensus 428 ~eeg~~~R~ra~~lk~~a~~A 448 (470)
T PLN03015 428 DEEGQKIRAKAEEVRVSSERA 448 (470)
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 258899999988877663
No 26
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.80 E-value=5.4e-19 Score=135.75 Aligned_cols=98 Identities=26% Similarity=0.412 Sum_probs=87.5
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRL 85 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 85 (136)
+.+++||||||+||+.|++.+|+|+|++|+..||..||+++++.|+|+.++..+++.+++.++++++++++ +++++.+.
T Consensus 303 ~~~d~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~-~~~~~~~~ 381 (401)
T cd03784 303 PRCAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPP-SRRRAAAL 381 (401)
T ss_pred hhhheeeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHH-HHHHHHHH
Confidence 45999999999999999999999999999999999999999999999999987889999999999999854 56677777
Q ss_pred HHHHhcCCCChHHHHHHHHHH
Q psy1202 86 SKQVRSLPYSNLDQAVRWAEH 106 (136)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ie~ 106 (136)
++.+... ++.+.+++.||.
T Consensus 382 ~~~~~~~--~g~~~~~~~ie~ 400 (401)
T cd03784 382 LRRIREE--DGVPSAADVIER 400 (401)
T ss_pred HHHHHhc--cCHHHHHHHHhh
Confidence 7777654 688899988875
No 27
>PLN02534 UDP-glycosyltransferase
Probab=99.80 E-value=1.2e-18 Score=137.38 Aligned_cols=109 Identities=23% Similarity=0.290 Sum_probs=90.6
Q ss_pred CCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHH-cCceeEcCC------------C-CCCHHHHHH
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE-KGMGLITPH------------E-TITGDILYI 67 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~-~G~g~~l~~------------~-~~~~~~l~~ 67 (136)
||.|+++++||||||+||++||+++|+|+|++|++.||+.|++++++ +|+|+.+.. + ..+++++.+
T Consensus 357 iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~ 436 (491)
T PLN02534 357 ILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEK 436 (491)
T ss_pred HhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHH
Confidence 79999999999999999999999999999999999999999999975 798887631 1 268999999
Q ss_pred HHHHHhc-----ChHHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHc
Q psy1202 68 TIREVLN-----NPRYRDTVGRLSKQVRSL---PYSNLDQAVRWAEHVAAN 110 (136)
Q Consensus 68 ~i~~ll~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ie~~~~~ 110 (136)
++++++. ..++|++++++++..+.. ..++...+..+|+.+.+.
T Consensus 437 ~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 437 AVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQDVLKQ 487 (491)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 9999995 258999999988777663 334556667777777654
No 28
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=1.4e-14 Score=110.46 Aligned_cols=102 Identities=22% Similarity=0.307 Sum_probs=90.3
Q ss_pred CCCccEEEeCCChhHHHHHHHhCCCEEeecCC----cChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHH
Q psy1202 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGF----SDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRD 80 (136)
Q Consensus 5 h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~----~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~ 80 (136)
...+|++||++|++|+.|.++.|+|.|++|+. ++|..||+.+++.|+|..++..+++.+++.+.|.+++.+++-.+
T Consensus 250 ~~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~ 329 (357)
T COG0707 250 LAAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLK 329 (357)
T ss_pred HHhccEEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHH
Confidence 45789999999999999999999999999874 48999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy1202 81 TVGRLSKQVRSLPYSNLDQAVRWAEHVA 108 (136)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ie~~~ 108 (136)
++.+.++.+... ++.+++++.++...
T Consensus 330 ~m~~~a~~~~~p--~aa~~i~~~~~~~~ 355 (357)
T COG0707 330 AMAENAKKLGKP--DAAERIADLLLALA 355 (357)
T ss_pred HHHHHHHhcCCC--CHHHHHHHHHHHHh
Confidence 888878777664 67778888777654
No 29
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.55 E-value=3.7e-15 Score=102.25 Aligned_cols=79 Identities=24% Similarity=0.412 Sum_probs=64.5
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecCCc----ChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFS----DQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDT 81 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~----dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~ 81 (136)
..+|++|||||.+|+.|++..|+|+|++|... +|..|+..+++.|++..+.....+.++|.+.|.+++.++.....
T Consensus 71 ~~aDlvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~~~~ 150 (167)
T PF04101_consen 71 AAADLVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLSDPEKLKE 150 (167)
T ss_dssp HHHSEEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-SHH
T ss_pred HHcCEEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcHHHHH
Confidence 35799999999999999999999999999988 99999999999999999998777788999999999998876444
Q ss_pred HHH
Q psy1202 82 VGR 84 (136)
Q Consensus 82 ~~~ 84 (136)
+.+
T Consensus 151 ~~~ 153 (167)
T PF04101_consen 151 MAK 153 (167)
T ss_dssp HCC
T ss_pred HHH
Confidence 443
No 30
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.55 E-value=7.5e-14 Score=106.43 Aligned_cols=95 Identities=18% Similarity=0.234 Sum_probs=78.3
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecCC-----cChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGF-----SDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRD 80 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~-----~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~ 80 (136)
..+|++|||||.+|+.|+++.|+|+|++|+. ++|..||+++++.|++..+..++.+++.+.+.+.++++|++..+
T Consensus 251 ~~adlvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~ 330 (352)
T PRK12446 251 AITDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYK 330 (352)
T ss_pred HhCCEEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHH
Confidence 5689999999999999999999999999985 48999999999999999999888999999999999998874432
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHH
Q psy1202 81 TVGRLSKQVRSLPYSNLDQAVRWAE 105 (136)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ie 105 (136)
+ ..+.+.. + ++.+.++++|+
T Consensus 331 ~---~~~~~~~-~-~aa~~i~~~i~ 350 (352)
T PRK12446 331 T---ALKKYNG-K-EAIQTIIDHIS 350 (352)
T ss_pred H---HHHHcCC-C-CHHHHHHHHHH
Confidence 2 2222222 2 67777777765
No 31
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.52 E-value=3.1e-13 Score=102.47 Aligned_cols=102 Identities=19% Similarity=0.345 Sum_probs=90.7
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecC----CcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPG----FSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDT 81 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~----~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~ 81 (136)
+.+|++|+++|.++++|++++|+|+|++|. .++|..|+..+.+.|.|..++.++++++.+.++++++++|++++++
T Consensus 251 ~~~d~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 330 (357)
T PRK00726 251 AAADLVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEA 330 (357)
T ss_pred HhCCEEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHH
Confidence 478999999999999999999999999986 3689999999999999999987777799999999999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy1202 82 VGRLSKQVRSLPYSNLDQAVRWAEHVAA 109 (136)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ie~~~~ 109 (136)
+.+.++..... .+.+++++.+..+++
T Consensus 331 ~~~~~~~~~~~--~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 331 MAEAARALGKP--DAAERLADLIEELAR 356 (357)
T ss_pred HHHHHHhcCCc--CHHHHHHHHHHHHhh
Confidence 99988887654 678888888877764
No 32
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.43 E-value=3.6e-13 Score=100.58 Aligned_cols=67 Identities=27% Similarity=0.481 Sum_probs=63.2
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecC--CcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPG--FSDQHQNCKLMEEKGMGLITPHETITGDILYITIREV 72 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~--~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~l 72 (136)
..+|++|++||++|++|+++.|+|+|++|. ..||..||+.+++.|+|..++.++++++.|.++|+++
T Consensus 249 ~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 249 AAADLVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred HhCCEEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 468999999999999999999999999999 6799999999999999999998899999999999875
No 33
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.39 E-value=8e-13 Score=99.39 Aligned_cols=70 Identities=31% Similarity=0.543 Sum_probs=61.1
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecCCc--ChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFS--DQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRY 78 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~--dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~ 78 (136)
+.++++|||||++|+.|++++|+|++.+|..+ ||..||+.+++.|+|+.++..+. ++.+++.++++|+.|
T Consensus 246 ~~ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~---~~~~~~~~~~~~~~~ 317 (321)
T TIGR00661 246 KNAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL---RLLEAILDIRNMKRY 317 (321)
T ss_pred HhCCEEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH---HHHHHHHhccccccc
Confidence 68999999999999999999999999999965 89999999999999999986544 666677777777655
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.31 E-value=2.7e-11 Score=91.12 Aligned_cols=96 Identities=20% Similarity=0.362 Sum_probs=81.9
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecCC---cChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGF---SDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTV 82 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~---~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~ 82 (136)
..+|++|+++|.++++|++++|+|+|..|.. ++|..|+..+.+.|.|..++.++.+++.+.++++++++|++.++++
T Consensus 249 ~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 328 (348)
T TIGR01133 249 AAADLVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAM 328 (348)
T ss_pred HhCCEEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHH
Confidence 5689999999988999999999999999864 4678899999999999998876667999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHH
Q psy1202 83 GRLSKQVRSLPYSNLDQAVRW 103 (136)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ 103 (136)
.+.++.+... ...+++++.
T Consensus 329 ~~~~~~~~~~--~~~~~i~~~ 347 (348)
T TIGR01133 329 AEAARKLAKP--DAAKRIAEL 347 (348)
T ss_pred HHHHHhcCCc--cHHHHHHhh
Confidence 9888776654 566666553
No 35
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.31 E-value=4e-11 Score=92.52 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=84.9
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEee-cCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMM-PGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGR 84 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~-P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 84 (136)
..+|++|+.+|..|+.||+++|+|+|+. |..+++..|+..+.+.|+|+... +.+++.++|.++++|++.++++++
T Consensus 272 ~~aDl~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~----~~~~l~~~i~~ll~~~~~~~~m~~ 347 (391)
T PRK13608 272 ASSQLMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIAD----TPEEAIKIVASLTNGNEQLTNMIS 347 (391)
T ss_pred HhhhEEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEeC----CHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4689999999989999999999999998 77777789999999999998876 789999999999999998888888
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHc
Q psy1202 85 LSKQVRSLPYSNLDQAVRWAEHVAAN 110 (136)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ie~~~~~ 110 (136)
.+...... .+.+.+++.++..+..
T Consensus 348 ~~~~~~~~--~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 348 TMEQDKIK--YATQTICRDLLDLIGH 371 (391)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHhhh
Confidence 88877553 4667777777776654
No 36
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.27 E-value=6e-11 Score=89.36 Aligned_cols=95 Identities=18% Similarity=0.356 Sum_probs=81.6
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecC----CcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPG----FSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDT 81 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~----~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~ 81 (136)
..+|++++++|.+|++||+++|+|+|++|. .++|..|+..+.+.|.|..++.++.+.+++.+++++++.+++.+++
T Consensus 251 ~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~ 330 (350)
T cd03785 251 AAADLVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKA 330 (350)
T ss_pred HhcCEEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHH
Confidence 478999999999999999999999999986 3578899999999999999986656889999999999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHH
Q psy1202 82 VGRLSKQVRSLPYSNLDQAVR 102 (136)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~ 102 (136)
+.+.++..... .+.+++++
T Consensus 331 ~~~~~~~~~~~--~~~~~i~~ 349 (350)
T cd03785 331 MAEAARSLARP--DAAERIAD 349 (350)
T ss_pred HHHHHHhcCCC--CHHHHHHh
Confidence 88888776553 56666654
No 37
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.24 E-value=1.6e-10 Score=88.84 Aligned_cols=98 Identities=14% Similarity=0.231 Sum_probs=81.9
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecCCcCh-HHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcC-hHHHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQ-HQNCKLMEEKGMGLITPHETITGDILYITIREVLNN-PRYRDTVG 83 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq-~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~-~~~~~~~~ 83 (136)
..+|++|+.+|.+|+.||+++|+|+|+.+....| ..|+..+.+.|.|+.+. +++++.+++.+++.+ ++.++++.
T Consensus 281 ~aaDv~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~~~~----~~~~la~~i~~ll~~~~~~~~~m~ 356 (382)
T PLN02605 281 GACDCIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGAFSE----SPKEIARIVAEWFGDKSDELEAMS 356 (382)
T ss_pred HhCCEEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCceeecC----CHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5689999999999999999999999999655455 57999999999998774 789999999999988 88888888
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHH
Q psy1202 84 RLSKQVRSLPYSNLDQAVRWAEHVAA 109 (136)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ie~~~~ 109 (136)
+.++..... ++.+.++..+.....
T Consensus 357 ~~~~~~~~~--~a~~~i~~~l~~~~~ 380 (382)
T PLN02605 357 ENALKLARP--EAVFDIVHDLHELVR 380 (382)
T ss_pred HHHHHhcCC--chHHHHHHHHHHHhh
Confidence 888777654 566777777766543
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.18 E-value=5.7e-10 Score=85.38 Aligned_cols=99 Identities=19% Similarity=0.185 Sum_probs=83.1
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEee-cCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMM-PGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGR 84 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~-P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 84 (136)
..+|++|+.+|..|+.||+++|+|+|+. |..+.+..|+..+.+.|+++... +.+++.+++.++++|++.++++.+
T Consensus 272 ~~aD~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~~----~~~~l~~~i~~ll~~~~~~~~m~~ 347 (380)
T PRK13609 272 RVTSCMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAVVIR----DDEEVFAKTEALLQDDMKLLQMKE 347 (380)
T ss_pred HhccEEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEEEEC----CHHHHHHHHHHHHCCHHHHHHHHH
Confidence 4578999999989999999999999995 77777889999999999998765 689999999999999998888888
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHc
Q psy1202 85 LSKQVRSLPYSNLDQAVRWAEHVAAN 110 (136)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ie~~~~~ 110 (136)
.+..+... .+.+++++.++..+..
T Consensus 348 ~~~~~~~~--~s~~~i~~~i~~~~~~ 371 (380)
T PRK13609 348 AMKSLYLP--EPADHIVDDILAENHV 371 (380)
T ss_pred HHHHhCCC--chHHHHHHHHHHhhhh
Confidence 77776654 4777888887766543
No 39
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.03 E-value=1.6e-09 Score=83.28 Aligned_cols=90 Identities=19% Similarity=0.297 Sum_probs=80.0
Q ss_pred EEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHHHHHHh
Q psy1202 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRLSKQVR 90 (136)
Q Consensus 11 ~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 90 (136)
++.+||+| .+|++++|+|+|..|+..+|.+.++++.+.|+++.++ +.+.+.+++..+++|++.++++.+.+..+.
T Consensus 327 lv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~----~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v 401 (419)
T COG1519 327 LVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVE----DADLLAKAVELLLADEDKREAYGRAGLEFL 401 (419)
T ss_pred ccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEEC----CHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 66799999 9999999999999999999999999999999999999 678899999999999999999998888888
Q ss_pred cCCCChHHHHHHHHH
Q psy1202 91 SLPYSNLDQAVRWAE 105 (136)
Q Consensus 91 ~~~~~~~~~~~~~ie 105 (136)
....+..++....++
T Consensus 402 ~~~~gal~r~l~~l~ 416 (419)
T COG1519 402 AQNRGALARTLEALK 416 (419)
T ss_pred HHhhHHHHHHHHHhh
Confidence 876666666665554
No 40
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.01 E-value=7e-09 Score=80.40 Aligned_cols=96 Identities=19% Similarity=0.248 Sum_probs=75.6
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHc----CceeEcCCCCCCHHHHHHHHHHHhcChHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK----GMGLITPHETITGDILYITIREVLNNPRYRDT 81 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~----G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~ 81 (136)
..+|++|+.+|..| .|++..|+|+|++|..++|. |+..+++. |.++.+.. .+.+.+.+.+.++++|++.+++
T Consensus 295 ~~ADlvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~~--~~~~~l~~~l~~ll~d~~~~~~ 370 (396)
T TIGR03492 295 HWADLGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLAS--KNPEQAAQVVRQLLADPELLER 370 (396)
T ss_pred HhCCEEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecCC--CCHHHHHHHHHHHHcCHHHHHH
Confidence 46899999999877 99999999999999888887 98887774 77777763 3568999999999999988877
Q ss_pred HHH-HHHHHhcCCCChHHHHHHHHHHH
Q psy1202 82 VGR-LSKQVRSLPYSNLDQAVRWAEHV 107 (136)
Q Consensus 82 ~~~-~~~~~~~~~~~~~~~~~~~ie~~ 107 (136)
+.+ ..+.+.+ + ++.+++++.|...
T Consensus 371 ~~~~~~~~lg~-~-~a~~~ia~~i~~~ 395 (396)
T TIGR03492 371 CRRNGQERMGP-P-GASARIAESILKQ 395 (396)
T ss_pred HHHHHHHhcCC-C-CHHHHHHHHHHHh
Confidence 763 3344433 2 6778888877653
No 41
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.89 E-value=4.7e-09 Score=79.08 Aligned_cols=96 Identities=19% Similarity=0.306 Sum_probs=78.2
Q ss_pred CccEEEeCCChhHHHHHHHhCCCEEeecCC---cChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHH
Q psy1202 7 NCKLFITHGGIHSSMEAVYHGVPVVMMPGF---SDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVG 83 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~---~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 83 (136)
.++.+|+-||+||++|-++.|||.+++|+. .+|...|.++++.|+.-++.++++++..++++|...++-|+....--
T Consensus 294 gA~~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P~~~~~~L 373 (400)
T COG4671 294 GARLVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARPSPSKPHL 373 (400)
T ss_pred hhheeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCCCCCcccc
Confidence 578899999999999999999999999985 38889999999999999999999999999999999997554322211
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHcC
Q psy1202 84 RLSKQVRSLPYSNLDQAVRWAEHVAANK 111 (136)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ie~~~~~~ 111 (136)
+ .++++.+...+..++...
T Consensus 374 -------~--L~G~~~~a~~l~e~L~~~ 392 (400)
T COG4671 374 -------D--LEGLEHIARILAELLSTR 392 (400)
T ss_pred -------C--chhhHhHHHHHHHHhhhh
Confidence 1 256677777776666554
No 42
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.89 E-value=2.2e-08 Score=76.49 Aligned_cols=104 Identities=13% Similarity=0.045 Sum_probs=73.3
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecCCcChH-HHH------------HHHHHcCceeEcCCCCCCHHHHHHHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQH-QNC------------KLMEEKGMGLITPHETITGDILYITIREV 72 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~-~na------------~~~~~~G~g~~l~~~~~~~~~l~~~i~~l 72 (136)
..+|++|+.+|.+++ |++++|+|+|.+|..+... ..+ ..+.+.+++..+.....+++++.+.+.++
T Consensus 260 ~~aDl~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 338 (380)
T PRK00025 260 AAADAALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPL 338 (380)
T ss_pred HhCCEEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHH
Confidence 568999999998866 9999999999996543222 222 22333333444444566889999999999
Q ss_pred hcChHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHc
Q psy1202 73 LNNPRYRDTVGRLSKQVRSL-PYSNLDQAVRWAEHVAAN 110 (136)
Q Consensus 73 l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ie~~~~~ 110 (136)
++|++.++++.+..+..... ..++.+++++.|..++..
T Consensus 339 l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~ 377 (380)
T PRK00025 339 LADGARRQALLEGFTELHQQLRCGADERAAQAVLELLKQ 377 (380)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Confidence 99998888777765333322 236888999998877644
No 43
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.87 E-value=4.8e-08 Score=75.92 Aligned_cols=100 Identities=17% Similarity=0.250 Sum_probs=80.0
Q ss_pred CCccE-EEe----CCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHH
Q psy1202 6 RNCKL-FIT----HGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRD 80 (136)
Q Consensus 6 ~~~~~-~I~----hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~ 80 (136)
..+|+ |+. -+|..+++||+++|+|+|..|..+++.+....+.+.|+++... +.+++.+++.++++|++.++
T Consensus 318 ~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~----d~~~La~~l~~ll~~~~~~~ 393 (425)
T PRK05749 318 AIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVE----DAEDLAKAVTYLLTDPDARQ 393 (425)
T ss_pred HhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEEC----CHHHHHHHHHHHhcCHHHHH
Confidence 35676 442 1344459999999999999999999988888887788877765 78999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy1202 81 TVGRLSKQVRSLPYSNLDQAVRWAEHVAA 109 (136)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ie~~~~ 109 (136)
++.+.++.......+..++..+.++..++
T Consensus 394 ~m~~~a~~~~~~~~~~~~~~~~~l~~~l~ 422 (425)
T PRK05749 394 AYGEAGVAFLKQNQGALQRTLQLLEPYLP 422 (425)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHhcc
Confidence 99988888776556777888888776553
No 44
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.78 E-value=2e-08 Score=77.52 Aligned_cols=99 Identities=15% Similarity=0.072 Sum_probs=78.1
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEee----cCCc---------ChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMM----PGFS---------DQHQNCKLMEEKGMGLITPHETITGDILYITIREV 72 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~----P~~~---------dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~l 72 (136)
..+|++|+.+|..|+ |++.+|+|+|++ |+.. .|..|+..+.+.++...+-.++.+++.+.+.+.++
T Consensus 266 ~aADl~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~l 344 (385)
T TIGR00215 266 FAADAALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLL 344 (385)
T ss_pred HhCCEEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHH
Confidence 568999999999877 999999999999 7642 37789999999999999888899999999999999
Q ss_pred hcCh----HHHHHHHHHHHHHhcCC--CChHHHHHHHHH
Q psy1202 73 LNNP----RYRDTVGRLSKQVRSLP--YSNLDQAVRWAE 105 (136)
Q Consensus 73 l~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~ie 105 (136)
++|+ ++++++.+--..++.+- .++.+++++.|.
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 345 LENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVL 383 (385)
T ss_pred hcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 9998 66665555444443321 246677777654
No 45
>KOG3349|consensus
Probab=98.46 E-value=2.7e-07 Score=61.97 Aligned_cols=52 Identities=25% Similarity=0.383 Sum_probs=46.1
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecC----CcChHHHHHHHHHcCceeEcCC
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPG----FSDQHQNCKLMEEKGMGLITPH 57 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~----~~dq~~na~~~~~~G~g~~l~~ 57 (136)
..++++|+|+|+||++|.+..|+|.|+++- .++|.+.|..+++.|--+.-..
T Consensus 79 ~~AdlVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~p 134 (170)
T KOG3349|consen 79 RSADLVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCTP 134 (170)
T ss_pred hhccEEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEeec
Confidence 358999999999999999999999999984 3689999999999998877764
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.33 E-value=9.6e-06 Score=60.28 Aligned_cols=93 Identities=13% Similarity=0.200 Sum_probs=68.6
Q ss_pred CccEEEeCCC----hhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHH
Q psy1202 7 NCKLFITHGG----IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTV 82 (136)
Q Consensus 7 ~~~~~I~hgG----~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~ 82 (136)
.+|+++..+. .++++||+++|+|+|+.+..+ +...+.+.+.|..++.. +.+++.+.+.++++|++.++++
T Consensus 266 ~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~~~g~~~~~~--~~~~l~~~i~~l~~~~~~~~~~ 339 (364)
T cd03814 266 SADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDGENGLLVEPG--DAEAFAAALAALLADPELRRRM 339 (364)
T ss_pred hCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCCcceEEcCCC--CHHHHHHHHHHHHcCHHHHHHH
Confidence 5677775543 478999999999999987654 34455666888888743 5678999999999999999888
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHH
Q psy1202 83 GRLSKQVRSLPYSNLDQAVRWAEHV 107 (136)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ie~~ 107 (136)
.+.+...... -..+...+.+..+
T Consensus 340 ~~~~~~~~~~--~~~~~~~~~~~~~ 362 (364)
T cd03814 340 AARARAEAER--RSWEAFLDNLLEA 362 (364)
T ss_pred HHHHHHHHhh--cCHHHHHHHHHHh
Confidence 8888777643 2455555555443
No 47
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.30 E-value=4.7e-06 Score=63.52 Aligned_cols=91 Identities=16% Similarity=0.198 Sum_probs=66.3
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRL 85 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 85 (136)
..++++++.+|.. +.||+++|+|+|.++..+++.+ +.+.|.+..+.. +++++.+++.+++++++.++++.+.
T Consensus 273 ~~ad~vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~g~~~lv~~---d~~~i~~ai~~ll~~~~~~~~~~~~ 344 (365)
T TIGR00236 273 ANSHLILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEAGTNKLVGT---DKENITKAAKRLLTDPDEYKKMSNA 344 (365)
T ss_pred HhCCEEEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhcCceEEeCC---CHHHHHHHHHHHHhChHHHHHhhhc
Confidence 4678889887754 7999999999999976555443 233577766642 7899999999999999888887765
Q ss_pred HHHHhcCCCChHHHHHHHHHH
Q psy1202 86 SKQVRSLPYSNLDQAVRWAEH 106 (136)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ie~ 106 (136)
...+.+ .++.+++++.++.
T Consensus 345 ~~~~g~--~~a~~ri~~~l~~ 363 (365)
T TIGR00236 345 SNPYGD--GEASERIVEELLN 363 (365)
T ss_pred CCCCcC--chHHHHHHHHHHh
Confidence 543433 2566777766653
No 48
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.12 E-value=6.8e-06 Score=62.85 Aligned_cols=96 Identities=15% Similarity=0.202 Sum_probs=71.3
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEee-cCCcChHHHHHHHH---HcCceeEc-------------CCCCCCHHHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMM-PGFSDQHQNCKLME---EKGMGLIT-------------PHETITGDILYIT 68 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~-P~~~dq~~na~~~~---~~G~g~~l-------------~~~~~~~~~l~~~ 68 (136)
..+|+.|+.+|..|+ |++..|+|+|+. ..-.-|+.|++++. ..|++-++ -.++.+++.+.+.
T Consensus 234 ~~aDlal~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~ 312 (347)
T PRK14089 234 LEAEFAFICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKA 312 (347)
T ss_pred HhhhHHHhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHH
Confidence 357889999999988 999999999994 22346889999998 45666444 2456888999999
Q ss_pred HHHHhcChHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy1202 69 IREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEH 106 (136)
Q Consensus 69 i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~ 106 (136)
+.+ .....+++...++.+.+.. ++.+++++.|..
T Consensus 313 i~~-~~~~~~~~~~~~l~~~l~~---~a~~~~A~~i~~ 346 (347)
T PRK14089 313 YKE-MDREKFFKKSKELREYLKH---GSAKNVAKILKE 346 (347)
T ss_pred HHH-HHHHHHHHHHHHHHHHhcC---CHHHHHHHHHhc
Confidence 988 3345666777776666632 677788877653
No 49
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.10 E-value=2.4e-05 Score=53.09 Aligned_cols=75 Identities=23% Similarity=0.366 Sum_probs=57.2
Q ss_pred ccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHH
Q psy1202 8 CKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVG 83 (136)
Q Consensus 8 ~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 83 (136)
++++++. |...++.||+++|+|+|+.. ...+...+.+.+-|..++.. +.+++.++|.+++++++.++.+.
T Consensus 93 ~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~~~~g~~~~~~--~~~~l~~~i~~~l~~~~~~~~l~ 166 (172)
T PF00534_consen 93 SDIFVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIINDGVNGFLFDPN--DIEELADAIEKLLNDPELRQKLG 166 (172)
T ss_dssp TSEEEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGTTTSEEEESTT--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeccccccccccccccccccccccceeecc----ccCCceeeccccceEEeCCC--CHHHHHHHHHHHHCCHHHHHHHH
Confidence 5666655 56778999999999999874 23445556666678888854 78999999999999999898888
Q ss_pred HHHHH
Q psy1202 84 RLSKQ 88 (136)
Q Consensus 84 ~~~~~ 88 (136)
+.+++
T Consensus 167 ~~~~~ 171 (172)
T PF00534_consen 167 KNARE 171 (172)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 87764
No 50
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.06 E-value=6.5e-05 Score=55.00 Aligned_cols=79 Identities=18% Similarity=0.332 Sum_probs=58.1
Q ss_pred CccEEEeCC----ChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcC-ceeEcCCCCCCHHHHHHHHHHHhcChHHHHH
Q psy1202 7 NCKLFITHG----GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKG-MGLITPHETITGDILYITIREVLNNPRYRDT 81 (136)
Q Consensus 7 ~~~~~I~hg----G~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G-~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~ 81 (136)
.+++++... ..+++.||+++|+|+|+.+..+.+.. +.+.+ .|..++.. +.+++.+++.++++|++.+++
T Consensus 252 ~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~----~~~~~~~g~~~~~~--~~~~~~~~i~~ll~~~~~~~~ 325 (348)
T cd03820 252 KASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE----IIEDGVNGLLVPNG--DVEALAEALLRLMEDEELRKR 325 (348)
T ss_pred hCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchHh----hhccCcceEEeCCC--CHHHHHHHHHHHHcCHHHHHH
Confidence 456666543 25789999999999999875544332 33344 77777643 569999999999999999888
Q ss_pred HHHHHHHHhc
Q psy1202 82 VGRLSKQVRS 91 (136)
Q Consensus 82 ~~~~~~~~~~ 91 (136)
+.+.+..+..
T Consensus 326 ~~~~~~~~~~ 335 (348)
T cd03820 326 MGANARESAE 335 (348)
T ss_pred HHHHHHHHHH
Confidence 8887766554
No 51
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.01 E-value=1e-05 Score=61.30 Aligned_cols=70 Identities=20% Similarity=0.319 Sum_probs=54.5
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVG 83 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 83 (136)
..+|++|+.+| +.+.|++++|+|+|.++...+ +..+.+.|++..+.. +.+++.+++.++++++..++++.
T Consensus 276 ~~ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~g~~~~~~~---~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 276 KNADLVLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVESGTNVLVGT---DPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred HcCcEEEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhheeeEEecCC---CHHHHHHHHHHHhcCchhhhcCC
Confidence 46899999998 667899999999999864322 345566788877752 47899999999999887776664
No 52
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.99 E-value=8.1e-05 Score=56.06 Aligned_cols=70 Identities=23% Similarity=0.262 Sum_probs=54.5
Q ss_pred ChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHHHHHHhc
Q psy1202 16 GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRLSKQVRS 91 (136)
Q Consensus 16 G~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 91 (136)
-.+++.||+++|+|+|..+..+ +...+.+.+.|..++.+ +.+++.++|.+++++++.++++.+.+.....
T Consensus 283 ~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~~~g~~~~~~--d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~ 352 (367)
T cd05844 283 LPVVLLEAQASGVPVVATRHGG----IPEAVEDGETGLLVPEG--DVAALAAALGRLLADPDLRARMGAAGRRRVE 352 (367)
T ss_pred CchHHHHHHHcCCCEEEeCCCC----chhheecCCeeEEECCC--CHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 3678999999999999987643 44555666788888743 6789999999999999888777776665543
No 53
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=5.6e-05 Score=50.17 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=44.6
Q ss_pred ccEEEeCCChhHHHHHHHhCCCEEeecCC--------cChHHHHHHHHHcCceeEcCC
Q psy1202 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGF--------SDQHQNCKLMEEKGMGLITPH 57 (136)
Q Consensus 8 ~~~~I~hgG~~s~~Eal~~g~P~i~~P~~--------~dq~~na~~~~~~G~g~~l~~ 57 (136)
++++|+|+|.||++.++..++|.|++|.. ++|...|..+++.+.-+...+
T Consensus 66 arIVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~sp 123 (161)
T COG5017 66 ARIVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACSP 123 (161)
T ss_pred ceEEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEcC
Confidence 45999999999999999999999999963 468999999999998888874
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=97.98 E-value=0.0001 Score=54.15 Aligned_cols=94 Identities=22% Similarity=0.327 Sum_probs=64.5
Q ss_pred CccEEEe----CCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHH
Q psy1202 7 NCKLFIT----HGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTV 82 (136)
Q Consensus 7 ~~~~~I~----hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~ 82 (136)
.++++|. -|..+++.||+++|+|+|+.+.. .....+...+.|..++.. +.+++.+++.+++++++.++++
T Consensus 275 ~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~----~~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~~ 348 (374)
T cd03801 275 AADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVG----GIPEVVEDGETGLLVPPG--DPEALAEAILRLLDDPELRRRL 348 (374)
T ss_pred hcCEEEecchhccccchHHHHHHcCCcEEEeCCC----ChhHHhcCCcceEEeCCC--CHHHHHHHHHHHHcChHHHHHH
Confidence 3566663 35577899999999999998753 234445556778777743 5799999999999999888887
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHH
Q psy1202 83 GRLSKQVRSLPYSNLDQAVRWAEHV 107 (136)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ie~~ 107 (136)
.+.++....+.. ..+..+..+..+
T Consensus 349 ~~~~~~~~~~~~-~~~~~~~~~~~~ 372 (374)
T cd03801 349 GEAARERVAERF-SWDRVAARTEEV 372 (374)
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHh
Confidence 777663333333 344555544443
No 55
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=97.97 E-value=0.00013 Score=44.85 Aligned_cols=83 Identities=17% Similarity=0.123 Sum_probs=59.1
Q ss_pred CCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHHHHHHhcCC
Q psy1202 14 HGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRLSKQVRSLP 93 (136)
Q Consensus 14 hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 93 (136)
.|-...+.|++++|+|+|.-+. ......+.+.--++..+ +.+++.+.+..+++|++.+++..+.+.......
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~~~~~~~~~----~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~~ 80 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFEDGEHIITYN----DPEELAEKIEYLLENPEERRRIAKNARERVLKR 80 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCCCCeEEEEC----CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 4456679999999999999854 23333332222455555 789999999999999999998888887777655
Q ss_pred CChHHHHHHHH
Q psy1202 94 YSNLDQAVRWA 104 (136)
Q Consensus 94 ~~~~~~~~~~i 104 (136)
++-..++.+++
T Consensus 81 ~t~~~~~~~il 91 (92)
T PF13524_consen 81 HTWEHRAEQIL 91 (92)
T ss_pred CCHHHHHHHHH
Confidence 55555554443
No 56
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.96 E-value=2.1e-05 Score=58.12 Aligned_cols=84 Identities=20% Similarity=0.200 Sum_probs=71.7
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRL 85 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 85 (136)
..+++.|+.||. |++|++..|+|.+++|+..+|..-|+.++..|+...+... +++..+...+.++.+|+..|.+...-
T Consensus 226 ke~d~aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l~~~-l~~~~~~~~~~~i~~d~~~rk~l~~~ 303 (318)
T COG3980 226 KEADLAISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQLGYH-LKDLAKDYEILQIQKDYARRKNLSFG 303 (318)
T ss_pred Hhcchheeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhccCC-CchHHHHHHHHHhhhCHHHhhhhhhc
Confidence 357889999885 6999999999999999999999999999999999888764 67788888889999999888877766
Q ss_pred HHHHhc
Q psy1202 86 SKQVRS 91 (136)
Q Consensus 86 ~~~~~~ 91 (136)
.+...+
T Consensus 304 ~~~i~d 309 (318)
T COG3980 304 SKLIGD 309 (318)
T ss_pred cceeec
Confidence 555544
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=97.95 E-value=0.00012 Score=53.74 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=58.0
Q ss_pred CccEEEeCC----ChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHH
Q psy1202 7 NCKLFITHG----GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTV 82 (136)
Q Consensus 7 ~~~~~I~hg----G~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~ 82 (136)
.+++++..+ -.++++||+++|+|+|+.+..+. ...+.+.+.|..++.+ +.+++.+++.+++.+++.++++
T Consensus 263 ~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~----~~~i~~~~~g~~~~~~--~~~~~~~~i~~l~~~~~~~~~~ 336 (359)
T cd03808 263 AADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGC----REAVIDGVNGFLVPPG--DAEALADAIERLIEDPELRARM 336 (359)
T ss_pred hccEEEecCcccCcchHHHHHHHcCCCEEEecCCCc----hhhhhcCcceEEECCC--CHHHHHHHHHHHHhCHHHHHHH
Confidence 456666443 26789999999999999865432 3444556677777643 6799999999999999888887
Q ss_pred HHHHHHHhc
Q psy1202 83 GRLSKQVRS 91 (136)
Q Consensus 83 ~~~~~~~~~ 91 (136)
.+.+.....
T Consensus 337 ~~~~~~~~~ 345 (359)
T cd03808 337 GQAARKRAE 345 (359)
T ss_pred HHHHHHHHH
Confidence 777766633
No 58
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=97.95 E-value=0.00018 Score=53.26 Aligned_cols=79 Identities=18% Similarity=0.215 Sum_probs=58.2
Q ss_pred CccEEEe-----CCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHH
Q psy1202 7 NCKLFIT-----HGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDT 81 (136)
Q Consensus 7 ~~~~~I~-----hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~ 81 (136)
.+++++. -|...+++||+++|+|+|+.+..+ ....+.+.+.|..++.+ +.+++.+++.+++++++.++.
T Consensus 262 ~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~--d~~~l~~~i~~l~~~~~~~~~ 335 (359)
T cd03823 262 EIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGG----MAELVRDGVNGLLFPPG--DAEDLAAALERLIDDPDLLER 335 (359)
T ss_pred hCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCC----HHHHhcCCCcEEEECCC--CHHHHHHHHHHHHhChHHHHH
Confidence 4566662 234567999999999999986532 44555665678887743 579999999999999988888
Q ss_pred HHHHHHHHhc
Q psy1202 82 VGRLSKQVRS 91 (136)
Q Consensus 82 ~~~~~~~~~~ 91 (136)
+.+.++....
T Consensus 336 ~~~~~~~~~~ 345 (359)
T cd03823 336 LRAGIEPPRS 345 (359)
T ss_pred HHHhHHHhhh
Confidence 8777655543
No 59
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=97.94 E-value=6.7e-05 Score=55.77 Aligned_cols=70 Identities=24% Similarity=0.317 Sum_probs=53.2
Q ss_pred hhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHHHHHHhcC
Q psy1202 17 IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRLSKQVRSL 92 (136)
Q Consensus 17 ~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 92 (136)
.++++||+++|+|+|+.+..+.+... .+.+.|..++.+ +.+++.++|.++++|++.++++.+.+..+..+
T Consensus 313 p~~~~Ea~~~G~pvi~~~~~~~~~~~----~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 382 (394)
T cd03794 313 PSKLFEYMAAGKPVLASVDGESAELV----EEAGAGLVVPPG--DPEALAAAILELLDDPEERAEMGENGRRYVEE 382 (394)
T ss_pred chHHHHHHHCCCcEEEecCCCchhhh----ccCCcceEeCCC--CHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 44579999999999999876544332 333677777643 67999999999999998888888777766553
No 60
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=97.88 E-value=0.00018 Score=53.56 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=64.9
Q ss_pred CccEEEe----C--CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHH
Q psy1202 7 NCKLFIT----H--GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRD 80 (136)
Q Consensus 7 ~~~~~I~----h--gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~ 80 (136)
.+|+++. - |..+++.||+++|+|+|+.+..+ ...+...+.|..++.+ +.+++.+++.+++++++.+.
T Consensus 267 ~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~~~g~~~~~~--d~~~~~~~l~~l~~~~~~~~ 339 (366)
T cd03822 267 AADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDGGTGLLVPPG--DPAALAEAIRRLLADPELAQ 339 (366)
T ss_pred hcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeCCCcEEEcCC--CHHHHHHHHHHHHcChHHHH
Confidence 4566552 1 44568999999999999987644 2334455677777643 57899999999999988888
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy1202 81 TVGRLSKQVRSLPYSNLDQAVRWAEHV 107 (136)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ie~~ 107 (136)
++.+.++..... . ..+.++..+..+
T Consensus 340 ~~~~~~~~~~~~-~-s~~~~~~~~~~~ 364 (366)
T cd03822 340 ALRARAREYARA-M-SWERVAERYLRL 364 (366)
T ss_pred HHHHHHHHHHhh-C-CHHHHHHHHHHH
Confidence 888877777665 3 355555555444
No 61
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=97.86 E-value=0.00023 Score=52.51 Aligned_cols=91 Identities=21% Similarity=0.339 Sum_probs=59.5
Q ss_pred CccEEEeCC----ChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHH
Q psy1202 7 NCKLFITHG----GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTV 82 (136)
Q Consensus 7 ~~~~~I~hg----G~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~ 82 (136)
.+++++..+ ..+++.||+++|+|+|+....+ +...+.+ .|..++.+ +.+++.+++.+++++++.++++
T Consensus 268 ~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~----~~e~~~~--~g~~~~~~--~~~~l~~~i~~l~~~~~~~~~~ 339 (365)
T cd03807 268 ALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGD----NAELVGD--TGFLVPPG--DPEALAEAIEALLADPALRQAL 339 (365)
T ss_pred hCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCC----hHHHhhc--CCEEeCCC--CHHHHHHHHHHHHhChHHHHHH
Confidence 456666443 3578999999999999975433 3333333 44555532 6799999999999998777776
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHH
Q psy1202 83 GRLSKQVRSLPYSNLDQAVRWAEH 106 (136)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ie~ 106 (136)
.+.++....+.. ..+..+.....
T Consensus 340 ~~~~~~~~~~~~-s~~~~~~~~~~ 362 (365)
T cd03807 340 GEAARERIEENF-SIEAMVEAYEE 362 (365)
T ss_pred HHHHHHHHHHhC-CHHHHHHHHHH
Confidence 666655544333 34455544443
No 62
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=97.85 E-value=0.00022 Score=52.83 Aligned_cols=80 Identities=23% Similarity=0.288 Sum_probs=57.4
Q ss_pred CccEEEeCC----ChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHH
Q psy1202 7 NCKLFITHG----GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTV 82 (136)
Q Consensus 7 ~~~~~I~hg----G~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~ 82 (136)
.+++++... -.++++||+++|+|+|+.+..+ ....+.. +.|...+. +.+++.++|.+++++++.++++
T Consensus 281 ~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~~~-~~~~~~~~---~~~~~~~~i~~l~~~~~~~~~~ 352 (375)
T cd03821 281 DADLFVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELIEY-GCGWVVDD---DVDALAAALRRALELPQRLKAM 352 (375)
T ss_pred hCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHhhc-CceEEeCC---ChHHHHHHHHHHHhCHHHHHHH
Confidence 456655332 2578999999999999986533 2333444 77777764 4489999999999999888888
Q ss_pred HHHHHHHhcCCC
Q psy1202 83 GRLSKQVRSLPY 94 (136)
Q Consensus 83 ~~~~~~~~~~~~ 94 (136)
.+.++....+..
T Consensus 353 ~~~~~~~~~~~~ 364 (375)
T cd03821 353 GENGRALVEERF 364 (375)
T ss_pred HHHHHHHHHHhc
Confidence 887777743333
No 63
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.84 E-value=0.00028 Score=53.61 Aligned_cols=95 Identities=19% Similarity=0.261 Sum_probs=64.5
Q ss_pred CccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHH
Q psy1202 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTV 82 (136)
Q Consensus 7 ~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~ 82 (136)
.+|+++.. |-..+++||+++|+|+|+....+ +...+.+...|..++.+ +.+++.+++.+++++++.++.+
T Consensus 272 ~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~~~g~~~~~~--d~~~la~~i~~l~~~~~~~~~~ 345 (374)
T TIGR03088 272 ALDLFVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQHGVTGALVPPG--DAVALARALQPYVSDPAARRAH 345 (374)
T ss_pred hcCEEEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcCCCceEEeCCC--CHHHHHHHHHHHHhCHHHHHHH
Confidence 45666632 44678999999999999986533 33344444567777642 6789999999999999887777
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHH
Q psy1202 83 GRLSKQVRSLPYSNLDQAVRWAEHVA 108 (136)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ie~~~ 108 (136)
.+.++......++ .+..+...+.+.
T Consensus 346 ~~~a~~~~~~~fs-~~~~~~~~~~~y 370 (374)
T TIGR03088 346 GAAGRARAEQQFS-INAMVAAYAGLY 370 (374)
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHH
Confidence 7666655433343 445555554443
No 64
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.84 E-value=0.00019 Score=55.37 Aligned_cols=94 Identities=17% Similarity=0.239 Sum_probs=65.1
Q ss_pred CccEEE--eC--CC-hhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHH
Q psy1202 7 NCKLFI--TH--GG-IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDT 81 (136)
Q Consensus 7 ~~~~~I--~h--gG-~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~ 81 (136)
.++++| +. .| .+.++||+++|+|+|+.+...+.. ....|.|..+. .+.+++.++|.++++|++.+++
T Consensus 297 ~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~~~g~lv~---~~~~~la~ai~~ll~~~~~~~~ 368 (397)
T TIGR03087 297 HAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALPGAELLVA---ADPADFAAAILALLANPAEREE 368 (397)
T ss_pred hCCEEEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccCCcceEeC---CCHHHHHHHHHHHHcCHHHHHH
Confidence 456665 22 34 446999999999999987532211 12235666664 2789999999999999998888
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy1202 82 VGRLSKQVRSLPYSNLDQAVRWAEHVAA 109 (136)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ie~~~~ 109 (136)
+.+.++....+.+ ..+..+..++.+++
T Consensus 369 ~~~~ar~~v~~~f-sw~~~~~~~~~~l~ 395 (397)
T TIGR03087 369 LGQAARRRVLQHY-HWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHhc
Confidence 8887776654333 46677777777653
No 65
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.83 E-value=0.0002 Score=53.45 Aligned_cols=71 Identities=21% Similarity=0.239 Sum_probs=52.9
Q ss_pred hhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHHHHHHhcC
Q psy1202 17 IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRLSKQVRSL 92 (136)
Q Consensus 17 ~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 92 (136)
..+++||+++|+|+|+.+..+....... ..+.|..++.+ +.+++.++|.++++|++.++++++.+.....+
T Consensus 279 g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~~~g~~~~~~--d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 349 (357)
T cd03795 279 GIVLLEAMAFGKPVISTEIGTGGSYVNL---HGVTGLVVPPG--DPAALAEAIRRLLEDPELRERLGEAARERAEE 349 (357)
T ss_pred chHHHHHHHcCCCEEecCCCCchhHHhh---CCCceEEeCCC--CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 5579999999999999865544432222 25677777633 68999999999999998888888777665543
No 66
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.83 E-value=0.00034 Score=52.73 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=63.7
Q ss_pred CccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHH
Q psy1202 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTV 82 (136)
Q Consensus 7 ~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~ 82 (136)
.+++++.. |...++.||+++|+|+|+.+.. .....+.+...|..++.+ +.+++.+++.+++++++.++++
T Consensus 270 ~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~~~~G~~~~~~--~~~~l~~~i~~l~~~~~~~~~~ 343 (371)
T cd04962 270 IADLFLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKHGETGFLVDVG--DVEAMAEYALSLLEDDELWQEF 343 (371)
T ss_pred hcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcCCCceEEcCCC--CHHHHHHHHHHHHhCHHHHHHH
Confidence 35665532 3456899999999999997543 234455555677777643 6789999999999999888888
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHH
Q psy1202 83 GRLSKQVRSLPYSNLDQAVRWAEHV 107 (136)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ie~~ 107 (136)
++.++.......+ .+.++..+..+
T Consensus 344 ~~~~~~~~~~~fs-~~~~~~~~~~~ 367 (371)
T cd04962 344 SRAARNRAAERFD-SERIVPQYEAL 367 (371)
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHH
Confidence 7777766333333 34444444443
No 67
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.83 E-value=0.00056 Score=52.05 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=65.0
Q ss_pred CCccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCC----HHHHHHHHHHHhcChH
Q psy1202 6 RNCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETIT----GDILYITIREVLNNPR 77 (136)
Q Consensus 6 ~~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~----~~~l~~~i~~ll~~~~ 77 (136)
..+|+++.- +...+++||+++|+|+|+....+ ....+.+.+.|..++.+..+ .+.+.++|.++++|++
T Consensus 279 ~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~----~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~ 354 (388)
T TIGR02149 279 SNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGG----IPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLADPE 354 (388)
T ss_pred HhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCC----HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHH
Confidence 346777753 23456899999999999986532 44455566678888754322 2789999999999998
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy1202 78 YRDTVGRLSKQVRSLPYSNLDQAVRWAEHV 107 (136)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~ 107 (136)
.++++.+.+.....+.++ .+.++..+..+
T Consensus 355 ~~~~~~~~a~~~~~~~~s-~~~~~~~~~~~ 383 (388)
T TIGR02149 355 LAKKMGIAGRKRAEEEFS-WGSIAKKTVEM 383 (388)
T ss_pred HHHHHHHHHHHHHHHhCC-HHHHHHHHHHH
Confidence 888887776665433333 44444444433
No 68
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.83 E-value=0.00037 Score=54.27 Aligned_cols=85 Identities=16% Similarity=0.148 Sum_probs=61.2
Q ss_pred hhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCCCC
Q psy1202 17 IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLN-NPRYRDTVGRLSKQVRSLPYS 95 (136)
Q Consensus 17 ~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~~~ 95 (136)
.++++||+++|+|+|+...-+ ....+.+...|..++.+ +.+++.++|.++++ |++.++++.+.++......++
T Consensus 318 p~~llEAma~G~PVI~t~~~g----~~E~v~~~~~G~lv~~~--d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~ 391 (406)
T PRK15427 318 PVALMEAMAVGIPVVSTLHSG----IPELVEADKSGWLVPEN--DAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFN 391 (406)
T ss_pred cHHHHHHHhCCCCEEEeCCCC----chhhhcCCCceEEeCCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Confidence 467899999999999985433 23344445577777643 68999999999999 998888888877766655444
Q ss_pred hHHHHHHHHHHHH
Q psy1202 96 NLDQAVRWAEHVA 108 (136)
Q Consensus 96 ~~~~~~~~ie~~~ 108 (136)
.+.....+..++
T Consensus 392 -~~~~~~~l~~~~ 403 (406)
T PRK15427 392 -QQVINRELASLL 403 (406)
T ss_pred -HHHHHHHHHHHH
Confidence 445555555544
No 69
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.78 E-value=0.00024 Score=55.22 Aligned_cols=85 Identities=18% Similarity=0.253 Sum_probs=61.0
Q ss_pred CCccEEEeCC----ChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHH
Q psy1202 6 RNCKLFITHG----GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDT 81 (136)
Q Consensus 6 ~~~~~~I~hg----G~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~ 81 (136)
..+++|+... -..+++||+++|+|+|+....+ ....+.+.+.|..++. ..+.+++.++|.++++|++.+++
T Consensus 309 ~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i~~~~~G~l~~~-~~~~~~la~~I~~ll~~~~~~~~ 383 (407)
T cd04946 309 NPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIVDNGGNGLLLSK-DPTPNELVSSLSKFIDNEEEYQT 383 (407)
T ss_pred cCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHhcCCCcEEEeCC-CCCHHHHHHHHHHHHhCHHHHHH
Confidence 3466776443 2677999999999999875433 3444555557877763 23679999999999999998888
Q ss_pred HHHHHHHHhcCCCC
Q psy1202 82 VGRLSKQVRSLPYS 95 (136)
Q Consensus 82 ~~~~~~~~~~~~~~ 95 (136)
+++.++....+..+
T Consensus 384 m~~~ar~~~~~~f~ 397 (407)
T cd04946 384 MREKAREKWEENFN 397 (407)
T ss_pred HHHHHHHHHHHHcC
Confidence 88877776654443
No 70
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=97.74 E-value=0.00056 Score=53.63 Aligned_cols=94 Identities=14% Similarity=0.104 Sum_probs=65.6
Q ss_pred ccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHH
Q psy1202 8 CKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVG 83 (136)
Q Consensus 8 ~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 83 (136)
+|+|+.. |-..+++||+++|+|+|+...-+ ....+.+...|..++.+ ++++++++|.++++|++.++++.
T Consensus 341 ~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv~~~~~G~lv~~~--d~~~la~~i~~ll~~~~~~~~~~ 414 (439)
T TIGR02472 341 RGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDIIANCRNGLLVDVL--DLEAIASALEDALSDSSQWQLWS 414 (439)
T ss_pred CCEEecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHhcCCCcEEEeCCC--CHHHHHHHHHHHHhCHHHHHHHH
Confidence 4777754 33568999999999999986533 33344444567777643 67999999999999998888888
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHH
Q psy1202 84 RLSKQVRSLPYSNLDQAVRWAEHVA 108 (136)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ie~~~ 108 (136)
+.++....+.+ ..+.++..++.++
T Consensus 415 ~~a~~~~~~~f-sw~~~~~~~~~l~ 438 (439)
T TIGR02472 415 RNGIEGVRRHY-SWDAHVEKYLRIL 438 (439)
T ss_pred HHHHHHHHHhC-CHHHHHHHHHHHh
Confidence 87766544333 4556666555443
No 71
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=97.71 E-value=0.00046 Score=52.38 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=58.2
Q ss_pred CccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHH
Q psy1202 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTV 82 (136)
Q Consensus 7 ~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~ 82 (136)
.+|+++.. |-..+++||+++|+|+|+.+..+ ....+.+.+.|..++.+ +.+++.++|.+++++++.++++
T Consensus 302 ~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~~~~g~~~~~~--~~~~l~~~i~~l~~~~~~~~~~ 375 (398)
T cd03800 302 AADVFVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVDGVTGLLVDPR--DPEALAAALRRLLTDPALRRRL 375 (398)
T ss_pred hCCEEEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccCCCCeEEeCCC--CHHHHHHHHHHHHhCHHHHHHH
Confidence 35666633 33468999999999999886533 44455666788888743 6899999999999999888877
Q ss_pred HHHHHHHh
Q psy1202 83 GRLSKQVR 90 (136)
Q Consensus 83 ~~~~~~~~ 90 (136)
.+.++...
T Consensus 376 ~~~a~~~~ 383 (398)
T cd03800 376 SRAGLRRA 383 (398)
T ss_pred HHHHHHHH
Confidence 77766654
No 72
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=97.70 E-value=0.00096 Score=51.27 Aligned_cols=94 Identities=15% Similarity=0.064 Sum_probs=64.9
Q ss_pred CccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHH
Q psy1202 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTV 82 (136)
Q Consensus 7 ~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~ 82 (136)
.+|+++.. |...+++||+++|+|+|+....+ ....+.+.+.|..++.+ +.+++.++|.+++++++.++++
T Consensus 302 ~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~--d~~~la~~i~~~l~~~~~~~~~ 375 (405)
T TIGR03449 302 AADVVAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVADGETGLLVDGH--DPADWADALARLLDDPRTRIRM 375 (405)
T ss_pred hCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhccCCceEECCCC--CHHHHHHHHHHHHhCHHHHHHH
Confidence 45665532 33568999999999999986533 22344555677777643 6799999999999999888888
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHH
Q psy1202 83 GRLSKQVRSLPYSNLDQAVRWAEHVA 108 (136)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ie~~~ 108 (136)
.+.+...... . ..+..+..++.+.
T Consensus 376 ~~~~~~~~~~-f-sw~~~~~~~~~~y 399 (405)
T TIGR03449 376 GAAAVEHAAG-F-SWAATADGLLSSY 399 (405)
T ss_pred HHHHHHHHHh-C-CHHHHHHHHHHHH
Confidence 7777665543 3 4556665555554
No 73
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=97.67 E-value=0.00046 Score=51.15 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=56.0
Q ss_pred CccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHH
Q psy1202 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTV 82 (136)
Q Consensus 7 ~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~ 82 (136)
.+++++.. +...+++||+++|+|+|+.+.. .....+.+.+.|..++.++ . ++.+++.+++++++.++.+
T Consensus 278 ~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~----~~~~~i~~~~~g~~~~~~~--~-~~~~~i~~l~~~~~~~~~~ 350 (374)
T cd03817 278 AADLFVFASTTETQGLVLLEAMAAGLPVVAVDAP----GLPDLVADGENGFLFPPGD--E-ALAEALLRLLQDPELRRRL 350 (374)
T ss_pred HcCEEEecccccCcChHHHHHHHcCCcEEEeCCC----ChhhheecCceeEEeCCCC--H-HHHHHHHHHHhChHHHHHH
Confidence 35666632 3457899999999999998643 2345556667787777432 2 9999999999999877777
Q ss_pred HHHHHHHhc
Q psy1202 83 GRLSKQVRS 91 (136)
Q Consensus 83 ~~~~~~~~~ 91 (136)
.+.++....
T Consensus 351 ~~~~~~~~~ 359 (374)
T cd03817 351 SKNAEESAE 359 (374)
T ss_pred HHHHHHHHH
Confidence 776666654
No 74
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=97.67 E-value=0.00032 Score=54.05 Aligned_cols=70 Identities=21% Similarity=0.226 Sum_probs=52.6
Q ss_pred hhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHHHHHHhcC
Q psy1202 17 IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRLSKQVRSL 92 (136)
Q Consensus 17 ~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 92 (136)
..+++||+++|+|+|..... .....+.+...|..++.+ +++++.++|.+++++++.++++.+.++....+
T Consensus 314 ~~~llEAmA~G~PVIas~~~----g~~e~i~~~~~G~lv~~~--d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~ 383 (396)
T cd03818 314 SWSLLEAMACGCLVVGSDTA----PVREVITDGENGLLVDFF--DPDALAAAVIELLDDPARRARLRRAARRTALR 383 (396)
T ss_pred chHHHHHHHCCCCEEEcCCC----CchhhcccCCceEEcCCC--CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 34799999999999997542 233444444567777643 68999999999999998888888777665543
No 75
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.63 E-value=0.0011 Score=51.08 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=61.2
Q ss_pred CccEEEeC----CC-hhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHH
Q psy1202 7 NCKLFITH----GG-IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDT 81 (136)
Q Consensus 7 ~~~~~I~h----gG-~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~ 81 (136)
.+|+++.. .| ..+++||+++|+|+|+...-+ +...+.+...|..+.. ..+.+++.++|.++++|++.+ +
T Consensus 276 ~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~~~~~G~~l~~-~~d~~~la~~I~~ll~d~~~~-~ 349 (380)
T PRK15484 276 LADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVLEGITGYHLAE-PMTSDSIISDINRTLADPELT-Q 349 (380)
T ss_pred hCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhcccCCceEEEeC-CCCHHHHHHHHHHHHcCHHHH-H
Confidence 46776643 23 367899999999999986532 3344445456664421 226899999999999999864 4
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy1202 82 VGRLSKQVRSLPYSNLDQAVRWAEHVAA 109 (136)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ie~~~~ 109 (136)
+.+.++....+.+ ..+.++..++.++.
T Consensus 350 ~~~~ar~~~~~~f-sw~~~a~~~~~~l~ 376 (380)
T PRK15484 350 IAEQAKDFVFSKY-SWEGVTQRFEEQIH 376 (380)
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHH
Confidence 4444544333223 45666666666654
No 76
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=97.63 E-value=0.001 Score=49.72 Aligned_cols=95 Identities=15% Similarity=0.196 Sum_probs=63.0
Q ss_pred CccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHH
Q psy1202 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTV 82 (136)
Q Consensus 7 ~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~ 82 (136)
.+++++.. |..++++||+++|+|+|+....+-. ..+.+.+.|..++. .+.+++.+++.+++++++.+.++
T Consensus 264 ~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~----e~~~~~~~g~~~~~--~~~~~~~~~l~~l~~~~~~~~~~ 337 (365)
T cd03825 264 AADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIP----DIVDHGVTGYLAKP--GDPEDLAEGIEWLLADPDEREEL 337 (365)
T ss_pred hCCEEEeccccccccHHHHHHHhcCCCEEEecCCCCh----hheeCCCceEEeCC--CCHHHHHHHHHHHHhCHHHHHHH
Confidence 46777764 3357899999999999987543221 22333346766663 26789999999999999877777
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHH
Q psy1202 83 GRLSKQVRSLPYSNLDQAVRWAEHVA 108 (136)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ie~~~ 108 (136)
.+.++....... ..+..++....+.
T Consensus 338 ~~~~~~~~~~~~-s~~~~~~~~~~~y 362 (365)
T cd03825 338 GEAARELAENEF-DSRVQAKRYLSLY 362 (365)
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 776666554323 3455555554443
No 77
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.62 E-value=0.00091 Score=50.99 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=62.3
Q ss_pred CCccEEEeCC----ChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHH
Q psy1202 6 RNCKLFITHG----GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDT 81 (136)
Q Consensus 6 ~~~~~~I~hg----G~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~ 81 (136)
..+|+|+..+ -..+++||+++|+|+|+....+ ....+.+...|..++ +.+.+..+|.+++++++.+++
T Consensus 272 ~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~~~g~~~~----~~~~~a~~i~~ll~~~~~~~~ 343 (372)
T cd03792 272 RASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDGETGFLVD----TVEEAAVRILYLLRDPELRRK 343 (372)
T ss_pred HhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccCCceEEeC----CcHHHHHHHHHHHcCHHHHHH
Confidence 3567776433 2468999999999999986433 223344455677665 457788899999999999888
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHH
Q psy1202 82 VGRLSKQVRSLPYSNLDQAVRWAEHV 107 (136)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ie~~ 107 (136)
+.+.++......++ .+..+..+..+
T Consensus 344 ~~~~a~~~~~~~~s-~~~~~~~~~~~ 368 (372)
T cd03792 344 MGANAREHVRENFL-ITRHLKDYLYL 368 (372)
T ss_pred HHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 88887776543333 34444444333
No 78
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=97.55 E-value=0.0016 Score=47.94 Aligned_cols=66 Identities=23% Similarity=0.296 Sum_probs=48.3
Q ss_pred CccEEE----eCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHH
Q psy1202 7 NCKLFI----THGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRY 78 (136)
Q Consensus 7 ~~~~~I----~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~ 78 (136)
.+++++ .-|..++++||+++|+|+|+.+..+ ....+.+.+.|...+.. +.+++.+++.++++++..
T Consensus 278 ~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 278 AADVFVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEIITDGENGLLVPPG--DPEALAEAILRLLADPWL 347 (377)
T ss_pred hcCeeecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHhcCCcceeEECCC--CHHHHHHHHHHHhcCcHH
Confidence 345555 2355678999999999999986543 33445566667777643 679999999999999875
No 79
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=97.54 E-value=0.0016 Score=51.46 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=62.0
Q ss_pred CccEEEeCC----ChhHHHHHHHhCCCEEeecCCcChHHHHHHHHH---cCceeEcCCCCCCHHHHHHHHHHHhcChHHH
Q psy1202 7 NCKLFITHG----GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE---KGMGLITPHETITGDILYITIREVLNNPRYR 79 (136)
Q Consensus 7 ~~~~~I~hg----G~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~---~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~ 79 (136)
.+|+++... -..+++||+++|+|+|+...-+ ....+.+ .+.|..++.+ +.+++.++|.++++|++.+
T Consensus 331 ~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~~--d~~~la~~i~~ll~~~~~~ 404 (465)
T PLN02871 331 SGDVFVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTPG--DVDDCVEKLETLLADPELR 404 (465)
T ss_pred HCCEEEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCCC--CHHHHHHHHHHHHhCHHHH
Confidence 466777433 2457899999999999876432 2223344 5678887743 6799999999999999888
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHH
Q psy1202 80 DTVGRLSKQVRSLPYSNLDQAVRWA 104 (136)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~i 104 (136)
+++.+.++....+ + ..+..+..+
T Consensus 405 ~~~~~~a~~~~~~-f-sw~~~a~~l 427 (465)
T PLN02871 405 ERMGAAAREEVEK-W-DWRAATRKL 427 (465)
T ss_pred HHHHHHHHHHHHh-C-CHHHHHHHH
Confidence 8888777665543 3 344444444
No 80
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=97.50 E-value=0.0012 Score=49.12 Aligned_cols=71 Identities=25% Similarity=0.351 Sum_probs=52.1
Q ss_pred CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHHHHHHhc
Q psy1202 15 GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRLSKQVRS 91 (136)
Q Consensus 15 gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 91 (136)
|..++++||+++|+|+|+.+..+ . ...+.+...|..++.+ +.+++.++|.++++++..+.++.+.++....
T Consensus 273 ~~~~~~~Ea~a~G~Pvi~~~~~~-~---~~~i~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~ 343 (355)
T cd03799 273 GLPVVLMEAMAMGLPVISTDVSG-I---PELVEDGETGLLVPPG--DPEALADAIERLLDDPELRREMGEAGRARVE 343 (355)
T ss_pred CccHHHHHHHHcCCCEEecCCCC-c---chhhhCCCceEEeCCC--CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 44678999999999999976532 1 2234444478777643 6799999999999999877777776665543
No 81
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=97.49 E-value=0.00088 Score=50.00 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=55.4
Q ss_pred CccEEEeCC----ChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHh-cChHHHHH
Q psy1202 7 NCKLFITHG----GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVL-NNPRYRDT 81 (136)
Q Consensus 7 ~~~~~I~hg----G~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~ 81 (136)
.+++++... ..++++||+++|+|+|+.... .....+.+.|.....+ +.+++.+++.+++ .++..++.
T Consensus 262 ~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~e~i~~~g~~~~~~----~~~~~~~~i~~ll~~~~~~~~~ 333 (360)
T cd04951 262 AADLFVLSSAWEGFGLVVAEAMACELPVVATDAG----GVREVVGDSGLIVPIS----DPEALANKIDEILKMSGEERDI 333 (360)
T ss_pred hhceEEecccccCCChHHHHHHHcCCCEEEecCC----ChhhEecCCceEeCCC----CHHHHHHHHHHHHhCCHHHHHH
Confidence 345555432 257899999999999986442 2333444444443322 7889999999998 56666766
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHH
Q psy1202 82 VGRLSKQVRSLPYSNLDQAVRWAEHV 107 (136)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ie~~ 107 (136)
+.+....+.. .+ ..+..+...+.+
T Consensus 334 ~~~~~~~~~~-~~-s~~~~~~~~~~~ 357 (360)
T cd04951 334 IGARRERIVK-KF-SINSIVQQWLTL 357 (360)
T ss_pred HHHHHHHHHH-hc-CHHHHHHHHHHH
Confidence 6665333333 23 344555544444
No 82
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=97.44 E-value=0.0013 Score=51.21 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=53.4
Q ss_pred hhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcC---hHHHHHHHHHHHHHhc
Q psy1202 17 IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNN---PRYRDTVGRLSKQVRS 91 (136)
Q Consensus 17 ~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~~ 91 (136)
.++++||+++|+|+|+.... .....+++.+.|..++ +.++++++|.++++| ++.++++++.++.+..
T Consensus 331 p~~~~Eama~G~PVI~s~~~----~~~eiv~~~~~G~lv~----d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~ 400 (415)
T cd03816 331 PMKVVDMFGCGLPVCALDFK----CIDELVKHGENGLVFG----DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEESE 400 (415)
T ss_pred cHHHHHHHHcCCCEEEeCCC----CHHHHhcCCCCEEEEC----CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Confidence 56799999999999997542 3445666667788774 789999999999999 8888888887777664
No 83
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.35 E-value=0.0025 Score=50.61 Aligned_cols=80 Identities=23% Similarity=0.310 Sum_probs=56.7
Q ss_pred CccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHc------CceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK------GMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 7 ~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~------G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
.+|+++.. |-.++++||+++|+|+|+....+ ....+.+. ..|..++.. +.+++.+++.++++|+
T Consensus 370 ~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~----~~elv~~~~~~~~g~~G~lv~~~--d~~~la~ai~~ll~~~ 443 (475)
T cd03813 370 KLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGS----CRELIEGADDEALGPAGEVVPPA--DPEALARAILRLLKDP 443 (475)
T ss_pred hCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCC----hHHHhcCCcccccCCceEEECCC--CHHHHHHHHHHHhcCH
Confidence 45665533 44678999999999999964422 22333331 267777643 6899999999999999
Q ss_pred HHHHHHHHHHHHHhcC
Q psy1202 77 RYRDTVGRLSKQVRSL 92 (136)
Q Consensus 77 ~~~~~~~~~~~~~~~~ 92 (136)
+.++++.+.++....+
T Consensus 444 ~~~~~~~~~a~~~v~~ 459 (475)
T cd03813 444 ELRRAMGEAGRKRVER 459 (475)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888888877665543
No 84
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.34 E-value=0.00098 Score=50.56 Aligned_cols=79 Identities=24% Similarity=0.327 Sum_probs=55.6
Q ss_pred CccEEE--eC--CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHH
Q psy1202 7 NCKLFI--TH--GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTV 82 (136)
Q Consensus 7 ~~~~~I--~h--gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~ 82 (136)
.++++| ++ |...+++||+++|+|+|+..... .....+.+...|..++.. +.+++.++|..++++++.++++
T Consensus 278 ~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~~~G~lv~~~--d~~~la~~i~~ll~~~~~~~~~ 352 (372)
T cd04949 278 KAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDGENGYLVPKG--DIEALAEAIIELLNDPKLLQKF 352 (372)
T ss_pred hhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccCCCceEeCCC--cHHHHHHHHHHHHcCHHHHHHH
Confidence 355554 32 34668999999999999975321 123445555677777743 6799999999999999777777
Q ss_pred HHHHHHHh
Q psy1202 83 GRLSKQVR 90 (136)
Q Consensus 83 ~~~~~~~~ 90 (136)
.+.+....
T Consensus 353 ~~~a~~~~ 360 (372)
T cd04949 353 SEAAYENA 360 (372)
T ss_pred HHHHHHHH
Confidence 76665553
No 85
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=97.30 E-value=0.0026 Score=48.35 Aligned_cols=78 Identities=13% Similarity=0.110 Sum_probs=52.3
Q ss_pred CccEEEeC----CChhHHHHHHHhCCCEEeec-CCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHH--H
Q psy1202 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMP-GFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRY--R 79 (136)
Q Consensus 7 ~~~~~I~h----gG~~s~~Eal~~g~P~i~~P-~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~--~ 79 (136)
.+++++.. |-..+++||+++|+|+|+.. .-+ ....+.+...|..++.+ +.+++.++|.++++|++. .
T Consensus 257 ~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~~~G~lv~~~--d~~~la~~i~~l~~~~~~~~~ 330 (359)
T PRK09922 257 NVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPGLNGELYTPG--NIDEFVGKLNKVISGEVKYQH 330 (359)
T ss_pred cCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCCCceEEECCC--CHHHHHHHHHHHHhCcccCCH
Confidence 45666643 33688999999999999985 322 22334444567777643 789999999999999873 4
Q ss_pred HHHHHHHHHHh
Q psy1202 80 DTVGRLSKQVR 90 (136)
Q Consensus 80 ~~~~~~~~~~~ 90 (136)
....+..+.+.
T Consensus 331 ~~~~~~~~~~~ 341 (359)
T PRK09922 331 DAIPNSIERFY 341 (359)
T ss_pred HHHHHHHHHhh
Confidence 44444444443
No 86
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=97.30 E-value=0.0014 Score=48.93 Aligned_cols=74 Identities=15% Similarity=0.223 Sum_probs=51.4
Q ss_pred ccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHH
Q psy1202 8 CKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVG 83 (136)
Q Consensus 8 ~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 83 (136)
+++++.. |-.++++||+++|+|+|+....+.. ..+.+ +.+.....+ ++++++++|.++++|++.++++.
T Consensus 267 adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~----~~i~~-~~~~~~~~~--~~~~~a~~i~~l~~~~~~~~~~~ 339 (358)
T cd03812 267 MDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKE----VDLTD-LVKFLSLDE--SPEIWAEEILKLKSEDRRERSSE 339 (358)
T ss_pred cCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchh----hhhcc-CccEEeCCC--CHHHHHHHHHHHHhCcchhhhhh
Confidence 4555532 4468899999999999998654422 23333 455555422 57999999999999998887776
Q ss_pred HHHHH
Q psy1202 84 RLSKQ 88 (136)
Q Consensus 84 ~~~~~ 88 (136)
..++.
T Consensus 340 ~~~~~ 344 (358)
T cd03812 340 SIKKK 344 (358)
T ss_pred hhhhc
Confidence 65543
No 87
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.29 E-value=0.002 Score=51.19 Aligned_cols=101 Identities=14% Similarity=0.224 Sum_probs=59.8
Q ss_pred CCccEEE---eCCChhHHHHHHHhCCCEEeecCCcC-hHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHH
Q psy1202 6 RNCKLFI---THGGIHSSMEAVYHGVPVVMMPGFSD-QHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDT 81 (136)
Q Consensus 6 ~~~~~~I---~hgG~~s~~Eal~~g~P~i~~P~~~d-q~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~ 81 (136)
..+|+++ ..+|+.|.+||+..|||++..|-..- ...-+..+...|+...+.. +.++..+.-.++.+|++++++
T Consensus 360 ~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~---s~~eYv~~Av~La~D~~~l~~ 436 (468)
T PF13844_consen 360 QLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD---SEEEYVEIAVRLATDPERLRA 436 (468)
T ss_dssp GG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S---SHHHHHHHHHHHHH-HHHHHH
T ss_pred hhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC---CHHHHHHHHHHHhCCHHHHHH
Confidence 3456654 56788999999999999999984332 2445667788899877764 678877777788888877776
Q ss_pred HHHHH-HHHhcCCCChHHHHHHHHHHHHH
Q psy1202 82 VGRLS-KQVRSLPYSNLDQAVRWAEHVAA 109 (136)
Q Consensus 82 ~~~~~-~~~~~~~~~~~~~~~~~ie~~~~ 109 (136)
.++-- +.....|.-.....+..+|..++
T Consensus 437 lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 437 LRAKLRDRRSKSPLFDPKRFARNLEAAYR 465 (468)
T ss_dssp HHHHHHHHHHHSGGG-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 66443 34444443344566666666543
No 88
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=97.23 E-value=0.0023 Score=47.78 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=54.4
Q ss_pred CccEEEeCC-----ChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHh-cChHHHH
Q psy1202 7 NCKLFITHG-----GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVL-NNPRYRD 80 (136)
Q Consensus 7 ~~~~~I~hg-----G~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll-~~~~~~~ 80 (136)
.+|+++.-. ..++++||+++|+|+|+....+ ....+.+.+.|..++.+ +.+++.++|..++ .+++.++
T Consensus 263 ~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~ 336 (355)
T cd03819 263 LADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETVRPGETGLLVPPG--DAEALAQALDQILSLLPEGRA 336 (355)
T ss_pred hCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHHhCCCceEEeCCC--CHHHHHHHHHHHHhhCHHHHH
Confidence 456666433 3568999999999999875432 23444455577777643 7789999996555 5788777
Q ss_pred HHHHHHHHHhc
Q psy1202 81 TVGRLSKQVRS 91 (136)
Q Consensus 81 ~~~~~~~~~~~ 91 (136)
++.+.++....
T Consensus 337 ~~~~~a~~~~~ 347 (355)
T cd03819 337 KMFAKARMCVE 347 (355)
T ss_pred HHHHHHHHHHH
Confidence 77777666554
No 89
>PRK10307 putative glycosyl transferase; Provisional
Probab=97.22 E-value=0.0057 Score=47.30 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=57.1
Q ss_pred hHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHHHHHHhcCCCChH
Q psy1202 18 HSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRLSKQVRSLPYSNL 97 (136)
Q Consensus 18 ~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 97 (136)
+.+.|++++|+|+|+....+.. ....+. +.|+.++.+ +.++++++|.++++|++.++++++.++....+.++ .
T Consensus 322 ~kl~eama~G~PVi~s~~~g~~--~~~~i~--~~G~~~~~~--d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs-~ 394 (412)
T PRK10307 322 SKLTNMLASGRNVVATAEPGTE--LGQLVE--GIGVCVEPE--SVEALVAAIAALARQALLRPKLGTVAREYAERTLD-K 394 (412)
T ss_pred HHHHHHHHcCCCEEEEeCCCch--HHHHHh--CCcEEeCCC--CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcC-H
Confidence 3478999999999998654421 112222 677777643 67999999999999998888888888776554343 3
Q ss_pred HHHHHHHHHH
Q psy1202 98 DQAVRWAEHV 107 (136)
Q Consensus 98 ~~~~~~ie~~ 107 (136)
+..+..++.+
T Consensus 395 ~~~~~~~~~~ 404 (412)
T PRK10307 395 ENVLRQFIAD 404 (412)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 90
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=97.07 E-value=0.0045 Score=45.22 Aligned_cols=72 Identities=24% Similarity=0.378 Sum_probs=50.9
Q ss_pred CccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHH---HHHHHHHhcChHHH
Q psy1202 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDIL---YITIREVLNNPRYR 79 (136)
Q Consensus 7 ~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l---~~~i~~ll~~~~~~ 79 (136)
.+++++.. |..++++||+++|+|+|+.... .....+.+.+.|...+.+ +.+.+ .+.+..+..+++.+
T Consensus 263 ~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~~~~~~ 336 (353)
T cd03811 263 AADLFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDGENGLLVPVG--DEAALAAAALALLDLLLDPELR 336 (353)
T ss_pred hCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCCCceEEECCC--CHHHHHHHHHHHHhccCChHHH
Confidence 45666532 3467899999999999997543 445566777788888753 45666 67777777888777
Q ss_pred HHHHH
Q psy1202 80 DTVGR 84 (136)
Q Consensus 80 ~~~~~ 84 (136)
+++++
T Consensus 337 ~~~~~ 341 (353)
T cd03811 337 ERLAA 341 (353)
T ss_pred HHHHH
Confidence 76666
No 91
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=97.04 E-value=0.00067 Score=50.35 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=26.7
Q ss_pred hHHHHHHHhCCCEEeecCCcChHHHHHH
Q psy1202 18 HSSMEAVYHGVPVVMMPGFSDQHQNCKL 45 (136)
Q Consensus 18 ~s~~Eal~~g~P~i~~P~~~dq~~na~~ 45 (136)
+|++|+++.|+|+|++|...+|..||+.
T Consensus 251 ~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 251 STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 8999999999999999999999999875
No 92
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.03 E-value=0.0019 Score=48.04 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=48.4
Q ss_pred ChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHHHHHHhcC
Q psy1202 16 GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRLSKQVRSL 92 (136)
Q Consensus 16 G~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 92 (136)
..++++||+++|+|+|+....+-. ..+.+ .|..+..+ +.+++.+++.++++|++.+.++.+.++....+
T Consensus 285 ~~~~~~Ea~a~G~pvI~~~~~~~~----e~~~~--~~~~~~~~--~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 353 (365)
T cd03809 285 FGLPVLEAMACGTPVIASNISSLP----EVAGD--AALYFDPL--DPEALAAAIERLLEDPALREELRERGLARAKR 353 (365)
T ss_pred CCCCHHHHhcCCCcEEecCCCCcc----ceecC--ceeeeCCC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 356799999999999997542211 11122 34444432 68999999999999999998888877665543
No 93
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=96.86 E-value=0.0022 Score=48.30 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=51.9
Q ss_pred CccEEEeC--CC-hhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh-HHHHHH
Q psy1202 7 NCKLFITH--GG-IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP-RYRDTV 82 (136)
Q Consensus 7 ~~~~~I~h--gG-~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~-~~~~~~ 82 (136)
.+++++.. -| ..+++||+++|+|+|+....+ ....+.+.+.|..++.+ +.+++.++|.++++++ ..++++
T Consensus 261 ~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~~~G~~~~~~--~~~~la~~i~~l~~~~~~~~~~~ 334 (351)
T cd03804 261 RARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDGVTGILFEEQ--TVESLAAAVERFEKNEDFDPQAI 334 (351)
T ss_pred hCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCCCCEEEeCCC--CHHHHHHHHHHHHhCcccCHHHH
Confidence 35555532 22 345799999999999986533 22334445678877643 6788999999999988 566666
Q ss_pred HHHHHHH
Q psy1202 83 GRLSKQV 89 (136)
Q Consensus 83 ~~~~~~~ 89 (136)
.+.++.+
T Consensus 335 ~~~~~~~ 341 (351)
T cd03804 335 RAHAERF 341 (351)
T ss_pred HHHHHhc
Confidence 6655443
No 94
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=96.82 E-value=0.0088 Score=45.55 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=49.9
Q ss_pred hhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHHHHHHh
Q psy1202 17 IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRLSKQVR 90 (136)
Q Consensus 17 ~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 90 (136)
..+++||+++|+|+|+.-..+ ....+.+.+.|..++. +.+++.++|.+++++++.++++.+.++...
T Consensus 313 g~~~lEAma~G~PvI~s~~~~----~~e~i~~~~~g~~~~~---~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~ 379 (392)
T cd03805 313 GIVPLEAMYAGKPVIACNSGG----PLETVVDGETGFLCEP---TPEEFAEAMLKLANDPDLADRMGAAGRKRV 379 (392)
T ss_pred CchHHHHHHcCCCEEEECCCC----cHHHhccCCceEEeCC---CHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 457899999999999975433 2233444556777653 689999999999999988888777666544
No 95
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=96.78 E-value=0.017 Score=50.01 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=56.4
Q ss_pred ccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHH
Q psy1202 8 CKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVG 83 (136)
Q Consensus 8 ~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 83 (136)
.++||.. |=..+++||+++|+|+|....-+ ....+....-|+.++.. +++.++++|.+++++++.++++.
T Consensus 572 ~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g~nGlLVdP~--D~eaLA~AL~~LL~Dpelr~~m~ 645 (1050)
T TIGR02468 572 KGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVLDNGLLVDPH--DQQAIADALLKLVADKQLWAECR 645 (1050)
T ss_pred CCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccCCcEEEECCC--CHHHHHHHHHHHhhCHHHHHHHH
Confidence 3577764 22467999999999999986533 12223333457777743 67899999999999999888888
Q ss_pred HHHHHHhc
Q psy1202 84 RLSKQVRS 91 (136)
Q Consensus 84 ~~~~~~~~ 91 (136)
+.+.....
T Consensus 646 ~~gr~~v~ 653 (1050)
T TIGR02468 646 QNGLKNIH 653 (1050)
T ss_pred HHHHHHHH
Confidence 77766554
No 96
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.70 E-value=0.014 Score=43.54 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=49.4
Q ss_pred hhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHHHHHHhcCCCCh
Q psy1202 17 IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRLSKQVRSLPYSN 96 (136)
Q Consensus 17 ~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~ 96 (136)
.++++||+++|+|+|+....+.. ..+.. .|..++.+ +.+.+++.+++++++.+.++.+.++....... .
T Consensus 282 ~~~~~EAma~G~PvI~s~~~~~~----e~~~~--~g~~~~~~----~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~f-s 350 (363)
T cd04955 282 NPSLLEAMAYGCPVLASDNPFNR----EVLGD--KAIYFKVG----DDLASLLEELEADPEEVSAMAKAARERIREKY-T 350 (363)
T ss_pred ChHHHHHHHcCCCEEEecCCccc----eeecC--CeeEecCc----hHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhC-C
Confidence 46799999999999998543221 11122 23344421 22999999999998877777776665544333 3
Q ss_pred HHHHHHHHHH
Q psy1202 97 LDQAVRWAEH 106 (136)
Q Consensus 97 ~~~~~~~ie~ 106 (136)
.+..+.....
T Consensus 351 ~~~~~~~~~~ 360 (363)
T cd04955 351 WEKIADQYEE 360 (363)
T ss_pred HHHHHHHHHH
Confidence 4455444443
No 97
>PHA01630 putative group 1 glycosyl transferase
Probab=96.56 E-value=0.034 Score=42.35 Aligned_cols=98 Identities=14% Similarity=0.172 Sum_probs=59.3
Q ss_pred CccEEEe--C--CChhHHHHHHHhCCCEEeecCCc--ChHHH---HHHH-----------HHcCceeEcCCCCCCHHHHH
Q psy1202 7 NCKLFIT--H--GGIHSSMEAVYHGVPVVMMPGFS--DQHQN---CKLM-----------EEKGMGLITPHETITGDILY 66 (136)
Q Consensus 7 ~~~~~I~--h--gG~~s~~Eal~~g~P~i~~P~~~--dq~~n---a~~~-----------~~~G~g~~l~~~~~~~~~l~ 66 (136)
.+|+++. . |...+++||+++|+|+|+...-+ |...+ ...+ ...++|..++. +.+++.
T Consensus 209 ~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~---~~~~~~ 285 (331)
T PHA01630 209 GCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDP---DIEDAY 285 (331)
T ss_pred hCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccCC---CHHHHH
Confidence 4566652 2 22567999999999999986433 22111 0000 00234555553 567888
Q ss_pred HHHHHHhcC---hHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy1202 67 ITIREVLNN---PRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAA 109 (136)
Q Consensus 67 ~~i~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~ 109 (136)
+.+.+++.+ ++.++.....++....+ + ..+.+++.++.+++
T Consensus 286 ~~ii~~l~~~~~~~~~~~~~~~~~~~~~~-f-s~~~ia~k~~~l~~ 329 (331)
T PHA01630 286 QKLLEALANWTPEKKKENLEGRAILYREN-Y-SYNAIAKMWEKILE 329 (331)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHh
Confidence 888888877 46666666666555543 3 46677777776664
No 98
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.54 E-value=0.012 Score=45.43 Aligned_cols=94 Identities=15% Similarity=0.193 Sum_probs=72.4
Q ss_pred CccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHHH
Q psy1202 7 NCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRLS 86 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 86 (136)
.+.+++|-.|.. .-||...|+|++.+-...++++ ..+.|.-+.+.. +.+.+.+++.+++++++..++++...
T Consensus 281 ~a~~iltDSGgi-qEEAp~lg~Pvl~lR~~TERPE----~v~agt~~lvg~---~~~~i~~~~~~ll~~~~~~~~m~~~~ 352 (383)
T COG0381 281 NAFLILTDSGGI-QEEAPSLGKPVLVLRDTTERPE----GVEAGTNILVGT---DEENILDAATELLEDEEFYERMSNAK 352 (383)
T ss_pred hceEEEecCCch-hhhHHhcCCcEEeeccCCCCcc----ceecCceEEeCc---cHHHHHHHHHHHhhChHHHHHHhccc
Confidence 456788888865 8899999999999977777776 345566666654 67899999999999999999999887
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHc
Q psy1202 87 KQVRSLPYSNLDQAVRWAEHVAAN 110 (136)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ie~~~~~ 110 (136)
.-+-+. .+.+++++.+......
T Consensus 353 npYgdg--~as~rIv~~l~~~~~~ 374 (383)
T COG0381 353 NPYGDG--NASERIVEILLNYFDS 374 (383)
T ss_pred CCCcCc--chHHHHHHHHHHHhhh
Confidence 666653 4667777777665543
No 99
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.49 E-value=0.013 Score=44.44 Aligned_cols=67 Identities=19% Similarity=0.323 Sum_probs=51.9
Q ss_pred hHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcC--hHHHHHHHHHHHHHhcC
Q psy1202 18 HSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNN--PRYRDTVGRLSKQVRSL 92 (136)
Q Consensus 18 ~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~~~~~~~~~ 92 (136)
+-+.|.+++|+|+|+.+ ....++.+++.+.|+.++ +.+++.+.+..+..+ .++++++++.++.++..
T Consensus 251 ~K~~~ymA~G~PVI~~~----~~~~~~~V~~~~~G~~v~----~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~g 319 (333)
T PRK09814 251 HKLSLYLAAGLPVIVWS----KAAIADFIVENGLGFVVD----SLEELPEIIDNITEEEYQEMVENVKKISKLLRNG 319 (333)
T ss_pred HHHHHHHHCCCCEEECC----CccHHHHHHhCCceEEeC----CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcc
Confidence 34778899999999864 356778889999999998 668899999886432 25677788888777763
No 100
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.43 E-value=0.07 Score=42.15 Aligned_cols=82 Identities=15% Similarity=0.294 Sum_probs=60.6
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeE-cCCCCCCHHHHHHHHHHHhcC-hHHHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLI-TPHETITGDILYITIREVLNN-PRYRDTVG 83 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~-l~~~~~~~~~l~~~i~~ll~~-~~~~~~~~ 83 (136)
.+++++|..==| +.+=|+..|+|++.+++ | ......+...|.... ++.++++.+++.+.+.++++| ++++++..
T Consensus 326 s~~dl~ig~RlH-a~I~a~~~gvP~i~i~Y--~-~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~~~~~l~ 401 (426)
T PRK10017 326 GACELTVGTRLH-SAIISMNFGTPAIAINY--E-HKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPALNARLA 401 (426)
T ss_pred hhCCEEEEecch-HHHHHHHcCCCEEEeee--h-HHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 345677754333 46778899999999987 2 455566688888755 777788889999999999988 46777777
Q ss_pred HHHHHHhc
Q psy1202 84 RLSKQVRS 91 (136)
Q Consensus 84 ~~~~~~~~ 91 (136)
+.....+.
T Consensus 402 ~~v~~~r~ 409 (426)
T PRK10017 402 EAVSRERQ 409 (426)
T ss_pred HHHHHHHH
Confidence 66666654
No 101
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=96.41 E-value=0.014 Score=44.70 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=54.9
Q ss_pred CccEEEeCCChhHHH-HHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHH
Q psy1202 7 NCKLFITHGGIHSSM-EAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRL 85 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~-Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 85 (136)
.++++|+..| | +. ||.+.|+|+|.+=-.++... ....|..+.+. .+.+++.+++++++.++....++...
T Consensus 258 ~a~~vvgdSs-G-I~eEa~~lg~P~v~iR~~geRqe----~r~~~~nvlv~---~~~~~I~~ai~~~l~~~~~~~~~~~~ 328 (346)
T PF02350_consen 258 NADLVVGDSS-G-IQEEAPSLGKPVVNIRDSGERQE----GRERGSNVLVG---TDPEAIIQAIEKALSDKDFYRKLKNR 328 (346)
T ss_dssp HESEEEESSH-H-HHHHGGGGT--EEECSSS-S-HH----HHHTTSEEEET---SSHHHHHHHHHHHHH-HHHHHHHHCS
T ss_pred cceEEEEcCc-c-HHHHHHHhCCeEEEecCCCCCHH----HHhhcceEEeC---CCHHHHHHHHHHHHhChHHHHhhccC
Confidence 5788999998 5 66 99999999999943333332 23456666654 37899999999999886666655543
Q ss_pred HHHHhcCCCChHHHHHHHH
Q psy1202 86 SKQVRSLPYSNLDQAVRWA 104 (136)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~i 104 (136)
..-+-+ .++.+++++.+
T Consensus 329 ~npYgd--G~as~rI~~~L 345 (346)
T PF02350_consen 329 PNPYGD--GNASERIVEIL 345 (346)
T ss_dssp --TT-S--S-HHHHHHHHH
T ss_pred CCCCCC--CcHHHHHHHhh
Confidence 334443 25666666655
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.37 E-value=0.047 Score=45.67 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=50.0
Q ss_pred CccEEEe---CCC-hhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHh----cChHH
Q psy1202 7 NCKLFIT---HGG-IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVL----NNPRY 78 (136)
Q Consensus 7 ~~~~~I~---hgG-~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll----~~~~~ 78 (136)
.+|+|+. +.| .++++||+++|+|+|....-+ ....+.+..-|+.++.+..+.+++.+++.+++ .++.+
T Consensus 591 aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l 666 (694)
T PRK15179 591 QFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGI 666 (694)
T ss_pred hcCEEEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHH
Confidence 3556553 334 788999999999999986532 33445555568888766656667777776655 45666
Q ss_pred HHHHHHHH
Q psy1202 79 RDTVGRLS 86 (136)
Q Consensus 79 ~~~~~~~~ 86 (136)
++++++..
T Consensus 667 ~~~ar~~a 674 (694)
T PRK15179 667 ARKAADWA 674 (694)
T ss_pred HHHHHHHH
Confidence 66655544
No 103
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=96.31 E-value=0.061 Score=41.46 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=41.5
Q ss_pred CccEEEeCC---C-hhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChH
Q psy1202 7 NCKLFITHG---G-IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPR 77 (136)
Q Consensus 7 ~~~~~I~hg---G-~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~ 77 (136)
.+|+++... | ..+++||+++|+|+|..+..+- ...+. .|.+..... +.+++.+++.++++++.
T Consensus 269 ~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~----~e~i~-~~~~~~~~~---~~~~l~~~l~~~l~~~~ 335 (398)
T cd03796 269 QGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI----PEVLP-PDMILLAEP---DVESIVRKLEEAISILR 335 (398)
T ss_pred hCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCc----hhhee-CCceeecCC---CHHHHHHHHHHHHhChh
Confidence 456665332 2 3589999999999999876432 12222 333444432 67999999999998754
No 104
>PLN00142 sucrose synthase
Probab=96.27 E-value=0.072 Score=45.24 Aligned_cols=95 Identities=14% Similarity=0.105 Sum_probs=62.6
Q ss_pred ccEEEeC---CC-hhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHH----HhcChHHH
Q psy1202 8 CKLFITH---GG-IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIRE----VLNNPRYR 79 (136)
Q Consensus 8 ~~~~I~h---gG-~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~----ll~~~~~~ 79 (136)
.++|+.. -| ..+++||+++|+|+|....-+ ....+.+..-|..++.. +.++++++|.+ +++|++.+
T Consensus 667 aDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV~dG~tG~LV~P~--D~eaLA~aI~~lLekLl~Dp~lr 740 (815)
T PLN00142 667 KGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEIIVDGVSGFHIDPY--HGDEAANKIADFFEKCKEDPSYW 740 (815)
T ss_pred CCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeCCC--CHHHHHHHHHHHHHHhcCCHHHH
Confidence 4677754 22 457999999999999976533 33344444568888754 56777777765 45799999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy1202 80 DTVGRLSKQVRSLPYSNLDQAVRWAEHVAA 109 (136)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~ 109 (136)
+++.+.+.....+.+ ..+..+..+..+..
T Consensus 741 ~~mg~~Ar~rv~e~F-SWe~~A~rll~L~~ 769 (815)
T PLN00142 741 NKISDAGLQRIYECY-TWKIYAERLLTLGG 769 (815)
T ss_pred HHHHHHHHHHHHHhC-CHHHHHHHHHHHHh
Confidence 888887755543323 35566666665553
No 105
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=96.27 E-value=0.047 Score=41.79 Aligned_cols=87 Identities=22% Similarity=0.177 Sum_probs=55.7
Q ss_pred CccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHHH
Q psy1202 7 NCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRLS 86 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 86 (136)
.++++|+-|| ....||+..|+|.|.. +.++-...-+.+.+.|+-.... +.+++.+.+++.+. .+.+.....
T Consensus 248 ~a~l~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~Gll~~~~----~~~ei~~~v~~~~~---~~~~~~~~~ 318 (335)
T PF04007_consen 248 YADLVIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEKGLLYHST----DPDEIVEYVRKNLG---KRKKIREKK 318 (335)
T ss_pred hcCEEEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHCCCeEecC----CHHHHHHHHHHhhh---cccchhhhh
Confidence 3678999887 4589999999999986 2333223446677888755444 67777775555442 222222211
Q ss_pred HHHhcCCCChHHHHHHHHHHHH
Q psy1202 87 KQVRSLPYSNLDQAVRWAEHVA 108 (136)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ie~~~ 108 (136)
. .++.+.+.+.|+.++
T Consensus 319 ----~--~d~~~~i~~~i~~~~ 334 (335)
T PF04007_consen 319 ----S--EDPTDLIIEEIEEYI 334 (335)
T ss_pred ----c--cCHHHHHHHHHHHhh
Confidence 1 267788888887764
No 106
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=96.22 E-value=0.077 Score=44.93 Aligned_cols=94 Identities=14% Similarity=0.111 Sum_probs=62.7
Q ss_pred ccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHh----cChHHH
Q psy1202 8 CKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVL----NNPRYR 79 (136)
Q Consensus 8 ~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll----~~~~~~ 79 (136)
.++|+.. +-..+++||+++|+|+|....-+ ....+.+..-|..++.. ++++++++|.+++ .|++.+
T Consensus 644 adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG----~~EiV~dg~tGfLVdp~--D~eaLA~aL~~ll~kll~dp~~~ 717 (784)
T TIGR02470 644 KGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG----PLEIIQDGVSGFHIDPY--HGEEAAEKIVDFFEKCDEDPSYW 717 (784)
T ss_pred CcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeCCC--CHHHHHHHHHHHHHHhcCCHHHH
Confidence 3566643 22467999999999999975432 33445555568888743 6788999888775 689888
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy1202 80 DTVGRLSKQVRSLPYSNLDQAVRWAEHVA 108 (136)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ie~~~ 108 (136)
+++.+.+.....+.+ ..+..+..+..+.
T Consensus 718 ~~ms~~a~~rV~~~F-SW~~~A~~ll~l~ 745 (784)
T TIGR02470 718 QKISQGGLQRIYEKY-TWKIYSERLLTLA 745 (784)
T ss_pred HHHHHHHHHHHHHhC-CHHHHHHHHHHHH
Confidence 888877665433323 3455555555554
No 107
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.12 E-value=0.07 Score=42.93 Aligned_cols=80 Identities=23% Similarity=0.204 Sum_probs=50.4
Q ss_pred ccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCC--CCC----HHHHHHHHHHHhcChH
Q psy1202 8 CKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHE--TIT----GDILYITIREVLNNPR 77 (136)
Q Consensus 8 ~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~--~~~----~~~l~~~i~~ll~~~~ 77 (136)
+++++.. |-..+++||+++|+|+|+....+ .+...++...-|..++.+ .-+ .+.++++|.++++ +.
T Consensus 393 adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-~~ 468 (500)
T TIGR02918 393 YELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN-SN 468 (500)
T ss_pred CCEEEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC-hH
Confidence 4555532 33578999999999999985431 123334444467666521 112 6789999999995 44
Q ss_pred HHHHHHHHHHHHhc
Q psy1202 78 YRDTVGRLSKQVRS 91 (136)
Q Consensus 78 ~~~~~~~~~~~~~~ 91 (136)
.++++.+.+.....
T Consensus 469 ~~~~~~~~a~~~a~ 482 (500)
T TIGR02918 469 DIDAFHEYSYQIAE 482 (500)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666665544
No 108
>PHA01633 putative glycosyl transferase group 1
Probab=96.01 E-value=0.063 Score=41.09 Aligned_cols=67 Identities=16% Similarity=0.042 Sum_probs=44.2
Q ss_pred CCccEEEeC----CChhHHHHHHHhCCCEEeecC------CcCh------HHHHHHHH--HcCceeEcCCCCCCHHHHHH
Q psy1202 6 RNCKLFITH----GGIHSSMEAVYHGVPVVMMPG------FSDQ------HQNCKLME--EKGMGLITPHETITGDILYI 67 (136)
Q Consensus 6 ~~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~------~~dq------~~na~~~~--~~G~g~~l~~~~~~~~~l~~ 67 (136)
..+|+|+.. |-..+++||+++|+|+|..-. .+++ ..+..... +.|.|+.++ ..+++++.+
T Consensus 222 ~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~--~~d~~~la~ 299 (335)
T PHA01633 222 GAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIH--KFQIEDMAN 299 (335)
T ss_pred HhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeec--CCCHHHHHH
Confidence 346777753 335679999999999999632 2232 22232222 356777766 458899999
Q ss_pred HHHHHhc
Q psy1202 68 TIREVLN 74 (136)
Q Consensus 68 ~i~~ll~ 74 (136)
+|.+++.
T Consensus 300 ai~~~~~ 306 (335)
T PHA01633 300 AIILAFE 306 (335)
T ss_pred HHHHHHh
Confidence 9999953
No 109
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=95.97 E-value=0.027 Score=45.55 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=53.0
Q ss_pred CccEEEeC---CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHH
Q psy1202 7 NCKLFITH---GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVG 83 (136)
Q Consensus 7 ~~~~~I~h---gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 83 (136)
.++++|.- -|.++.+||+++|+|+|- +.....++...=|.+++ +..++.+++..+|++++-..++.
T Consensus 428 ~arl~id~s~~eg~~~~ieAiS~GiPqIn-------yg~~~~V~d~~NG~li~----d~~~l~~al~~~L~~~~~wn~~~ 496 (519)
T TIGR03713 428 KLRLIIDLSKEPDLYTQISGISAGIPQIN-------KVETDYVEHNKNGYIID----DISELLKALDYYLDNLKNWNYSL 496 (519)
T ss_pred hheEEEECCCCCChHHHHHHHHcCCCeee-------cCCceeeEcCCCcEEeC----CHHHHHHHHHHHHhCHHHHHHHH
Confidence 45566643 367799999999999992 22234455555677775 78999999999999987777666
Q ss_pred HHHHHHhc
Q psy1202 84 RLSKQVRS 91 (136)
Q Consensus 84 ~~~~~~~~ 91 (136)
.-+-....
T Consensus 497 ~~sy~~~~ 504 (519)
T TIGR03713 497 AYSIKLID 504 (519)
T ss_pred HHHHHHHH
Confidence 66555444
No 110
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.89 E-value=0.12 Score=42.28 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=56.5
Q ss_pred CCccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHH---HHHhcChHH
Q psy1202 6 RNCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITI---REVLNNPRY 78 (136)
Q Consensus 6 ~~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i---~~ll~~~~~ 78 (136)
..+|+|+.. |-.++++||+++|+|+|....- .+...+.+...|..++.+ +...+.+++ ..+....+.
T Consensus 471 aaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG~nG~LVp~~--D~~aLa~ai~lA~aL~~ll~~ 544 (578)
T PRK15490 471 QKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEGVSGFILDDA--QTVNLDQACRYAEKLVNLWRS 544 (578)
T ss_pred HhCCEEEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccCCcEEEECCC--ChhhHHHHHHHHHHHHHHHHH
Confidence 356777743 3367899999999999998653 234555566678887754 334444443 333333333
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc
Q psy1202 79 RDTVGRLSKQVRSLPYSNLDQAVRWAEHVAAN 110 (136)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~ 110 (136)
+..+.+.++......+ ..+..+...+.++..
T Consensus 545 ~~~mg~~ARe~V~e~F-S~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 545 RTGICQQTQSFLQERF-TVEHMVGTFVKTIAS 575 (578)
T ss_pred HHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHh
Confidence 3333344444333333 356666666666654
No 111
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.84 E-value=0.11 Score=42.81 Aligned_cols=83 Identities=8% Similarity=0.159 Sum_probs=53.8
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecCCc-ChHHHHHHHHHc--------------Cce-eEcC-CCCCCHHHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFS-DQHQNCKLMEEK--------------GMG-LITP-HETITGDILYIT 68 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~-dq~~na~~~~~~--------------G~g-~~l~-~~~~~~~~l~~~ 68 (136)
..+|+.+..+|.. ++|++..|+|++++=... =.+..++++.+. .+- ..+. .++.+++++.++
T Consensus 487 ~aaD~aLaaSGTa-TLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~ 565 (608)
T PRK01021 487 RECDCALAKCGTI-VLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAA 565 (608)
T ss_pred HhcCeeeecCCHH-HHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHH
Confidence 4578889999975 899999999999984322 234456666551 111 2221 346789999999
Q ss_pred HHHHhcChHHHHHHHHHHHHHh
Q psy1202 69 IREVLNNPRYRDTVGRLSKQVR 90 (136)
Q Consensus 69 i~~ll~~~~~~~~~~~~~~~~~ 90 (136)
+ +++.|++.++++.+--+.++
T Consensus 566 l-~lL~d~~~r~~~~~~l~~lr 586 (608)
T PRK01021 566 L-DILKTSQSKEKQKDACRDLY 586 (608)
T ss_pred H-HHhcCHHHHHHHHHHHHHHH
Confidence 7 88888755555544333333
No 112
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=95.76 E-value=0.076 Score=42.05 Aligned_cols=97 Identities=11% Similarity=0.134 Sum_probs=58.4
Q ss_pred CCccEEEeC----CChhHHHHHHHhCCCEEeecCCc--ChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhc----C
Q psy1202 6 RNCKLFITH----GGIHSSMEAVYHGVPVVMMPGFS--DQHQNCKLMEEKGMGLITPHETITGDILYITIREVLN----N 75 (136)
Q Consensus 6 ~~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~--dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~----~ 75 (136)
..+|+++.. |-..+.+||+++|+|+|+...-+ |...+...-...+.|..++.. +++++.++|.+++. +
T Consensus 364 ~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~--d~~~la~~i~~~l~~~~~~ 441 (473)
T TIGR02095 364 AGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEY--DPGALLAALSRALRLYRQD 441 (473)
T ss_pred HhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCC--CHHHHHHHHHHHHHHHhcC
Confidence 356776643 22357899999999999875432 211110000122677777643 67899999999887 7
Q ss_pred hHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy1202 76 PRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVA 108 (136)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~ 108 (136)
++.++++.+.+. .+.. +.++.++..+.+.
T Consensus 442 ~~~~~~~~~~~~---~~~f-sw~~~a~~~~~~Y 470 (473)
T TIGR02095 442 PSLWEALQKNAM---SQDF-SWDKSAKQYVELY 470 (473)
T ss_pred HHHHHHHHHHHh---ccCC-CcHHHHHHHHHHH
Confidence 777777666542 2223 3555555555443
No 113
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=95.75 E-value=0.037 Score=43.62 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=54.2
Q ss_pred CCccEEEeC----CChhHHHHHHHhCCCEEeecCCc--ChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhc---Ch
Q psy1202 6 RNCKLFITH----GGIHSSMEAVYHGVPVVMMPGFS--DQHQNCKLMEEKGMGLITPHETITGDILYITIREVLN---NP 76 (136)
Q Consensus 6 ~~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~--dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~---~~ 76 (136)
..+|+++.. +...+.+||+++|+|+|+...-+ |...+.....+.|.|..++.. +.+++.+++.+++. ++
T Consensus 369 ~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~--~~~~l~~~i~~~l~~~~~~ 446 (476)
T cd03791 369 AGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGY--NADALLAALRRALALYRDP 446 (476)
T ss_pred HhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCC--CHHHHHHHHHHHHHHHcCH
Confidence 346676643 22356899999999999875432 211111111134578887743 67899999999875 44
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy1202 77 RYRDTVGRLSKQVRSLPYSNLDQAVRWAEHV 107 (136)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~ 107 (136)
+.++++.+.+ ..... ..+..+.....+
T Consensus 447 ~~~~~~~~~~---~~~~f-sw~~~a~~~~~~ 473 (476)
T cd03791 447 EAWRKLQRNA---MAQDF-SWDRSAKEYLEL 473 (476)
T ss_pred HHHHHHHHHH---hccCC-ChHHHHHHHHHH
Confidence 4444444333 23222 344544444433
No 114
>PLN02275 transferase, transferring glycosyl groups
Probab=95.67 E-value=0.044 Score=42.07 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=42.8
Q ss_pred CCccEEEe----C---CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHh
Q psy1202 6 RNCKLFIT----H---GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVL 73 (136)
Q Consensus 6 ~~~~~~I~----h---gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll 73 (136)
..+|+++. . |=.++++||+++|+|+|....- .+...+.+.+.|..++ +.+++.++|.+++
T Consensus 305 ~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g~~eiv~~g~~G~lv~----~~~~la~~i~~l~ 371 (371)
T PLN02275 305 GSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIGELVKDGKNGLLFS----SSSELADQLLELL 371 (371)
T ss_pred HhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCC----ChHHHccCCCCeEEEC----CHHHHHHHHHHhC
Confidence 35677763 1 1246799999999999997532 2455566666788886 5788999988774
No 115
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=95.58 E-value=0.011 Score=38.22 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=32.7
Q ss_pred ChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcC
Q psy1202 16 GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNN 75 (136)
Q Consensus 16 G~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~ 75 (136)
-.+++.|++++|+|+|+.+. .........+.+..+.. +++++.+++.++++|
T Consensus 84 ~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~~~~~~~~~---~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 84 FPNKLLEAMAAGKPVIASDN-----GAEGIVEEDGCGVLVAN---DPEELAEAIERLLND 135 (135)
T ss_dssp C-HHHHHHHCTT--EEEEHH-----HCHCHS---SEEEE-TT----HHHHHHHHHHHHH-
T ss_pred CcHHHHHHHHhCCCEEECCc-----chhhheeecCCeEEECC---CHHHHHHHHHHHhcC
Confidence 35889999999999999864 12223333577766632 789999999999865
No 116
>PLN02846 digalactosyldiacylglycerol synthase
Probab=95.45 E-value=0.15 Score=40.71 Aligned_cols=90 Identities=14% Similarity=0.046 Sum_probs=58.0
Q ss_pred CccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHH
Q psy1202 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTV 82 (136)
Q Consensus 7 ~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~ 82 (136)
..|+|+.. +-.++++||+++|+|+|+....+. ..+.+.+-|...+ +.+++.+++.+++.++. .+.
T Consensus 300 ~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~-----~~v~~~~ng~~~~----~~~~~a~ai~~~l~~~~-~~~- 368 (462)
T PLN02846 300 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-----EFFKQFPNCRTYD----DGKGFVRATLKALAEEP-APL- 368 (462)
T ss_pred hCCEEEECCCcccchHHHHHHHHcCCcEEEecCCCc-----ceeecCCceEecC----CHHHHHHHHHHHHccCc-hhH-
Confidence 45777765 446788999999999999854332 4444455565554 68899999999997542 111
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHcCC
Q psy1202 83 GRLSKQVRSLPYSNLDQAVRWAEHVAANKG 112 (136)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ie~~~~~~~ 112 (136)
...+.. . -+.+.+++.+..+.+...
T Consensus 369 ~~~a~~--~---~SWe~~~~~l~~~~~~~~ 393 (462)
T PLN02846 369 TDAQRH--E---LSWEAATERFLRVADLDL 393 (462)
T ss_pred HHHHHH--h---CCHHHHHHHHHHHhccCC
Confidence 111111 1 356777777777766543
No 117
>PLN02949 transferase, transferring glycosyl groups
Probab=95.44 E-value=0.084 Score=42.10 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=42.6
Q ss_pred hHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhc-ChHHHHHHHHHHHHHhc
Q psy1202 18 HSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLN-NPRYRDTVGRLSKQVRS 91 (136)
Q Consensus 18 ~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~ 91 (136)
.++.||+++|+|+|....-+--.+...--.....|...+ +.++++++|.++++ +++.++++.+.++....
T Consensus 369 ivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~----~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~ 439 (463)
T PLN02949 369 ISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT----TVEEYADAILEVLRMRETERLEIAAAARKRAN 439 (463)
T ss_pred hHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccCC----CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 469999999999999854331000000000011344443 78999999999998 46666666655554443
No 118
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=95.44 E-value=0.029 Score=43.26 Aligned_cols=65 Identities=17% Similarity=0.307 Sum_probs=43.0
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeE-cCCCCCCHHHHHHHHHHHhcChHHHHHH
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLI-TPHETITGDILYITIREVLNNPRYRDTV 82 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~-l~~~~~~~~~l~~~i~~ll~~~~~~~~~ 82 (136)
..++++|+-++.+ +.||.+.|+|+|.+- +.. ...+.|..+. +. .+++++.+++.+++ +++++++.
T Consensus 280 ~~a~~vitdSSgg-i~EA~~lg~Pvv~l~---~R~----e~~~~g~nvl~vg---~~~~~I~~a~~~~~-~~~~~~~~ 345 (365)
T TIGR03568 280 KNADAVIGNSSSG-IIEAPSFGVPTINIG---TRQ----KGRLRADSVIDVD---PDKEEIVKAIEKLL-DPAFKKSL 345 (365)
T ss_pred HhCCEEEEcChhH-HHhhhhcCCCEEeec---CCc----hhhhhcCeEEEeC---CCHHHHHHHHHHHh-ChHHHHHH
Confidence 3578899988655 599999999999873 211 1223354434 43 26799999999955 44544443
No 119
>PRK00654 glgA glycogen synthase; Provisional
Probab=95.32 E-value=0.085 Score=41.83 Aligned_cols=97 Identities=11% Similarity=0.129 Sum_probs=56.6
Q ss_pred CCccEEEeC----CChhHHHHHHHhCCCEEeecCCc--ChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhc---Ch
Q psy1202 6 RNCKLFITH----GGIHSSMEAVYHGVPVVMMPGFS--DQHQNCKLMEEKGMGLITPHETITGDILYITIREVLN---NP 76 (136)
Q Consensus 6 ~~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~--dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~---~~ 76 (136)
..+|+++.. |-..+.+||+++|+|+|+...-+ |...+...-.+.+-|..++.+ +++++.++|.++++ ++
T Consensus 355 ~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~--d~~~la~~i~~~l~~~~~~ 432 (466)
T PRK00654 355 AGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDF--NAEDLLRALRRALELYRQP 432 (466)
T ss_pred hhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCC--CHHHHHHHHHHHHHHhcCH
Confidence 456777743 22357999999999999874422 211111000223668777743 67899999999876 55
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy1202 77 RYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVA 108 (136)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~ 108 (136)
+.+.++.+.+. .... +.+..+...+.+.
T Consensus 433 ~~~~~~~~~~~---~~~f-sw~~~a~~~~~lY 460 (466)
T PRK00654 433 PLWRALQRQAM---AQDF-SWDKSAEEYLELY 460 (466)
T ss_pred HHHHHHHHHHh---ccCC-ChHHHHHHHHHHH
Confidence 55555544332 2223 3556665555544
No 120
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=95.20 E-value=0.14 Score=39.74 Aligned_cols=84 Identities=21% Similarity=0.270 Sum_probs=57.1
Q ss_pred CccEEEeCCChhHHHHHHHhCCCEEeecCC-cChHHHHHHHHHcCc---e-eEc--------CCCCCCHHHHHHHHHHHh
Q psy1202 7 NCKLFITHGGIHSSMEAVYHGVPVVMMPGF-SDQHQNCKLMEEKGM---G-LIT--------PHETITGDILYITIREVL 73 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~-~dq~~na~~~~~~G~---g-~~l--------~~~~~~~~~l~~~i~~ll 73 (136)
.+|+.+.-+|.- ++|++..|+|++++=-. .=.+..++++.+... . +.+ -.++.+++.+.+.+.+++
T Consensus 260 ~ad~al~~SGTa-TLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll 338 (373)
T PF02684_consen 260 AADAALAASGTA-TLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELL 338 (373)
T ss_pred hCcchhhcCCHH-HHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHh
Confidence 567777777864 89999999999998332 234556777765331 1 111 144578999999999999
Q ss_pred cChHHHHHHHHHHHHHhc
Q psy1202 74 NNPRYRDTVGRLSKQVRS 91 (136)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~ 91 (136)
.|++.++......+.+..
T Consensus 339 ~~~~~~~~~~~~~~~~~~ 356 (373)
T PF02684_consen 339 ENPEKRKKQKELFREIRQ 356 (373)
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 998766555555544444
No 121
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=94.90 E-value=0.28 Score=37.62 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=33.3
Q ss_pred hhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 17 IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 17 ~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
.+.+.|++++|+|+|..+.. ......+.+..... +.+++.++|.+++.++
T Consensus 292 P~Kl~EylA~G~PVVat~~~-------~~~~~~~~~~~~~~---d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 292 PLKLFEYLAAGKPVVATPLP-------EVRRYEDEVVLIAD---DPEEFVAAIEKALLED 341 (373)
T ss_pred cchHHHHhccCCCEEecCcH-------HHHhhcCcEEEeCC---CHHHHHHHHHHHHhcC
Confidence 35689999999999988641 11222232333332 7899999999976543
No 122
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=94.61 E-value=0.25 Score=38.37 Aligned_cols=99 Identities=16% Similarity=0.154 Sum_probs=65.9
Q ss_pred CccEEEeCCChhHHHHHHHhCCCEEeecCCc-ChHHHHHHHHHcCce----eEcC--------CCCCCHHHHHHHHHHHh
Q psy1202 7 NCKLFITHGGIHSSMEAVYHGVPVVMMPGFS-DQHQNCKLMEEKGMG----LITP--------HETITGDILYITIREVL 73 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~-dq~~na~~~~~~G~g----~~l~--------~~~~~~~~l~~~i~~ll 73 (136)
.+|+.+..+|.. ++|++.+|+|+++.--.. =.+..+++..+.... +.++ .+..+++.+.+++..++
T Consensus 264 ~aD~al~aSGT~-tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll 342 (381)
T COG0763 264 AADAALAASGTA-TLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELL 342 (381)
T ss_pred HhhHHHHhccHH-HHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHh
Confidence 466667777865 899999999999984332 223455555553311 1111 23467899999999999
Q ss_pred cCh----HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy1202 74 NNP----RYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVA 108 (136)
Q Consensus 74 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~ 108 (136)
.|+ .+.+...++...+... .+.+.+++.+-.++
T Consensus 343 ~~~~~~~~~~~~~~~l~~~l~~~--~~~e~aA~~vl~~~ 379 (381)
T COG0763 343 LNGDRREALKEKFRELHQYLRED--PASEIAAQAVLELL 379 (381)
T ss_pred cChHhHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHh
Confidence 887 5666666676666653 36777777776554
No 123
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=94.43 E-value=0.14 Score=40.13 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=40.1
Q ss_pred hHHHHHHHhCCCEEeecCCcChHHHHHHHH---HcCceeEcCCCCCCHHHHHHHHHHHhcCh-HHHHHHHHH
Q psy1202 18 HSSMEAVYHGVPVVMMPGFSDQHQNCKLME---EKGMGLITPHETITGDILYITIREVLNNP-RYRDTVGRL 85 (136)
Q Consensus 18 ~s~~Eal~~g~P~i~~P~~~dq~~na~~~~---~~G~g~~l~~~~~~~~~l~~~i~~ll~~~-~~~~~~~~~ 85 (136)
.++.||+++|+|+|+...-+.-. ..+. ....|.... ++++++++|.++++++ ..++.+.+-
T Consensus 339 i~~lEAMa~G~pvIa~~~ggp~~---~iv~~~~~g~~G~l~~----d~~~la~ai~~ll~~~~~~~~~~~~~ 403 (419)
T cd03806 339 IGVVEYMAAGLIPLAHASGGPLL---DIVVPWDGGPTGFLAS----TAEEYAEAIEKILSLSEEERLRIRRA 403 (419)
T ss_pred cHHHHHHHcCCcEEEEcCCCCch---heeeccCCCCceEEeC----CHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 56899999999999875322211 1122 344666654 7899999999999865 344444333
No 124
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=94.30 E-value=0.22 Score=36.73 Aligned_cols=52 Identities=15% Similarity=0.131 Sum_probs=37.6
Q ss_pred hhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 17 IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 17 ~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
..+++||+++|+|+|+....+ ....+.+...|..++ ..+++.+++.+++..+
T Consensus 258 ~~~~lEAma~G~PvI~~~~~~----~~e~i~~~~~g~l~~----~~~~l~~~l~~l~~~~ 309 (335)
T cd03802 258 GLVMIEAMACGTPVIAFRRGA----VPEVVEDGVTGFLVD----SVEELAAAVARADRLD 309 (335)
T ss_pred chHHHHHHhcCCCEEEeCCCC----chhheeCCCcEEEeC----CHHHHHHHHHHHhccH
Confidence 567999999999999986532 223333334677776 3899999999987543
No 125
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=94.25 E-value=0.58 Score=37.33 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=55.0
Q ss_pred CCccEEEeC---CC-hhHHHHHHHhCCC----EEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh-
Q psy1202 6 RNCKLFITH---GG-IHSSMEAVYHGVP----VVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP- 76 (136)
Q Consensus 6 ~~~~~~I~h---gG-~~s~~Eal~~g~P----~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~- 76 (136)
..+|+++.. -| ..+..|++++|+| +|+.-..+.... + +-|+.+++. +.+.++++|.++++.+
T Consensus 354 ~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~----l---~~gllVnP~--d~~~lA~aI~~aL~~~~ 424 (456)
T TIGR02400 354 RAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQE----L---NGALLVNPY--DIDGMADAIARALTMPL 424 (456)
T ss_pred HhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHH----h---CCcEEECCC--CHHHHHHHHHHHHcCCH
Confidence 456777643 25 4567899999999 777765543322 2 246667643 6799999999999853
Q ss_pred -HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy1202 77 -RYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVA 108 (136)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~ 108 (136)
+.+++..++.+.+.. . .+..|.+.++
T Consensus 425 ~er~~r~~~~~~~v~~---~---~~~~W~~~~l 451 (456)
T TIGR02400 425 EEREERHRAMMDKLRK---N---DVQRWREDFL 451 (456)
T ss_pred HHHHHHHHHHHHHHhh---C---CHHHHHHHHH
Confidence 344444444444433 2 3456666554
No 126
>PRK14099 glycogen synthase; Provisional
Probab=94.08 E-value=0.31 Score=39.06 Aligned_cols=96 Identities=13% Similarity=0.063 Sum_probs=56.3
Q ss_pred CccEEEeC----CChhHHHHHHHhCCCEEeecCCc--ChHHHHHHH-H--HcCceeEcCCCCCCHHHHHHHHHH---Hhc
Q psy1202 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMPGFS--DQHQNCKLM-E--EKGMGLITPHETITGDILYITIRE---VLN 74 (136)
Q Consensus 7 ~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~--dq~~na~~~-~--~~G~g~~l~~~~~~~~~l~~~i~~---ll~ 74 (136)
.+|+|+.. |-..+.+||+++|+|.|+...-+ |........ + ..+-|..++.. +++++.++|.+ +++
T Consensus 369 ~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~--d~~~La~ai~~a~~l~~ 446 (485)
T PRK14099 369 GADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPV--TADALAAALRKTAALFA 446 (485)
T ss_pred cCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCC--CHHHHHHHHHHHHHHhc
Confidence 46777642 22456899999998777654322 222111101 1 11467777743 68899999997 677
Q ss_pred ChHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy1202 75 NPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVA 108 (136)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~ 108 (136)
|++.++++.+.+.. +.. +.++.+...+.+.
T Consensus 447 d~~~~~~l~~~~~~---~~f-Sw~~~a~~y~~lY 476 (485)
T PRK14099 447 DPVAWRRLQRNGMT---TDV-SWRNPAQHYAALY 476 (485)
T ss_pred CHHHHHHHHHHhhh---hcC-ChHHHHHHHHHHH
Confidence 88888777776532 222 3445555544443
No 127
>PLN02501 digalactosyldiacylglycerol synthase
Probab=94.05 E-value=0.14 Score=42.93 Aligned_cols=87 Identities=18% Similarity=0.085 Sum_probs=53.8
Q ss_pred CCccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHH
Q psy1202 6 RNCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDT 81 (136)
Q Consensus 6 ~~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~ 81 (136)
..+|+||.. |=..+++||+++|+|+|+....++.. +...+.|...+ +.+++.+++.+++.++..+..
T Consensus 617 asaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g~nGll~~----D~EafAeAI~~LLsd~~~rl~ 687 (794)
T PLN02501 617 HGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSFPNCLTYK----TSEDFVAKVKEALANEPQPLT 687 (794)
T ss_pred HhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----EeecCCeEecC----CHHHHHHHHHHHHhCchhhhH
Confidence 345676643 23678899999999999986655321 22223333332 689999999999988764443
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy1202 82 VGRLSKQVRSLPYSNLDQAVRWAEHVA 108 (136)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ie~~~ 108 (136)
+.+.. . -..+.+++.+....
T Consensus 688 ~~a~~----~---~SWeAaadrLle~~ 707 (794)
T PLN02501 688 PEQRY----N---LSWEAATQRFMEYS 707 (794)
T ss_pred HHHHh----h---CCHHHHHHHHHHhh
Confidence 33211 1 24555555555444
No 128
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=93.29 E-value=0.21 Score=38.22 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=56.3
Q ss_pred CccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHH----HHHHcCceeEcCCCCCCHHHHHHHHHHHhcChH-HHHH
Q psy1202 7 NCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCK----LMEEKGMGLITPHETITGDILYITIREVLNNPR-YRDT 81 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~----~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~-~~~~ 81 (136)
.+|++||--.. .+.|.+..++|+|......|.+...+ -..+...|..+. +.++|.++|+.++.++. ++++
T Consensus 269 ~aDiLITDySS-i~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~----~~~eL~~~i~~~~~~~~~~~~~ 343 (369)
T PF04464_consen 269 AADILITDYSS-IIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVY----NFEELIEAIENIIENPDEYKEK 343 (369)
T ss_dssp T-SEEEESS-T-HHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EES----SHHHHHHHHTTHHHHHHHTHHH
T ss_pred hcCEEEEechh-HHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeC----CHHHHHHHHHhhhhCCHHHHHH
Confidence 57889998754 68999999999999876555442210 011223333333 67999999999887653 4555
Q ss_pred HHHHHHHHhc-CCCChHHHHHHHHH
Q psy1202 82 VGRLSKQVRS-LPYSNLDQAVRWAE 105 (136)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~~ie 105 (136)
..+..+.+.. ..+++.++++++|.
T Consensus 344 ~~~~~~~~~~~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 344 REKFRDKFFKYNDGNSSERIVNYIF 368 (369)
T ss_dssp HHHHHHHHSTT--S-HHHHHHHHHH
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHh
Confidence 6666666644 23467788887765
No 129
>PRK10125 putative glycosyl transferase; Provisional
Probab=93.14 E-value=0.82 Score=35.75 Aligned_cols=56 Identities=18% Similarity=0.060 Sum_probs=37.2
Q ss_pred CccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHH
Q psy1202 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITI 69 (136)
Q Consensus 7 ~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i 69 (136)
.+|+||.. |-..+++||+++|+|+|....-+- .+ +.+.+-|..++.+ +.++|++.+
T Consensus 306 ~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~-~E----iv~~~~G~lv~~~--d~~~La~~~ 365 (405)
T PRK10125 306 QMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAA-RE----VLQKSGGKTVSEE--EVLQLAQLS 365 (405)
T ss_pred hCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCCh-HH----hEeCCcEEEECCC--CHHHHHhcc
Confidence 35666643 346789999999999999976542 22 2223468888754 567777643
No 130
>KOG0853|consensus
Probab=92.35 E-value=0.17 Score=40.56 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=53.6
Q ss_pred hHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHHHHHHhcCCCChH
Q psy1202 18 HSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRLSKQVRSLPYSNL 97 (136)
Q Consensus 18 ~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 97 (136)
-+++||+++|+|++..---| =+.-+...--|...+++.-....+++++.++.+|++++.++.+....-...-+. .
T Consensus 380 iv~IEAMa~glPvvAt~~GG----P~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~fs-~ 454 (495)
T KOG0853|consen 380 IVPIEAMACGLPVVATNNGG----PAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKNGLKRVKEMFS-W 454 (495)
T ss_pred ceeHHHHhcCCCEEEecCCC----ceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh-H
Confidence 46899999999999973211 012222233566676532223479999999999999999998776554443221 2
Q ss_pred HHHHHHHHHHH
Q psy1202 98 DQAVRWAEHVA 108 (136)
Q Consensus 98 ~~~~~~ie~~~ 108 (136)
......|..++
T Consensus 455 ~~~~~ri~~~~ 465 (495)
T KOG0853|consen 455 QHYSERIASVL 465 (495)
T ss_pred HHHHHHHHHHh
Confidence 34444444444
No 131
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=92.19 E-value=0.9 Score=36.17 Aligned_cols=76 Identities=14% Similarity=0.058 Sum_probs=46.2
Q ss_pred CCccEEEe---CCC-hhHHHHHHHhCCC----EEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh-
Q psy1202 6 RNCKLFIT---HGG-IHSSMEAVYHGVP----VVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP- 76 (136)
Q Consensus 6 ~~~~~~I~---hgG-~~s~~Eal~~g~P----~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~- 76 (136)
..+|+|+. .-| ..+++||+++|+| +|+.-..+-... ..-|..++.. +.++++++|.++++++
T Consensus 359 ~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~-------~~~g~lv~p~--d~~~la~ai~~~l~~~~ 429 (460)
T cd03788 359 RAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE-------LSGALLVNPY--DIDEVADAIHRALTMPL 429 (460)
T ss_pred HhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh-------cCCCEEECCC--CHHHHHHHHHHHHcCCH
Confidence 34566663 234 4567999999999 655533332111 1335666643 6799999999999865
Q ss_pred HHHHHHHHHHHHHh
Q psy1202 77 RYRDTVGRLSKQVR 90 (136)
Q Consensus 77 ~~~~~~~~~~~~~~ 90 (136)
+.+++..+..+...
T Consensus 430 ~e~~~~~~~~~~~v 443 (460)
T cd03788 430 EERRERHRKLREYV 443 (460)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555444444443
No 132
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=91.93 E-value=3.4 Score=29.49 Aligned_cols=61 Identities=23% Similarity=0.360 Sum_probs=40.4
Q ss_pred hHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHH
Q psy1202 18 HSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGR 84 (136)
Q Consensus 18 ~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 84 (136)
.++.|++++|+|+|..... .....+...+.|...... +.+++.+++..++++++.++...+
T Consensus 291 ~~~~Ea~a~g~pvi~~~~~----~~~e~~~~~~~g~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~ 351 (381)
T COG0438 291 LVLLEAMAAGTPVIASDVG----GIPEVVEDGETGLLVPPG--DVEELADALEQLLEDPELREELGE 351 (381)
T ss_pred HHHHHHHhcCCcEEECCCC----ChHHHhcCCCceEecCCC--CHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4479999999999888643 122222222235433322 578999999999998866666665
No 133
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=1.8 Score=35.56 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=47.6
Q ss_pred CCCccEEE---eCCChhHHHHHHHhCCCEEeecCCcChHH--HH-HHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHH
Q psy1202 5 HRNCKLFI---THGGIHSSMEAVYHGVPVVMMPGFSDQHQ--NC-KLMEEKGMGLITPHETITGDILYITIREVLNNPRY 78 (136)
Q Consensus 5 h~~~~~~I---~hgG~~s~~Eal~~g~P~i~~P~~~dq~~--na-~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~ 78 (136)
+.-+|+|. ..||+.|..|++..|+|++..+ |+|+. |+ ..+...|+-..+.. ++++-.+.--.+-.|.+.
T Consensus 506 ~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~---s~~dYV~~av~~g~dral 580 (620)
T COG3914 506 YGIADLVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVAD---SRADYVEKAVAFGSDRAL 580 (620)
T ss_pred hchhheeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcC---CHHHHHHHHHHhcccHHH
Confidence 34456655 6799999999999999999986 77754 43 34455787766653 444433333344455544
Q ss_pred HHHHH
Q psy1202 79 RDTVG 83 (136)
Q Consensus 79 ~~~~~ 83 (136)
+++.+
T Consensus 581 ~q~~r 585 (620)
T COG3914 581 RQQVR 585 (620)
T ss_pred HHhhH
Confidence 44443
No 134
>PRK14098 glycogen synthase; Provisional
Probab=91.49 E-value=0.83 Score=36.69 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=54.1
Q ss_pred CCccEEEeCC----ChhHHHHHHHhCCCEEeecCCc--ChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHh---cCh
Q psy1202 6 RNCKLFITHG----GIHSSMEAVYHGVPVVMMPGFS--DQHQNCKLMEEKGMGLITPHETITGDILYITIREVL---NNP 76 (136)
Q Consensus 6 ~~~~~~I~hg----G~~s~~Eal~~g~P~i~~P~~~--dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll---~~~ 76 (136)
..+|+|+..+ -..+.+||+.+|+|.|+...-+ |.... ...+.+-|..++. .+++++.++|.+++ +++
T Consensus 380 a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~~~G~l~~~--~d~~~la~ai~~~l~~~~~~ 455 (489)
T PRK14098 380 AGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDKGSGFIFHD--YTPEALVAKLGEALALYHDE 455 (489)
T ss_pred HhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCCCceeEeCC--CCHHHHHHHHHHHHHHHcCH
Confidence 3566766432 2356899999999988875422 22110 0112356777763 36789999999865 566
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy1202 77 RYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVA 108 (136)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~ 108 (136)
+.++++.+.+ ..+.. +.+..+...+.+.
T Consensus 456 ~~~~~~~~~~---~~~~f-sw~~~a~~y~~lY 483 (489)
T PRK14098 456 ERWEELVLEA---MERDF-SWKNSAEEYAQLY 483 (489)
T ss_pred HHHHHHHHHH---hcCCC-ChHHHHHHHHHHH
Confidence 5555444322 22222 4555555555544
No 135
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.32 E-value=0.69 Score=34.28 Aligned_cols=54 Identities=19% Similarity=0.168 Sum_probs=40.0
Q ss_pred CccEEEeCCChhHHHHHHH------hCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 7 NCKLFITHGGIHSSMEAVY------HGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~------~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
.+|++|+-||-||++.++. .++|++.+.. -.+|... +++++++.+.+++++++.
T Consensus 35 ~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~-------------G~lGFL~---~~~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 35 NPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT-------------GHLGFYT---DWRPFEVDKLVIALAKDP 94 (265)
T ss_pred CCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC-------------CCceecc---cCCHHHHHHHHHHHHcCC
Confidence 5799999999999999975 4789888842 1234333 346788888888888653
No 136
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.23 E-value=2 Score=32.90 Aligned_cols=78 Identities=17% Similarity=0.151 Sum_probs=51.3
Q ss_pred HHHhCCCEEeecCCcChHH--HHHHHHH-cCceeEcCCCCCCHHHHHHHH-HHHhcChHHHHHHHHHHHHHhcCCCChHH
Q psy1202 23 AVYHGVPVVMMPGFSDQHQ--NCKLMEE-KGMGLITPHETITGDILYITI-REVLNNPRYRDTVGRLSKQVRSLPYSNLD 98 (136)
Q Consensus 23 al~~g~P~i~~P~~~dq~~--na~~~~~-~G~g~~l~~~~~~~~~l~~~i-~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (136)
++=.|+|+|.+|-.+-|+. .|.+=.. .|..+.+-.+ +......+ ++++.|+++.+..+....+=..++ +...
T Consensus 326 avGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~---~aq~a~~~~q~ll~dp~r~~air~nGqrRiGqa-Gaa~ 401 (412)
T COG4370 326 AVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP---EAQAAAQAVQELLGDPQRLTAIRHNGQRRIGQA-GAAR 401 (412)
T ss_pred hhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC---chhhHHHHHHHHhcChHHHHHHHhcchhhccCc-chHH
Confidence 4568999999999998854 5555544 6888887753 23334444 449999998888776555444443 3455
Q ss_pred HHHHHH
Q psy1202 99 QAVRWA 104 (136)
Q Consensus 99 ~~~~~i 104 (136)
++++.+
T Consensus 402 rIAe~l 407 (412)
T COG4370 402 RIAEEL 407 (412)
T ss_pred HHHHHH
Confidence 555544
No 137
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=91.03 E-value=0.36 Score=33.10 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=25.6
Q ss_pred CccEEEeCCC----hhHHHHHHHhCCCEEeecCCc
Q psy1202 7 NCKLFITHGG----IHSSMEAVYHGVPVVMMPGFS 37 (136)
Q Consensus 7 ~~~~~I~hgG----~~s~~Eal~~g~P~i~~P~~~ 37 (136)
.++++++... .+++.||+++|+|+|+.+..+
T Consensus 181 ~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 181 AADVFVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred cCCEEEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 4778887765 788999999999999987644
No 138
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.90 E-value=0.8 Score=34.68 Aligned_cols=54 Identities=24% Similarity=0.361 Sum_probs=40.5
Q ss_pred CccEEEeCCChhHHHHHHHh----CCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 7 NCKLFITHGGIHSSMEAVYH----GVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~----g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
.+|++|+-||=||++.++.. ++|++.+-. -.+|... +++.+++.+++++++++.
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~-------------G~lGFLt---~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLAPCGIPLLTINT-------------GHLGFLT---EAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeC-------------CCCcccc---cCCHHHHHHHHHHHHcCC
Confidence 47999999999999999764 789888832 1233333 346788999999998764
No 139
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=90.18 E-value=1.2 Score=33.51 Aligned_cols=54 Identities=24% Similarity=0.324 Sum_probs=39.3
Q ss_pred CccEEEeCCChhHHHHHHHh----CCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 7 NCKLFITHGGIHSSMEAVYH----GVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~----g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
.++++|+-||-||+++++.. ++|++.+.. -.+|... +.+.+++.+.|.+++++.
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~-------------G~lGFL~---~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLAPYGVPLIGINH-------------GRLGFIT---DIPLDDMQETLPPMLAGN 120 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcC-------------CCccccc---cCCHHHHHHHHHHHHcCC
Confidence 47899999999999999763 678888741 1134333 346788888999887653
No 140
>KOG4626|consensus
Probab=89.99 E-value=0.89 Score=37.91 Aligned_cols=67 Identities=19% Similarity=0.383 Sum_probs=46.9
Q ss_pred CChhHHHHHHHhCCCEEeecCCcCh-HHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHH
Q psy1202 15 GGIHSSMEAVYHGVPVVMMPGFSDQ-HQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGR 84 (136)
Q Consensus 15 gG~~s~~Eal~~g~P~i~~P~~~dq-~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 84 (136)
.|+.|-+|.+..|+|++.+|.-..- ..-+..+...|+|..+.. +.++-.+.--++-+|.++-++++.
T Consensus 846 nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak---~~eEY~~iaV~Latd~~~L~~lr~ 913 (966)
T KOG4626|consen 846 NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK---NREEYVQIAVRLATDKEYLKKLRA 913 (966)
T ss_pred CCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh---hHHHHHHHHHHhhcCHHHHHHHHH
Confidence 3678899999999999999964332 334555677899977664 566666666666677655555443
No 141
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.68 E-value=1.3 Score=33.29 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=39.1
Q ss_pred CccEEEeCCChhHHHHHHH----hCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 7 NCKLFITHGGIHSSMEAVY----HGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~----~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
.+|++|+-||-||++.++. .++|++.+-. -.+|... +++.+++.+++++++++.
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN~-------------G~lGFLt---~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAAEYDKFVLGIHA-------------GHLGFLT---DITVDEAEKFFQAFFQGE 121 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCcEEEEeC-------------CCcccCC---cCCHHHHHHHHHHHHcCC
Confidence 5799999999999998865 3779888732 1133332 346788889999988654
No 142
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=89.29 E-value=3.5 Score=34.07 Aligned_cols=78 Identities=14% Similarity=0.010 Sum_probs=43.6
Q ss_pred CCccEEEeC----CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHH-c-CceeEcCC-CC----CCHHHHHHHHHHHhc
Q psy1202 6 RNCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE-K-GMGLITPH-ET----ITGDILYITIREVLN 74 (136)
Q Consensus 6 ~~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~-~-G~g~~l~~-~~----~~~~~l~~~i~~ll~ 74 (136)
..+++++.. |-..+++||+++|+|+|....-+= ...+..+.. . ..|+.+.. .. .+.+.+.++|.++++
T Consensus 473 ~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf-~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m~~~~~ 551 (590)
T cd03793 473 RGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGF-GCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQYMYEFCQ 551 (590)
T ss_pred hhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcch-hhhhHHHhccCCCceEEEecCCccchHHHHHHHHHHHHHHhC
Confidence 456666652 324679999999999999865321 111122222 1 24555542 11 134678888888874
Q ss_pred ChHHHHHHHHH
Q psy1202 75 NPRYRDTVGRL 85 (136)
Q Consensus 75 ~~~~~~~~~~~ 85 (136)
. +.++++...
T Consensus 552 ~-~~r~~~~~r 561 (590)
T cd03793 552 L-SRRQRIIQR 561 (590)
T ss_pred C-cHHHHHHHH
Confidence 4 445544443
No 143
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.21 E-value=1.4 Score=33.16 Aligned_cols=54 Identities=20% Similarity=0.389 Sum_probs=40.0
Q ss_pred CccEEEeCCChhHHHHHHHh----CCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 7 NCKLFITHGGIHSSMEAVYH----GVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~----g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
.+|++|+-||=||++.++.. ++|++.+-. -.+|... +++++++.+++++++++.
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~-------------G~lGFLt---~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVGNSNIPILGINT-------------GRLGFLA---TVSKEEIEETIDELLNGD 121 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEec-------------CCCCccc---ccCHHHHHHHHHHHHcCC
Confidence 47899999999999998763 689888842 1134333 346788999999998654
No 144
>PLN02316 synthase/transferase
Probab=88.92 E-value=4.5 Score=35.72 Aligned_cols=101 Identities=10% Similarity=0.011 Sum_probs=58.2
Q ss_pred CCCccEEEeC----CChhHHHHHHHhCCCEEeecCCc--ChHHHH----HHHHH---cCceeEcCCCCCCHHHHHHHHHH
Q psy1202 5 HRNCKLFITH----GGIHSSMEAVYHGVPVVMMPGFS--DQHQNC----KLMEE---KGMGLITPHETITGDILYITIRE 71 (136)
Q Consensus 5 h~~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~--dq~~na----~~~~~---~G~g~~l~~~~~~~~~l~~~i~~ 71 (136)
...+|+|+.. +-..+.+||+.+|+|.|+...-+ |..... ...+. .+-|..++. .+++.+..+|.+
T Consensus 917 yaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~--~d~~aLa~AL~r 994 (1036)
T PLN02316 917 YAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDG--ADAAGVDYALNR 994 (1036)
T ss_pred HHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCC--CCHHHHHHHHHH
Confidence 3466777733 22456999999999988864432 222111 00011 245777773 377899999999
Q ss_pred HhcC-hHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy1202 72 VLNN-PRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVA 108 (136)
Q Consensus 72 ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~ 108 (136)
++.+ +..+....+.++....+.. +.+..+...+.+.
T Consensus 995 aL~~~~~~~~~~~~~~r~~m~~dF-SW~~~A~~Y~~LY 1031 (1036)
T PLN02316 995 AISAWYDGRDWFNSLCKRVMEQDW-SWNRPALDYMELY 1031 (1036)
T ss_pred HHhhhhhhHHHHHHHHHHHHHhhC-CHHHHHHHHHHHH
Confidence 9976 3444554555544433323 3555555555443
No 145
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.80 E-value=1.5 Score=33.30 Aligned_cols=54 Identities=20% Similarity=0.342 Sum_probs=40.9
Q ss_pred CccEEEeCCChhHHHHHHHh----CCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 7 NCKLFITHGGIHSSMEAVYH----GVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~----g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
.+|++|+-||-||++.++.. ++|++.+.. -.+|...+ ..++++.+++++++++.
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~-------------G~lGFL~~---~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELARAADVPVLGVNL-------------GHVGFLAE---AEAEDLDEAVERVVDRD 129 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhccCCCcEEEEec-------------CCCceecc---CCHHHHHHHHHHHHcCC
Confidence 47899999999999998754 789998853 12444443 36788999999998654
No 146
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.37 E-value=1.3 Score=33.36 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=40.5
Q ss_pred CccEEEeCCChhHHHHHHH----hCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 7 NCKLFITHGGIHSSMEAVY----HGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~----~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
.+|++|+-||=||++.++. .++|++.+-. -.+|...+ ++.+++.+++++++++.
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~-------------G~lGFL~~---~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIAPRAVPIIGINQ-------------GHLGFLTQ---IPREYMTDKLLPVLEGK 125 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhcccCCCEEEEec-------------CCCeEeec---cCHHHHHHHHHHHHcCC
Confidence 4799999999999999974 3789888842 11444443 46788999999998654
No 147
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=88.10 E-value=2.8 Score=33.41 Aligned_cols=68 Identities=19% Similarity=0.293 Sum_probs=43.8
Q ss_pred EEeCCC--hhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHH-HHHHHHHH
Q psy1202 11 FITHGG--IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRY-RDTVGRLS 86 (136)
Q Consensus 11 ~I~hgG--~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~-~~~~~~~~ 86 (136)
-|+||. ..++.||+..|+|++..=.... +...+.. |-++..+ +.+++.++|.++|++++. .+...+.+
T Consensus 353 din~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i~~---g~l~~~~--~~~~m~~~i~~lL~d~~~~~~~~~~q~ 423 (438)
T TIGR02919 353 DINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFIAS---ENIFEHN--EVDQLISKLKDLLNDPNQFRELLEQQR 423 (438)
T ss_pred EccccccHHHHHHHHHHcCCcEEEEecccC---CcccccC---CceecCC--CHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 456655 7889999999999999843211 1111222 4344432 679999999999999854 44444433
No 148
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.04 E-value=1.8 Score=32.15 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=39.7
Q ss_pred CCccEEEeCCChhHHHHHHHh-----CCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 6 RNCKLFITHGGIHSSMEAVYH-----GVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~-----g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
..+|++|+-||-||++.++.. .+|++.+...+ .+|... +++.+++.+.+.+++++.
T Consensus 38 ~~~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G------------~lGFL~---~~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 38 KNANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD------------QLGFYC---DFHIDDLDKMIQAITKEE 98 (264)
T ss_pred CCccEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC------------CCeEcc---cCCHHHHHHHHHHHHcCC
Confidence 357999999999999999864 56766663211 244443 346788888888888654
No 149
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=87.88 E-value=8.1 Score=33.20 Aligned_cols=77 Identities=17% Similarity=0.120 Sum_probs=46.8
Q ss_pred CCccEEEeC---CChh-HHHHHHHhCCC----EEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhc-Ch
Q psy1202 6 RNCKLFITH---GGIH-SSMEAVYHGVP----VVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLN-NP 76 (136)
Q Consensus 6 ~~~~~~I~h---gG~~-s~~Eal~~g~P----~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~-~~ 76 (136)
..+|+|+.. -|.| +.+|++++|+| +|+.-+.+.-.. + ...|+.+++. +.++++++|.++|+ ++
T Consensus 374 ~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~----l--~~~allVnP~--D~~~lA~AI~~aL~m~~ 445 (797)
T PLN03063 374 AITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQS----L--GAGALLVNPW--NITEVSSAIKEALNMSD 445 (797)
T ss_pred HhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCchhh----h--cCCeEEECCC--CHHHHHHHHHHHHhCCH
Confidence 346676644 3644 56899999999 444434332111 1 1257777743 77999999999998 55
Q ss_pred HHHHHH-HHHHHHHh
Q psy1202 77 RYRDTV-GRLSKQVR 90 (136)
Q Consensus 77 ~~~~~~-~~~~~~~~ 90 (136)
+.+++. .+..+...
T Consensus 446 ~er~~r~~~~~~~v~ 460 (797)
T PLN03063 446 EERETRHRHNFQYVK 460 (797)
T ss_pred HHHHHHHHHHHHhhh
Confidence 555443 33444333
No 150
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.88 E-value=2 Score=32.00 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=39.8
Q ss_pred CccEEEeCCChhHHHHHHH-hCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 7 NCKLFITHGGIHSSMEAVY-HGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~-~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
.+|++|+-||-||++-++. ...|++.+-. -.+|... +++.+++.+++++++++.
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~~~PilGIN~-------------G~lGFL~---~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRAKGPILGINM-------------GGLGFLT---EIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHcCCCEEEEEC-------------CCCccCc---ccCHHHHHHHHHHHHcCC
Confidence 5799999999999999987 3568877732 1234333 357789999999998763
No 151
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.86 E-value=1.8 Score=32.50 Aligned_cols=54 Identities=20% Similarity=0.310 Sum_probs=39.1
Q ss_pred CccEEEeCCChhHHHHHHH----hCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 7 NCKLFITHGGIHSSMEAVY----HGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~----~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
.+|++|+-||-||++.++. .++|++.+-. + .+|... +++++++.+++++++++.
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~-G------------~lGFl~---~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLARYDIKVIGINR-G------------NLGFLT---DLDPDNALQQLSDVLEGH 120 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCeEEEEEC-C------------CCCccc---ccCHHHHHHHHHHHHcCC
Confidence 4799999999999999974 3678888742 0 133333 345788999999998653
No 152
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.67 E-value=2.3 Score=31.32 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=39.5
Q ss_pred CCccEEEeCCChhHHHHHHH-hCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 6 RNCKLFITHGGIHSSMEAVY-HGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~-~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
..++++|+-||-||++.++. .++|++.+-. + .+|... +++.+++.+.++++++..
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~~~Pilgin~-G------------~lGfl~---~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKVGTPLVGFKA-G------------RLGFLS---SYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHcCCCEEEEeC-C------------CCcccc---ccCHHHHHHHHHHHHcCC
Confidence 36799999999999999875 5788887741 1 134333 346788888888887653
No 153
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.35 E-value=1.8 Score=32.24 Aligned_cols=53 Identities=19% Similarity=0.324 Sum_probs=38.1
Q ss_pred CccEEEeCCChhHHHHHHH----hCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcC
Q psy1202 7 NCKLFITHGGIHSSMEAVY----HGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNN 75 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~----~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~ 75 (136)
.+|++|+-||-||++.++. .++|++.+-. -.+|...+ ++++++.+.+.+++++
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~-------------G~lGFL~~---~~~~~~~~~l~~~~~~ 98 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLAKYDIPLIGINR-------------GNLGFLTD---IDPKNAYEQLEACLER 98 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhccCCCcEEEEeC-------------CCCccccc---CCHHHHHHHHHHHHhc
Confidence 4789999999999998764 3679888742 11444443 4677888888888863
No 154
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.12 E-value=5 Score=30.68 Aligned_cols=89 Identities=20% Similarity=0.151 Sum_probs=52.4
Q ss_pred ccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHH-HHHHH
Q psy1202 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDT-VGRLS 86 (136)
Q Consensus 8 ~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~-~~~~~ 86 (136)
++++|+-||. ---||+..|+|.|..= .+.-..--+.+.+.|+-..-. ++.++.+...+++.++..+.. ..+.
T Consensus 253 a~lvig~ggT-MarEaAlLGtpaIs~~-pGkll~vdk~lie~G~~~~s~----~~~~~~~~a~~~l~~~~~kK~~~~k~- 325 (346)
T COG1817 253 ATLVIGAGGT-MAREAALLGTPAISCY-PGKLLAVDKYLIEKGLLYHST----DEIAIVEYAVRNLKYRRLKKTGVLKL- 325 (346)
T ss_pred hheeecCCch-HHHHHHHhCCceEEec-CCccccccHHHHhcCceeecC----CHHHHHHHHHHHhhchhhcccccccc-
Confidence 4567777664 3689999999999872 222222345556667655443 444555555555555543222 2222
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHc
Q psy1202 87 KQVRSLPYSNLDQAVRWAEHVAAN 110 (136)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ie~~~~~ 110 (136)
.++.+.+.+.++.++..
T Consensus 326 -------e~~~~~ii~~ve~~~e~ 342 (346)
T COG1817 326 -------EDPTRLIIDVVEEMLET 342 (346)
T ss_pred -------ccHHHHHHHHHHHHhhh
Confidence 15667777777777654
No 155
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=86.09 E-value=2.7 Score=34.09 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=40.4
Q ss_pred CCccEEEeCCChhHHHHHHHh----CCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 6 RNCKLFITHGGIHSSMEAVYH----GVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~----g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
..+|++|+-||-||++.++.. ++|++.+.. -.+|... ++..+++.+.|.++++++
T Consensus 261 ~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~-------------G~LGFLt---~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 261 TKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSM-------------GSLGFMT---PFHSEQYRDCLDAILKGP 319 (508)
T ss_pred cCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeC-------------CCcceec---ccCHHHHHHHHHHHHcCC
Confidence 358999999999999999764 467777621 1244433 347889999999998764
No 156
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.01 E-value=2.3 Score=31.75 Aligned_cols=54 Identities=13% Similarity=0.335 Sum_probs=37.5
Q ss_pred CccEEEeCCChhHHHHHHH---hCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 7 NCKLFITHGGIHSSMEAVY---HGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~---~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
.++++|+-||-||+++++. .++|++.+|.-. +|..- +++++++.+++.+++++.
T Consensus 57 ~~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~-------------lGFl~---~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 57 DVDFIIAIGGDGTILRIEHKTKKDIPILGINMGT-------------LGFLT---EVEPEETFFALSRLLEGD 113 (277)
T ss_pred CCCEEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC-------------CCccc---cCCHHHHHHHHHHHHcCC
Confidence 5789999999999999984 356888887410 12111 235677888888887553
No 157
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.49 E-value=3.1 Score=31.33 Aligned_cols=54 Identities=35% Similarity=0.509 Sum_probs=39.9
Q ss_pred CccEEEeCCChhHHHHHHH----hCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 7 NCKLFITHGGIHSSMEAVY----HGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~----~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
.++++|+-||-||+++++. .++|++.+.. -.+|... +++++++.++|++++++.
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~-------------G~lGFl~---~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALARHNVPVLGINR-------------GRLGFLT---DIRPDELEFKLAEVLDGH 119 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeC-------------Ccccccc---cCCHHHHHHHHHHHHcCC
Confidence 4789999999999999975 3678888853 1244332 456789999999998653
No 158
>PLN02939 transferase, transferring glycosyl groups
Probab=84.89 E-value=6.4 Score=34.52 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=55.9
Q ss_pred CCccEEEeC----CChhHHHHHHHhCCCEEeecCCc--ChHHH--HHHH-HHcCceeEcCCCCCCHHHHHHHHHHHhc--
Q psy1202 6 RNCKLFITH----GGIHSSMEAVYHGVPVVMMPGFS--DQHQN--CKLM-EEKGMGLITPHETITGDILYITIREVLN-- 74 (136)
Q Consensus 6 ~~~~~~I~h----gG~~s~~Eal~~g~P~i~~P~~~--dq~~n--a~~~-~~~G~g~~l~~~~~~~~~l~~~i~~ll~-- 74 (136)
..+|+|+.. +-..+.+||+.+|+|.|+...-+ |...+ .... ...+-|..++. .+++++.++|.+++.
T Consensus 855 AaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~--~D~eaLa~AL~rAL~~~ 932 (977)
T PLN02939 855 AASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLT--PDEQGLNSALERAFNYY 932 (977)
T ss_pred HhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecC--CCHHHHHHHHHHHHHHh
Confidence 456777743 22457999999999999875533 22211 1111 11245666653 377889998888764
Q ss_pred --ChHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy1202 75 --NPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHV 107 (136)
Q Consensus 75 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~ 107 (136)
+++.+.++.+.+ +.. .+ +.+..+...+.+
T Consensus 933 ~~dpe~~~~L~~~a--m~~-dF-SWe~~A~qYeeL 963 (977)
T PLN02939 933 KRKPEVWKQLVQKD--MNI-DF-SWDSSASQYEEL 963 (977)
T ss_pred ccCHHHHHHHHHHH--HHh-cC-CHHHHHHHHHHH
Confidence 677777776533 222 22 345555554443
No 159
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.36 E-value=3.2 Score=34.11 Aligned_cols=54 Identities=15% Similarity=0.358 Sum_probs=39.9
Q ss_pred CccEEEeCCChhHHHHHHHh----CCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 7 NCKLFITHGGIHSSMEAVYH----GVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~----g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
.++++|+-||=||++.++.. ++|++.+-. + .+|... +++.+++.+.+++++++.
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~-G------------~lGFL~---~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVNGEEIPIICINM-G------------TVGFLT---EFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcC-C------------CCCcCc---ccCHHHHHHHHHHHHcCC
Confidence 47899999999999999763 779888842 0 133322 456788999999998654
No 160
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=81.77 E-value=0.53 Score=32.49 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=23.6
Q ss_pred CCCCccEEEeCCChhHHHHHHHhCCCEEeecCCc
Q psy1202 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFS 37 (136)
Q Consensus 4 ~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~ 37 (136)
.+..++++|++||....+.... ++|++-+|..+
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 4688999999999888888877 99999998643
No 161
>PLN02727 NAD kinase
Probab=80.75 E-value=5.7 Score=34.63 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=40.5
Q ss_pred CCccEEEeCCChhHHHHHHHh----CCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 6 RNCKLFITHGGIHSSMEAVYH----GVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~----g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
..+|++|+-||=||++.++.. ++|++.+-. + .+|.+. ++..+++.+.|.+++++.
T Consensus 742 ~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINl-G------------rLGFLT---di~~ee~~~~L~~Il~G~ 800 (986)
T PLN02727 742 ERVDFVACLGGDGVILHASNLFRGAVPPVVSFNL-G------------SLGFLT---SHYFEDFRQDLRQVIHGN 800 (986)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeC-C------------Cccccc---cCCHHHHHHHHHHHHcCC
Confidence 368999999999999999764 678888732 0 233333 357788999999998654
No 162
>PLN02929 NADH kinase
Probab=80.44 E-value=7.9 Score=29.35 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=44.6
Q ss_pred CCccEEEeCCChhHHHHHHH---hCCCEEeecCCc------ChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 6 RNCKLFITHGGIHSSMEAVY---HGVPVVMMPGFS------DQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~---~g~P~i~~P~~~------dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
..+|++|+-||-||++-++. .++|++.+-.-. .++.+... +...+|.... .+.+++.+.|++++++.
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r~lGfL~~---~~~~~~~~~L~~il~g~ 138 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARRSTGHLCA---ATAEDFEQVLDDVLFGR 138 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cccCcccccc---CCHHHHHHHHHHHHcCC
Confidence 46799999999999999854 468999984321 12222211 1123565554 36789999999999764
No 163
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=78.38 E-value=6.9 Score=29.71 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=35.3
Q ss_pred EEEeCCChhHHHHHHHhCCCEEeecCCcCh---HHHHHHHHHcCceeEcCC
Q psy1202 10 LFITHGGIHSSMEAVYHGVPVVMMPGFSDQ---HQNCKLMEEKGMGLITPH 57 (136)
Q Consensus 10 ~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq---~~na~~~~~~G~g~~l~~ 57 (136)
++||--..+-+.||+..|+|+.++|...-. ....+.+.+.|....++.
T Consensus 232 i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~ 282 (311)
T PF06258_consen 232 IVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTG 282 (311)
T ss_pred EEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHHHCCCEEECCC
Confidence 466666688889999999999999887621 224556677788777763
No 164
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=78.06 E-value=9.3 Score=28.08 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=36.7
Q ss_pred CCccEEEeCCChhHHHHHHHh----CCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcC
Q psy1202 6 RNCKLFITHGGIHSSMEAVYH----GVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNN 75 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~----g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~ 75 (136)
..+|++|+-||=||++.++.. ++|++.+-. + .+|...+ ....+++.+.+.++..+
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~-G------------~lGFL~~--~~~~~e~~~~l~~~~~~ 82 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNR-G------------SVGFLMN--EYSEDDLLERIAAAEPT 82 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeC-C------------CCCcccC--CCCHHHHHHHHHHhhcC
Confidence 357999999999999988654 678888742 1 1343332 23456677777776543
No 165
>smart00096 UTG Uteroglobin.
Probab=77.51 E-value=12 Score=21.95 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHhcChHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc
Q psy1202 61 TGDILYITIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAAN 110 (136)
Q Consensus 61 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~ 110 (136)
+++.....+..--.+++..+++.++++..-.-+......+...++.+...
T Consensus 17 t~~~Y~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~kI~~s 66 (69)
T smart00096 17 TPSSYEASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTEKIYTS 66 (69)
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 67889999999989999999999988877665556677888889888764
No 166
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=77.21 E-value=15 Score=29.77 Aligned_cols=87 Identities=18% Similarity=0.123 Sum_probs=55.3
Q ss_pred ccEEE---eCCChhHH-HHHHHhCC----CEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh--H
Q psy1202 8 CKLFI---THGGIHSS-MEAVYHGV----PVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP--R 77 (136)
Q Consensus 8 ~~~~I---~hgG~~s~-~Eal~~g~----P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~--~ 77 (136)
+|+++ ..-|+|.+ .|.++++. |+|+.-+.+- .+...-++.+++ .+.++++++|.+.|+.+ +
T Consensus 382 ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGa-------a~~l~~AllVNP--~d~~~~A~ai~~AL~m~~~E 452 (487)
T TIGR02398 382 ADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGA-------AVELKGALLTNP--YDPVRMDETIYVALAMPKAE 452 (487)
T ss_pred CCEEEECccccccCcchhhHHhhhcCCCCCEEEeccccc-------hhhcCCCEEECC--CCHHHHHHHHHHHHcCCHHH
Confidence 45544 24477755 69988877 6666543322 234445777774 47899999999999875 4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy1202 78 YRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAA 109 (136)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~ 109 (136)
-+++..++.+.+.. ..+..|.+.++.
T Consensus 453 r~~R~~~l~~~v~~------~d~~~W~~~fl~ 478 (487)
T TIGR02398 453 QQARMREMFDAVNY------YDVQRWADEFLA 478 (487)
T ss_pred HHHHHHHHHHHHhh------CCHHHHHHHHHH
Confidence 45555555555544 245777776664
No 167
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=75.76 E-value=4.7 Score=34.10 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=43.3
Q ss_pred CCccEEEeC---CC-hhHHHHHHHhCCC---EEee-cCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh-
Q psy1202 6 RNCKLFITH---GG-IHSSMEAVYHGVP---VVMM-PGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP- 76 (136)
Q Consensus 6 ~~~~~~I~h---gG-~~s~~Eal~~g~P---~i~~-P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~- 76 (136)
..+|+|+.. -| ..++.|++++++| ++++ .+.+.- ..+ .-|+.+++. +.+.++++|.++++.+
T Consensus 360 ~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~----~~l---~~~llv~P~--d~~~la~ai~~~l~~~~ 430 (726)
T PRK14501 360 RAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAA----AEL---AEALLVNPN--DIEGIAAAIKRALEMPE 430 (726)
T ss_pred HhccEEEecccccccCcccceEEEEcCCCCceEEEecccchh----HHh---CcCeEECCC--CHHHHHHHHHHHHcCCH
Confidence 345666543 24 4456899999775 2222 222221 111 126777743 6799999999999864
Q ss_pred -HHHHHHHHHHHHH
Q psy1202 77 -RYRDTVGRLSKQV 89 (136)
Q Consensus 77 -~~~~~~~~~~~~~ 89 (136)
+.+++..+..+.+
T Consensus 431 ~e~~~r~~~~~~~v 444 (726)
T PRK14501 431 EEQRERMQAMQERL 444 (726)
T ss_pred HHHHHHHHHHHHHH
Confidence 4455555544444
No 168
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=75.17 E-value=13 Score=28.91 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=44.8
Q ss_pred CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHh
Q psy1202 15 GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVL 73 (136)
Q Consensus 15 gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll 73 (136)
=|.|+++-.+..|+|+.+- .+..-...+++.|+-+....++++...+.++=+++.
T Consensus 277 QgiGnI~lLl~~G~~v~L~----~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~rql~ 331 (360)
T PF07429_consen 277 QGIGNICLLLQLGKKVFLS----RDNPFWQDLKEQGIPVLFYGDELDEALVREAQRQLA 331 (360)
T ss_pred hhHhHHHHHHHcCCeEEEe----cCChHHHHHHhCCCeEEeccccCCHHHHHHHHHHHh
Confidence 4789999999999999986 333455678888999998888998888888777775
No 169
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=72.91 E-value=24 Score=28.47 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=56.0
Q ss_pred CCCCCCccEEEeCCChh--------------HHHHHHHhCCCEEee-----cCCcChHHHHHHHHH-cCceeE-cCCCCC
Q psy1202 2 PTGHRNCKLFITHGGIH--------------SSMEAVYHGVPVVMM-----PGFSDQHQNCKLMEE-KGMGLI-TPHETI 60 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~--------------s~~Eal~~g~P~i~~-----P~~~dq~~na~~~~~-~G~g~~-l~~~~~ 60 (136)
|--|..++++||--|.- ++.|.-..|+|++++ |.-.+....+..+++ .++.+. ++-.++
T Consensus 141 I~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l 220 (492)
T PF09547_consen 141 ITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQL 220 (492)
T ss_pred eccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHc
Confidence 44689999999988853 456777899999997 555555666666655 788754 455577
Q ss_pred CHHHHHHHHHHHhcC
Q psy1202 61 TGDILYITIREVLNN 75 (136)
Q Consensus 61 ~~~~l~~~i~~ll~~ 75 (136)
+.+++...++++|-.
T Consensus 221 ~~~DI~~Il~~vLyE 235 (492)
T PF09547_consen 221 REEDITRILEEVLYE 235 (492)
T ss_pred CHHHHHHHHHHHHhc
Confidence 889999999999964
No 170
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=71.91 E-value=16 Score=20.89 Aligned_cols=50 Identities=10% Similarity=0.159 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHhcChHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc
Q psy1202 61 TGDILYITIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAAN 110 (136)
Q Consensus 61 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~ 110 (136)
+.+.+...+.....++..++++.++.+-+...+......+...++.+...
T Consensus 15 s~~~y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~~I~~S 64 (67)
T cd00633 15 SEEEYKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLEKILAS 64 (67)
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHcC
Confidence 67889999999999999999999999999988667777788888877654
No 171
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.14 E-value=15 Score=27.17 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=24.0
Q ss_pred CCccEEEeCCChhHHHHHHH----hCCCEEeec
Q psy1202 6 RNCKLFITHGGIHSSMEAVY----HGVPVVMMP 34 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~----~g~P~i~~P 34 (136)
..+|++|+-||-||++-++. .++|++.+-
T Consensus 32 ~~~D~vi~iGGDGT~L~a~~~~~~~~iPilGIN 64 (259)
T PRK00561 32 DGADYLFVLGGDGFFVSTAANYNCAGCKVVGIN 64 (259)
T ss_pred CCCCEEEEECCcHHHHHHHHHhcCCCCcEEEEe
Confidence 35799999999999998874 467988884
No 172
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=67.49 E-value=22 Score=24.69 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=27.4
Q ss_pred ccEE-EeCCChhHHHHHHH---------hCCCEEeec---CCcChHHHHHHHHHcCc
Q psy1202 8 CKLF-ITHGGIHSSMEAVY---------HGVPVVMMP---GFSDQHQNCKLMEEKGM 51 (136)
Q Consensus 8 ~~~~-I~hgG~~s~~Eal~---------~g~P~i~~P---~~~dq~~na~~~~~~G~ 51 (136)
+|+| +-.||.||+-|.+. ..+|++++- ++.+-....+.+.+.|.
T Consensus 97 sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gf 153 (178)
T TIGR00730 97 ADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGF 153 (178)
T ss_pred CCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCC
Confidence 4554 45678999988743 489999873 23333344456666664
No 173
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.47 E-value=39 Score=23.45 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=36.9
Q ss_pred hHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHHH
Q psy1202 39 QHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRLS 86 (136)
Q Consensus 39 q~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 86 (136)
+..|+.+.++.|+-.++.-+..+.++|..+..+-|.|..-.|-...++
T Consensus 110 ~~LN~aY~~rFgfPfI~aVkg~~k~~Il~a~~~Rl~n~~e~E~~tAl~ 157 (176)
T COG3195 110 TELNAAYVERFGFPFIIAVKGNTKDTILAAFERRLDNDREQEFATALA 157 (176)
T ss_pred HHHHHHHHHhcCCceEEeecCCCHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 467999999999988877767789999999998888865444444443
No 174
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.00 E-value=10 Score=28.61 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=24.3
Q ss_pred CccEEEeCCChhHHHHHHHh----CCCEEeecC
Q psy1202 7 NCKLFITHGGIHSSMEAVYH----GVPVVMMPG 35 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~----g~P~i~~P~ 35 (136)
..+++|+-||-||+++++.. ++|++.+..
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 47899999999999999854 789888853
No 175
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.28 E-value=72 Score=25.06 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=53.0
Q ss_pred hhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHHHHH-HhcCCCC
Q psy1202 17 IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRLSKQ-VRSLPYS 95 (136)
Q Consensus 17 ~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~-~~~~~~~ 95 (136)
.+-+.|++.+|.|++.-+ ..-.+.+-.-|=.+++.. +..++.+.++.++..++.|+++.+.+.. .... +.
T Consensus 277 ~~RvFeiagc~~~liT~~-----~~~~e~~f~pgk~~iv~~---d~kdl~~~~~yll~h~~erkeiae~~ye~V~~~-ht 347 (373)
T COG4641 277 TNRVFEIAGCGGFLITDY-----WKDLEKFFKPGKDIIVYQ---DSKDLKEKLKYLLNHPDERKEIAECAYERVLAR-HT 347 (373)
T ss_pred hhhHHHHhhcCCcccccc-----HHHHHHhcCCchheEEec---CHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHh-cc
Confidence 466889999999877753 222333333343444443 6799999999999988777777766633 3333 34
Q ss_pred hHHHHHHHHHHHH
Q psy1202 96 NLDQAVRWAEHVA 108 (136)
Q Consensus 96 ~~~~~~~~ie~~~ 108 (136)
-.+++...++.+.
T Consensus 348 ~~~r~~~~~~~i~ 360 (373)
T COG4641 348 YEERIFKLLNEIA 360 (373)
T ss_pred HHHHHHHHHHHHH
Confidence 5566655555544
No 176
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=62.72 E-value=32 Score=26.35 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=42.5
Q ss_pred CCCccEEEeC--CChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHH
Q psy1202 5 HRNCKLFITH--GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIRE 71 (136)
Q Consensus 5 h~~~~~~I~h--gG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ 71 (136)
......|+++ =|.||++-.+..|+|+.+-.. ..--..+.+.|+-+..+.+.++...+.++=++
T Consensus 226 ~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~----n~fwqdl~e~gv~Vlf~~d~L~~~~v~e~~rq 290 (322)
T PRK02797 226 QCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRD----NPFWQDLTEQGLPVLFTGDDLDEDIVREAQRQ 290 (322)
T ss_pred hCCEEEEeechhhHHhHHHHHHHCCCcEEEecC----CchHHHHHhCCCeEEecCCcccHHHHHHHHHH
Confidence 3333444433 478999999999999998721 12223477889999888878876666655333
No 177
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=62.58 E-value=29 Score=23.57 Aligned_cols=84 Identities=15% Similarity=0.312 Sum_probs=41.7
Q ss_pred CCccEEEeCCChh----HHHHHHHhCCCEEeecCCcChH---HHHHHHHH--cCceeEcC--CCCCCHHHHHHHHHHHhc
Q psy1202 6 RNCKLFITHGGIH----SSMEAVYHGVPVVMMPGFSDQH---QNCKLMEE--KGMGLITP--HETITGDILYITIREVLN 74 (136)
Q Consensus 6 ~~~~~~I~hgG~~----s~~Eal~~g~P~i~~P~~~dq~---~na~~~~~--~G~g~~l~--~~~~~~~~l~~~i~~ll~ 74 (136)
..+++||.-+|.. ++.-+ ....|+|.+|....+. +.-..+.+ .|+++..- .+..+..-+.-.|-.+ .
T Consensus 54 ~~~~viIa~AG~~a~Lpgvva~-~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~-~ 131 (150)
T PF00731_consen 54 RGADVIIAVAGMSAALPGVVAS-LTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILAL-K 131 (150)
T ss_dssp TTESEEEEEEESS--HHHHHHH-HSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHT-T
T ss_pred CCCEEEEEECCCcccchhhhee-ccCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhc-C
Confidence 4578888776632 23333 4589999999875532 21112222 34443322 1111222333333333 6
Q ss_pred ChHHHHHHHHHHHHHhc
Q psy1202 75 NPRYRDTVGRLSKQVRS 91 (136)
Q Consensus 75 ~~~~~~~~~~~~~~~~~ 91 (136)
|++++++.+..++...+
T Consensus 132 d~~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 132 DPELREKLRAYREKMKE 148 (150)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHc
Confidence 78889888887776543
No 178
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=61.16 E-value=40 Score=27.24 Aligned_cols=83 Identities=20% Similarity=0.236 Sum_probs=45.0
Q ss_pred eCCChhHH-HHHHHhCCC---EEeecCCcChHHHHHHHHHcC-ceeEcCCCCCCHHHHHHHHHHHhcCh--HHHHHHHHH
Q psy1202 13 THGGIHSS-MEAVYHGVP---VVMMPGFSDQHQNCKLMEEKG-MGLITPHETITGDILYITIREVLNNP--RYRDTVGRL 85 (136)
Q Consensus 13 ~hgG~~s~-~Eal~~g~P---~i~~P~~~dq~~na~~~~~~G-~g~~l~~~~~~~~~l~~~i~~ll~~~--~~~~~~~~~ 85 (136)
...|+|.+ .|-+++..+ ++++- +.|-.....+ .++.+++ .+.++++++|.+.|+-+ +-+++.+++
T Consensus 381 lrDGmNLva~Eyva~q~~~~GvLiLS------efaGaa~~L~~~al~VNP--~d~~~~A~ai~~AL~M~~~Er~~r~~~~ 452 (474)
T PF00982_consen 381 LRDGMNLVAKEYVACQDDNPGVLILS------EFAGAAEQLSEAALLVNP--WDIEEVADAIHEALTMPPEERKERHARL 452 (474)
T ss_dssp SSBS--HHHHHHHHHS-TS--EEEEE------TTBGGGGT-TTS-EEE-T--T-HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred hhhccCCcceEEEEEecCCCCceEee------ccCCHHHHcCCccEEECC--CChHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677655 677777665 33332 2222233445 4577774 47899999999999754 455555566
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHH
Q psy1202 86 SKQVRSLPYSNLDQAVRWAEHVAA 109 (136)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ie~~~~ 109 (136)
.+.+... .+..|.+.+++
T Consensus 453 ~~~v~~~------~~~~W~~~~l~ 470 (474)
T PF00982_consen 453 REYVREH------DVQWWAESFLR 470 (474)
T ss_dssp HHHHHHT-------HHHHHHHHHH
T ss_pred HHHhHhC------CHHHHHHHHHH
Confidence 6655542 45777777664
No 179
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=60.25 E-value=48 Score=25.09 Aligned_cols=51 Identities=22% Similarity=0.250 Sum_probs=32.8
Q ss_pred CccEEE-eCCChhHHHHHHHhCCCEEee--cCCc-C-hHHHHHHHHHcCceeEcCC
Q psy1202 7 NCKLFI-THGGIHSSMEAVYHGVPVVMM--PGFS-D-QHQNCKLMEEKGMGLITPH 57 (136)
Q Consensus 7 ~~~~~I-~hgG~~s~~Eal~~g~P~i~~--P~~~-d-q~~na~~~~~~G~g~~l~~ 57 (136)
.+|.+| |.-..+...||++.|+|+.+. |.+. + ....-+.+.+.+++...+.
T Consensus 244 ~Adyii~TaDSinM~sEAasTgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f~~ 299 (329)
T COG3660 244 AADYIISTADSINMCSEAASTGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPFEG 299 (329)
T ss_pred hcceEEEecchhhhhHHHhccCCCeEEEecCCcchHHHHHHHHHHHHhhhccccCc
Confidence 455655 455567789999999999887 4431 2 2334455666677766654
No 180
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=59.62 E-value=11 Score=30.91 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=27.2
Q ss_pred CCCCccEEEeCCChhHHHHHHHhCCCEEeecCCc
Q psy1202 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFS 37 (136)
Q Consensus 4 ~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~ 37 (136)
.+..+|++|+.||....+.. ...+|+|-++..+
T Consensus 61 ~~~~~dviIsrG~ta~~i~~-~~~iPVv~i~~s~ 93 (538)
T PRK15424 61 ATERCDAIIAAGSNGAYLKS-RLSVPVILIKPSG 93 (538)
T ss_pred hhCCCcEEEECchHHHHHHh-hCCCCEEEecCCH
Confidence 35678999999998888887 5679999998753
No 181
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=58.55 E-value=11 Score=27.44 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=21.5
Q ss_pred CccEEEeCCChhHHHHHHHhCCCEEee
Q psy1202 7 NCKLFITHGGIHSSMEAVYHGVPVVMM 33 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~g~P~i~~ 33 (136)
.++.+||-.+. +-+||+..|+|++++
T Consensus 199 ~s~~VvtinSt-vGlEAll~gkpVi~~ 224 (269)
T PF05159_consen 199 QSDAVVTINST-VGLEALLHGKPVIVF 224 (269)
T ss_pred hCCEEEEECCH-HHHHHHHcCCceEEe
Confidence 46778887664 579999999999998
No 182
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=56.82 E-value=41 Score=29.70 Aligned_cols=78 Identities=12% Similarity=0.061 Sum_probs=44.3
Q ss_pred CccEEEe---CCChhHH-HHHHHhCC---CEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhc-ChHH
Q psy1202 7 NCKLFIT---HGGIHSS-MEAVYHGV---PVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLN-NPRY 78 (136)
Q Consensus 7 ~~~~~I~---hgG~~s~-~Eal~~g~---P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~-~~~~ 78 (136)
.+|+++. .-|+|.+ .|+++++. .+++++- ....+..+ ..-|+.+++ .+.++++++|.+.|+ +++.
T Consensus 459 ~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSE---faGaa~~L--~~~AllVNP--~D~~~vA~AI~~AL~M~~~E 531 (934)
T PLN03064 459 VTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSE---FAGAAQSL--GAGAILVNP--WNITEVAASIAQALNMPEEE 531 (934)
T ss_pred hCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeC---CCchHHHh--CCceEEECC--CCHHHHHHHHHHHHhCCHHH
Confidence 3455542 3476655 69999855 2333332 22222222 124677774 367999999999998 5555
Q ss_pred HHHHHHHHHHHhc
Q psy1202 79 RDTVGRLSKQVRS 91 (136)
Q Consensus 79 ~~~~~~~~~~~~~ 91 (136)
|++..+.......
T Consensus 532 r~~r~~~~~~~V~ 544 (934)
T PLN03064 532 REKRHRHNFMHVT 544 (934)
T ss_pred HHHHHHHHHhhcc
Confidence 5554444444443
No 183
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=56.73 E-value=39 Score=22.93 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=20.6
Q ss_pred ccE-EEeCCChhHHH---HHHHhCCCEEeecCC
Q psy1202 8 CKL-FITHGGIHSSM---EAVYHGVPVVMMPGF 36 (136)
Q Consensus 8 ~~~-~I~hgG~~s~~---Eal~~g~P~i~~P~~ 36 (136)
+|+ ++-.||.||+. |++..++|+++++..
T Consensus 92 sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 92 ADVVVSVGGGYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred CCEEEEcCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 344 34567788875 457899999998753
No 184
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=56.27 E-value=60 Score=21.91 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=19.5
Q ss_pred ccEEEeCCChh------HHHHHHHhCCCEEeec
Q psy1202 8 CKLFITHGGIH------SSMEAVYHGVPVVMMP 34 (136)
Q Consensus 8 ~~~~I~hgG~~------s~~Eal~~g~P~i~~P 34 (136)
..++++++|.| .+.||...++|+|++.
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 44566665544 3578889999999995
No 185
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=55.93 E-value=13 Score=30.32 Aligned_cols=32 Identities=13% Similarity=0.375 Sum_probs=26.5
Q ss_pred CCCccEEEeCCChhHHHHHHHhCCCEEeecCCc
Q psy1202 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFS 37 (136)
Q Consensus 5 h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~ 37 (136)
+..+|++|+.||....+.. ...+|+|-+++.+
T Consensus 52 ~~~~dviIsrG~ta~~i~~-~~~iPVv~i~~s~ 83 (526)
T TIGR02329 52 AERCDVVVAGGSNGAYLKS-RLSLPVIVIKPTG 83 (526)
T ss_pred hCCCcEEEECchHHHHHHH-hCCCCEEEecCCh
Confidence 5578999999998888887 4579999998753
No 186
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=55.33 E-value=31 Score=25.63 Aligned_cols=63 Identities=13% Similarity=0.022 Sum_probs=37.4
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEee--cCCcChHHHHHHHHHcCceeEc--CCCCCCHHHHHHHHHHHh
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMM--PGFSDQHQNCKLMEEKGMGLIT--PHETITGDILYITIREVL 73 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~--P~~~dq~~na~~~~~~G~g~~l--~~~~~~~~~l~~~i~~ll 73 (136)
..++++|+.-. |.++=|.+.|+|+|.+ |-...+ ..- -..+..+.. +.+.++++++.++++++|
T Consensus 253 ~~a~l~I~~DS-gp~HlAaa~g~P~i~lfg~t~p~~--~~P--~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 253 AGADAVVGVDT-GLTHLAAALDKPTVTLYGATDPGR--TGG--YGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HcCCEEEeCCC-hHHHHHHHcCCCEEEEECCCCHhh--ccc--CCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 35788898765 4488888999999987 322111 000 000111111 244678899999988764
No 187
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=53.79 E-value=45 Score=23.97 Aligned_cols=46 Identities=24% Similarity=0.376 Sum_probs=31.1
Q ss_pred hhHHHHHHHhCCCEEeecCCcC--hHHHHHHHHHcCceeEcCCCCCCHHHHHH
Q psy1202 17 IHSSMEAVYHGVPVVMMPGFSD--QHQNCKLMEEKGMGLITPHETITGDILYI 67 (136)
Q Consensus 17 ~~s~~Eal~~g~P~i~~P~~~d--q~~na~~~~~~G~g~~l~~~~~~~~~l~~ 67 (136)
..|...|+..|+|+.++|-..+ +..-+..+-+.|+..+. +.+++.+
T Consensus 171 l~ta~~A~~~gr~v~~~pg~~~~~~~~G~~~Li~~GA~~i~-----~~~d~~~ 218 (220)
T TIGR00732 171 LITARYALEQGREVFAYPGDLNSPESDGCHKLIEQGAALIT-----SAKDILE 218 (220)
T ss_pred HHHHHHHHHhCCcEEEEcCCCCCccchHHHHHHHCCCEEEC-----CHHHHHH
Confidence 6777888999999999986433 44445566677865444 4555543
No 188
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=53.79 E-value=67 Score=21.73 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=21.8
Q ss_pred CccEEEeCCChh------HHHHHHHhCCCEEeec
Q psy1202 7 NCKLFITHGGIH------SSMEAVYHGVPVVMMP 34 (136)
Q Consensus 7 ~~~~~I~hgG~~------s~~Eal~~g~P~i~~P 34 (136)
+..++++++|.| .+.+|...++|+|++.
T Consensus 63 ~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 63 KLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 456677777754 4588999999999995
No 189
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=52.64 E-value=1.1e+02 Score=24.09 Aligned_cols=71 Identities=23% Similarity=0.426 Sum_probs=47.2
Q ss_pred CccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCce-eEcCCCCCCHHHHHHHHHHHhcC-hHHHHH
Q psy1202 7 NCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMG-LITPHETITGDILYITIREVLNN-PRYRDT 81 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g-~~l~~~~~~~~~l~~~i~~ll~~-~~~~~~ 81 (136)
+++++|.- =..+.+=|+..|+|.|.+-+ +......+++.|+- ..++.+..+.+.+...+.+.+++ ++.+++
T Consensus 285 ~~dl~Vg~-R~HsaI~al~~g~p~i~i~Y---~~K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 285 ACDLIVGM-RLHSAIMALAFGVPAIAIAY---DPKVRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLTKLDELRER 357 (385)
T ss_pred cCceEEee-hhHHHHHHHhcCCCeEEEee---cHHHHHHHHHcCCCcccccCCCCchHHHHHHHHHHHhccHHHHhh
Confidence 34554432 24567889999999999954 34455666666655 44555567888888887777654 666666
No 190
>PHA02754 hypothetical protein; Provisional
Probab=52.46 E-value=29 Score=19.64 Aligned_cols=26 Identities=8% Similarity=0.227 Sum_probs=20.8
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHhcC
Q psy1202 67 ITIREVLNNPRYRDTVGRLSKQVRSL 92 (136)
Q Consensus 67 ~~i~~ll~~~~~~~~~~~~~~~~~~~ 92 (136)
+.+.+++.+.++++.|++++..+..+
T Consensus 5 eEi~k~i~eK~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 5 EEIPKAIMEKDFKEAMRELKDILSEA 30 (67)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 34567778899999999999888764
No 191
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=51.12 E-value=61 Score=25.22 Aligned_cols=30 Identities=27% Similarity=0.472 Sum_probs=24.7
Q ss_pred CCccEEEeCCChhHHHHHHHh---CCCEEeecC
Q psy1202 6 RNCKLFITHGGIHSSMEAVYH---GVPVVMMPG 35 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~---g~P~i~~P~ 35 (136)
..+++++.-||-||.-..+.. .+|+|++|.
T Consensus 99 ~gVdlIvfaGGDGTarDVa~av~~~vPvLGipa 131 (355)
T COG3199 99 RGVDLIVFAGGDGTARDVAEAVGADVPVLGIPA 131 (355)
T ss_pred cCceEEEEeCCCccHHHHHhhccCCCceEeecc
Confidence 468999999999887666555 999999994
No 192
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=51.00 E-value=1.1e+02 Score=23.34 Aligned_cols=41 Identities=20% Similarity=0.386 Sum_probs=34.7
Q ss_pred EeCCChhHHHHHHHhCCCEEee-cCCcChHHHHHHHHHcCce
Q psy1202 12 ITHGGIHSSMEAVYHGVPVVMM-PGFSDQHQNCKLMEEKGMG 52 (136)
Q Consensus 12 I~hgG~~s~~Eal~~g~P~i~~-P~~~dq~~na~~~~~~G~g 52 (136)
+.--|.-.+.|++..|.|+|++ |++++-..-+..+.+.|-+
T Consensus 107 ~~v~g~e~l~e~l~~~~gvIl~~~H~gn~E~~~~~l~~~~~~ 148 (308)
T COG1560 107 VEVEGLEHLEEALANGRGVILVTPHFGNWELGGRALAQQGPK 148 (308)
T ss_pred eeecCHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHhCCC
Confidence 4455777899999999999997 9999998888888887766
No 193
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=50.25 E-value=47 Score=18.97 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHhcChHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy1202 61 TGDILYITIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAA 109 (136)
Q Consensus 61 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~ 109 (136)
+.+.....++.-..+++..+.+.++++-+..........+...++.+..
T Consensus 15 s~~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~~I~~ 63 (67)
T PF01099_consen 15 SPEEYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLEKIYN 63 (67)
T ss_dssp -HHHHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHc
Confidence 5677888888888888999999999988886654555566666776654
No 194
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=49.73 E-value=22 Score=26.49 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=25.0
Q ss_pred CCCccEEEeCCChhHHHHHHHh----CCCEEeecC
Q psy1202 5 HRNCKLFITHGGIHSSMEAVYH----GVPVVMMPG 35 (136)
Q Consensus 5 h~~~~~~I~hgG~~s~~Eal~~----g~P~i~~P~ 35 (136)
...+|++|+-||=||++.++.. ++|++.++.
T Consensus 74 ~~~~D~ii~lGGDGT~L~~~~~~~~~~~Pilgin~ 108 (285)
T PF01513_consen 74 EEGVDLIIVLGGDGTFLRAARLFGDYDIPILGINT 108 (285)
T ss_dssp CCCSSEEEEEESHHHHHHHHHHCTTST-EEEEEES
T ss_pred ccCCCEEEEECCCHHHHHHHHHhccCCCcEEeecC
Confidence 3578999999999999999753 679999863
No 195
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=49.64 E-value=95 Score=22.29 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=23.9
Q ss_pred HHHHhCCCEEeecCCcC-------hHHHHHHHHHcCceeEcC
Q psy1202 22 EAVYHGVPVVMMPGFSD-------QHQNCKLMEEKGMGLITP 56 (136)
Q Consensus 22 Eal~~g~P~i~~P~~~d-------q~~na~~~~~~G~g~~l~ 56 (136)
++.-.++|+++.|-... -..|.+.+.+.|+-++-+
T Consensus 127 ~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi~P 168 (209)
T PLN02496 127 RAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPP 168 (209)
T ss_pred HHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEECC
Confidence 44445899999997532 245778888888766544
No 196
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=49.04 E-value=74 Score=20.86 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=19.8
Q ss_pred ccEEEeCCChh------HHHHHHHhCCCEEeec
Q psy1202 8 CKLFITHGGIH------SSMEAVYHGVPVVMMP 34 (136)
Q Consensus 8 ~~~~I~hgG~~------s~~Eal~~g~P~i~~P 34 (136)
..+++.++|.| .+.+|...++|+|++.
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~ 92 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVIT 92 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 45677775533 4578888999999995
No 197
>PRK13057 putative lipid kinase; Reviewed
Probab=48.55 E-value=25 Score=26.02 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=24.0
Q ss_pred CCccEEEeCCChhHHHHHH----HhCCCEEeecC
Q psy1202 6 RNCKLFITHGGIHSSMEAV----YHGVPVVMMPG 35 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal----~~g~P~i~~P~ 35 (136)
+..+.+|.-||=||+.|++ ..++|+-++|.
T Consensus 49 ~~~d~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 49 DGVDLVIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred cCCCEEEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 3468899999999998886 34678888895
No 198
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=48.28 E-value=1.1e+02 Score=24.86 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=48.9
Q ss_pred CCCccEEEeCCCh--------------hHHHHHHHhCCCEEee-----cCCcChHHHHHHHH-HcCce-eEcCCCCCCHH
Q psy1202 5 HRNCKLFITHGGI--------------HSSMEAVYHGVPVVMM-----PGFSDQHQNCKLME-EKGMG-LITPHETITGD 63 (136)
Q Consensus 5 h~~~~~~I~hgG~--------------~s~~Eal~~g~P~i~~-----P~~~dq~~na~~~~-~~G~g-~~l~~~~~~~~ 63 (136)
|..+.++|+-.|. ..+-|.-..++|++++ |...+....+..++ +.++. +.++-.+++.+
T Consensus 144 hstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l~~~ 223 (492)
T TIGR02836 144 HSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESMRES 223 (492)
T ss_pred cCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHcCHH
Confidence 8888889985552 2455667889999997 33333333344453 35765 55666678899
Q ss_pred HHHHHHHHHhcC
Q psy1202 64 ILYITIREVLNN 75 (136)
Q Consensus 64 ~l~~~i~~ll~~ 75 (136)
++.+.++++|-.
T Consensus 224 DI~~il~~vL~E 235 (492)
T TIGR02836 224 DILSVLEEVLYE 235 (492)
T ss_pred HHHHHHHHHHhc
Confidence 999999999965
No 199
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=47.81 E-value=93 Score=21.62 Aligned_cols=48 Identities=25% Similarity=0.454 Sum_probs=32.9
Q ss_pred CCCEEeecCCc----C---hHHHHHHHHHcCceeEcCCCC------------CCHHHHHHHHHHHhc
Q psy1202 27 GVPVVMMPGFS----D---QHQNCKLMEEKGMGLITPHET------------ITGDILYITIREVLN 74 (136)
Q Consensus 27 g~P~i~~P~~~----d---q~~na~~~~~~G~g~~l~~~~------------~~~~~l~~~i~~ll~ 74 (136)
++|+++.|-.. . ...|...+.+.|+-++-+... .+.+++.+.+.+.++
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 89999999643 2 266899999999877665421 245666666666553
No 200
>KOG4180|consensus
Probab=47.75 E-value=10 Score=29.23 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=24.0
Q ss_pred CCccEEEeCCChhHHHHHHH----hCCCEEee
Q psy1202 6 RNCKLFITHGGIHSSMEAVY----HGVPVVMM 33 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~----~g~P~i~~ 33 (136)
+-+|++|+-||-||++-|.. -.+|+|.+
T Consensus 104 ~waD~VisvGGDGTfL~Aasrv~~~~~PViGv 135 (395)
T KOG4180|consen 104 RWADMVISVGGDGTFLLAASRVIDDSKPVIGV 135 (395)
T ss_pred chhhEEEEecCccceeehhhhhhccCCceeee
Confidence 45788999999999988765 67999998
No 201
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=47.57 E-value=54 Score=21.38 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=25.2
Q ss_pred ccE-EEeCCChhHHHHHHHh---------CC-CEEeec---CCcChHHHHHHHHHcCc
Q psy1202 8 CKL-FITHGGIHSSMEAVYH---------GV-PVVMMP---GFSDQHQNCKLMEEKGM 51 (136)
Q Consensus 8 ~~~-~I~hgG~~s~~Eal~~---------g~-P~i~~P---~~~dq~~na~~~~~~G~ 51 (136)
+++ ++-.||.||+-|.... .. |++++- ++.+-....+.+.+.|.
T Consensus 54 sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~ 111 (133)
T PF03641_consen 54 SDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGF 111 (133)
T ss_dssp ESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTS
T ss_pred CCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCC
Confidence 344 5578889999887532 34 988874 33333333445555553
No 202
>PRK06270 homoserine dehydrogenase; Provisional
Probab=46.85 E-value=54 Score=25.10 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=35.6
Q ss_pred CCCCCccEEEe------CCC---hhHHHHHHHhCCCEEe---ecCCcChHHHHHHHHHcCceeEc
Q psy1202 3 TGHRNCKLFIT------HGG---IHSSMEAVYHGVPVVM---MPGFSDQHQNCKLMEEKGMGLIT 55 (136)
Q Consensus 3 L~h~~~~~~I~------hgG---~~s~~Eal~~g~P~i~---~P~~~dq~~na~~~~~~G~g~~l 55 (136)
|..+..+++|- |+| ..-+.+++..|+++++ -|.........+.+++.|+.+..
T Consensus 85 l~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ 149 (341)
T PRK06270 85 IRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRY 149 (341)
T ss_pred hhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEE
Confidence 45567788764 332 3445889999999999 47755445556666677776654
No 203
>PRK13059 putative lipid kinase; Reviewed
Probab=46.46 E-value=24 Score=26.27 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=23.6
Q ss_pred CCccEEEeCCChhHHHHHH---H---hCCCEEeecC
Q psy1202 6 RNCKLFITHGGIHSSMEAV---Y---HGVPVVMMPG 35 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal---~---~g~P~i~~P~ 35 (136)
...+++|.-||=||+.|.+ . .++|+-++|.
T Consensus 55 ~~~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 55 ESYKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred cCCCEEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 3568999999999998885 2 3478888895
No 204
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=46.22 E-value=38 Score=23.08 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=21.9
Q ss_pred CccEEEeCCChhH------HHHHHHhCCCEEeec
Q psy1202 7 NCKLFITHGGIHS------SMEAVYHGVPVVMMP 34 (136)
Q Consensus 7 ~~~~~I~hgG~~s------~~Eal~~g~P~i~~P 34 (136)
+..++++++|.|+ +.||...+.|+|++.
T Consensus 60 ~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 60 RPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 4567778877654 479999999999994
No 205
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=45.93 E-value=24 Score=22.68 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=21.7
Q ss_pred CccEEEeCCChhHHHHHHHh----C-----CCEEeecC
Q psy1202 7 NCKLFITHGGIHSSMEAVYH----G-----VPVVMMPG 35 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~----g-----~P~i~~P~ 35 (136)
..+.+|.-||-||+.|.+.. . .|+.++|.
T Consensus 49 ~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~ 86 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPL 86 (124)
T ss_pred cCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCC
Confidence 35688999999999998642 2 56777775
No 206
>KOG0257|consensus
Probab=44.02 E-value=46 Score=26.50 Aligned_cols=111 Identities=17% Similarity=0.108 Sum_probs=67.3
Q ss_pred CCCCCccEEEeCCChhHHHHH----HHhCCCEEee-cCCcChHHHHHHHHHcCceeEcCC---------CCCCHHHHHHH
Q psy1202 3 TGHRNCKLFITHGGIHSSMEA----VYHGVPVVMM-PGFSDQHQNCKLMEEKGMGLITPH---------ETITGDILYIT 68 (136)
Q Consensus 3 L~h~~~~~~I~hgG~~s~~Ea----l~~g~P~i~~-P~~~dq~~na~~~~~~G~g~~l~~---------~~~~~~~l~~~ 68 (136)
+..|..+++||-|....+.-+ +..|.=+|++ |++.....+..++-..++.+-+.. -.++.+++..+
T Consensus 89 ~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~ 168 (420)
T KOG0257|consen 89 LLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESK 168 (420)
T ss_pred ccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhh
Confidence 345777899999997766644 3568888888 766555666666554555544441 12455667666
Q ss_pred HHHH-----hc---Ch----HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCC
Q psy1202 69 IREV-----LN---NP----RYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAANKGVLGY 116 (136)
Q Consensus 69 i~~l-----l~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~~~~~~l 116 (136)
+..= ++ || --|+...++++.+.+. ++-.+.+.+-..+-..+..|.
T Consensus 169 ~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~---~~lvisDevYe~~v~d~~~h~ 225 (420)
T KOG0257|consen 169 ITEKTKAIILNTPHNPTGKVFSREELERIAELCKKH---GLLVISDEVYEWLVYDGNKHI 225 (420)
T ss_pred ccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHC---CEEEEEhhHhHHHhhCCCcce
Confidence 6542 22 22 3578888888888773 344455555444444454443
No 207
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=43.91 E-value=52 Score=24.53 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=37.5
Q ss_pred CCccEEEeCCChhHHHHHHHhC----CCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhc
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHG----VPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLN 74 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g----~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~ 74 (136)
..+++++.=||-||++.+.... +|++.+=. -.+|...+. ..+++.+.+.++++
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~~~~pilgin~-------------G~lGFLt~~---~~~~~~~~~~~~~~ 110 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLARLDIPVLGINL-------------GHLGFLTDF---EPDELEKALDALLE 110 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhccCCCCEEEEeC-------------CCccccccc---CHHHHHHHHHHHhc
Confidence 4578899999999999887543 58887721 125555543 46788888888876
No 208
>PRK11914 diacylglycerol kinase; Reviewed
Probab=43.89 E-value=30 Score=25.85 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=24.3
Q ss_pred CCccEEEeCCChhHHHHHH----HhCCCEEeecC
Q psy1202 6 RNCKLFITHGGIHSSMEAV----YHGVPVVMMPG 35 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal----~~g~P~i~~P~ 35 (136)
...|++|.-||=||+.|++ ..++|+-++|.
T Consensus 63 ~~~d~vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 63 KGTDALVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred cCCCEEEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 3468999999999999987 34688888895
No 209
>PRK13054 lipid kinase; Reviewed
Probab=43.74 E-value=33 Score=25.59 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=23.7
Q ss_pred CCccEEEeCCChhHHHHHHHh------C--CCEEeecC
Q psy1202 6 RNCKLFITHGGIHSSMEAVYH------G--VPVVMMPG 35 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~------g--~P~i~~P~ 35 (136)
...+++|.-||=||+.|.+.. + +|+-++|.
T Consensus 55 ~~~d~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 55 LGVATVIAGGGDGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred cCCCEEEEECCccHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 456899999999999998754 2 47777885
No 210
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=43.19 E-value=33 Score=25.33 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=21.7
Q ss_pred CccEEEeCCChhHHHHHHHh-----CCCEEe-ecC
Q psy1202 7 NCKLFITHGGIHSSMEAVYH-----GVPVVM-MPG 35 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~-----g~P~i~-~P~ 35 (136)
..+++|.-||=||+.|++.. ..|.+. +|.
T Consensus 57 ~~d~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 57 GVDTVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CCCEEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 46899999999999997643 345555 785
No 211
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=42.51 E-value=25 Score=24.31 Aligned_cols=48 Identities=19% Similarity=0.267 Sum_probs=31.6
Q ss_pred HhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHH
Q psy1202 25 YHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREV 72 (136)
Q Consensus 25 ~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~l 72 (136)
..|+|.--+=++.|+..|...+.+.|+--+..++.++.+.+.+.+++-
T Consensus 119 ~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~~~~~gL~~~ 166 (169)
T PF12689_consen 119 KTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTWDEFERGLEKF 166 (169)
T ss_dssp HH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHHHHHHHH
T ss_pred hcCCChhHEEEecCchhcceeeEecCcEEEEeCCCCCHHHHHHHHHHH
Confidence 456666666678899999999998999877777788888888877653
No 212
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=42.20 E-value=30 Score=28.56 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=40.1
Q ss_pred CccEEEeCCC---hhHHHHHHHhCCCEEeecCCcCh-HHHHH----------------HHHH-cCceeEcCCCCCCHHHH
Q psy1202 7 NCKLFITHGG---IHSSMEAVYHGVPVVMMPGFSDQ-HQNCK----------------LMEE-KGMGLITPHETITGDIL 65 (136)
Q Consensus 7 ~~~~~I~hgG---~~s~~Eal~~g~P~i~~P~~~dq-~~na~----------------~~~~-~G~g~~l~~~~~~~~~l 65 (136)
++++||--|. .-+.+||+++|+|.|---+...+ ..|.. .++. .|---+..-+.-+.++|
T Consensus 341 ~akvfiGlGfP~EgPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v 420 (559)
T PF15024_consen 341 KAKVFIGLGFPYEGPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEV 420 (559)
T ss_pred hhhEeeecCCCCCCCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHH
Confidence 4566776654 34689999999988764221111 11111 1221 33222222223477899
Q ss_pred HHHHHHHhcCh
Q psy1202 66 YITIREVLNNP 76 (136)
Q Consensus 66 ~~~i~~ll~~~ 76 (136)
.++|+++++++
T Consensus 421 ~~Avk~il~~~ 431 (559)
T PF15024_consen 421 EAAVKAILATP 431 (559)
T ss_pred HHHHHHHHhcC
Confidence 99999999764
No 213
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=41.88 E-value=26 Score=26.85 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=25.4
Q ss_pred CCCCccEEEeCCChhH---HHHHHHhCCCEEee
Q psy1202 4 GHRNCKLFITHGGIHS---SMEAVYHGVPVVMM 33 (136)
Q Consensus 4 ~h~~~~~~I~hgG~~s---~~Eal~~g~P~i~~ 33 (136)
..-+-|+++++||.-+ .+.|...++|+++.
T Consensus 88 ~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 88 RKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 3445689999999886 89999999999986
No 214
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=41.59 E-value=1.2e+02 Score=25.70 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCEEeecCCc-ChHHHHH--HHHHcCceeEcCCCCCCHHHHHHHHHHHh
Q psy1202 19 SSMEAVYHGVPVVMMPGFS-DQHQNCK--LMEEKGMGLITPHETITGDILYITIREVL 73 (136)
Q Consensus 19 s~~Eal~~g~P~i~~P~~~-dq~~na~--~~~~~G~g~~l~~~~~~~~~l~~~i~~ll 73 (136)
|.+|+++.|+|.|..-+-| -+..+-. .-...|+-++-+. ..+.++..+.|.+.+
T Consensus 485 TPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~-~~n~~e~v~~la~~l 541 (633)
T PF05693_consen 485 TPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRR-DKNYDESVNQLADFL 541 (633)
T ss_dssp HHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SS-SS-HHHHHHHHHHHH
T ss_pred ChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCC-CCCHHHHHHHHHHHH
Confidence 6999999999999986642 1111100 1134566655443 446666666666665
No 215
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=41.19 E-value=94 Score=21.73 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=37.8
Q ss_pred HHHHHHHhCCCEEeecCCcChHHHHHHHHHcCceeE-cCCCCCCHHHHHHHHHHHhcC
Q psy1202 19 SSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLI-TPHETITGDILYITIREVLNN 75 (136)
Q Consensus 19 s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~-l~~~~~~~~~l~~~i~~ll~~ 75 (136)
.+-|.+.+++|+|..-+..+.....+.+.+.|--.. ++++ +...+...|..+|.+
T Consensus 122 ~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~lt~~--NR~~i~~~Il~~L~~ 177 (179)
T COG1618 122 AVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVFLTPE--NRNRILNEILSVLKG 177 (179)
T ss_pred HHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEEEEccc--hhhHHHHHHHHHhcc
Confidence 355677899999888665666666777777766655 7754 445677777766654
No 216
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=40.58 E-value=2.1e+02 Score=23.71 Aligned_cols=99 Identities=14% Similarity=0.060 Sum_probs=49.7
Q ss_pred HHHHHhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHHHHHHhcCCCChHHHH
Q psy1202 21 MEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQA 100 (136)
Q Consensus 21 ~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (136)
.||+.+|+|+++.... . -.|+|+.-++-+-+...-.+.+.++. ..+|- +-++-+ +...+-....
T Consensus 238 feall~~~~~~~fg~p--------~--yagwgltddrl~~~~r~akrsl~qlf-yaay~----~y~ry~-np~~~~~~~l 301 (671)
T COG3563 238 FEALLCGKPLTTFGLP--------W--YAGWGLTDDRLEQTQRRAKRSLLQLF-YAAYL----QYSRYL-NPNTGEAGSL 301 (671)
T ss_pred HHHHhcCCceeeecch--------h--hcccCcchhHHHHHHhhhhhhHHHHH-HHHHH----HHHHhc-CCCccccchH
Confidence 7999999999997321 0 12455333321112222233333332 11222 223323 2223445567
Q ss_pred HHHHHHHHHcCCCCCCcc-cc--cCCChhhhhccCCCC
Q psy1202 101 VRWAEHVAANKGVLGYTP-AA--QQTSVMRLLEGPRFD 135 (136)
Q Consensus 101 ~~~ie~~~~~~~~~~l~~-~~--~~~~~~~~~~~d~~~ 135 (136)
.+.|++++..+....... .- ..+++|+.+-.+.|+
T Consensus 302 fd~id~lat~k~~~~~~~~~lf~vG~~~WKR~v~~pfF 339 (671)
T COG3563 302 FDVIDYLATVKRKNDKLRGELFCVGMSLWKRAVAKPFF 339 (671)
T ss_pred HHHHHHHHHHhccccCCCCceEEEehHHhhhhhhcccc
Confidence 788888887755443322 22 256777777666554
No 217
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=40.49 E-value=1.2e+02 Score=20.83 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=36.1
Q ss_pred hHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh---HHHHHHHHHHHH
Q psy1202 39 QHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP---RYRDTVGRLSKQ 88 (136)
Q Consensus 39 q~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~---~~~~~~~~~~~~ 88 (136)
+..|..+-++.|.-.++.-...+.+++...+++=+.|. +++..+.++.+.
T Consensus 102 ~~lN~~Y~~kFGfpFii~v~g~s~~~IL~~l~~Rl~n~~e~E~~~al~Ev~kI 154 (166)
T PRK13798 102 AAGNRAYEEKFGFVFLICATGRSADEMLAALQQRLHNDPETERKVVREELAKI 154 (166)
T ss_pred HHHHHHHHHhCCCeEEEeeCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 46699999999998777755558889999998888774 444444444443
No 218
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=39.49 E-value=51 Score=24.96 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=24.5
Q ss_pred CCccEEEeCCChhHHHHHHH----hCCCEEeecCC
Q psy1202 6 RNCKLFITHGGIHSSMEAVY----HGVPVVMMPGF 36 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~----~g~P~i~~P~~ 36 (136)
-+++.+|.-||-+|+.-+.. .++|++.+|-.
T Consensus 90 ~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkT 124 (301)
T TIGR02482 90 LGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGT 124 (301)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccc
Confidence 36788999999988865542 68999999953
No 219
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=39.07 E-value=77 Score=20.76 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHhcChHHHHHHHHHHHHHhc
Q psy1202 61 TGDILYITIREVLNNPRYRDTVGRLSKQVRS 91 (136)
Q Consensus 61 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 91 (136)
+++.+.+.++++|.+|..+..+........+
T Consensus 34 ~~~~l~~q~~RML~dpr~~~~~~~F~~qWL~ 64 (128)
T PF07631_consen 34 TPEQLRAQAERMLADPRARRFVERFFRQWLD 64 (128)
T ss_pred CHHHHHHHHHHHHcCccHHHHHHHHHHHHhC
Confidence 7899999999999999888888877766655
No 220
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=38.69 E-value=25 Score=25.22 Aligned_cols=24 Identities=8% Similarity=0.182 Sum_probs=18.4
Q ss_pred CccEEEeCCChhHHHHHHHhCCCE
Q psy1202 7 NCKLFITHGGIHSSMEAVYHGVPV 30 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~g~P~ 30 (136)
..-++|+|||...++=+...|.|.
T Consensus 175 ~~vlvVsHg~vir~ll~~~~~~~~ 198 (228)
T PRK14116 175 KNVIIAAHGNSLRALTKYIENISD 198 (228)
T ss_pred CeEEEEcChHHHHHHHHHHhCCCH
Confidence 345799999988888777787663
No 221
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=38.59 E-value=47 Score=21.83 Aligned_cols=34 Identities=24% Similarity=0.469 Sum_probs=27.6
Q ss_pred CCCCCCccEEEeCCChhHHHHHHHhCCCEEeecCC
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGF 36 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~ 36 (136)
++.||++-++||=|.--. .-++..|.|.|.+|=.
T Consensus 5 v~~~p~~pi~ItEG~kKA-~al~s~G~~aIalpGV 38 (130)
T PF12965_consen 5 VLDDPNIPIWITEGAKKA-GALLSQGYPAIALPGV 38 (130)
T ss_pred eecCCCccEEEEechHHH-HHHHcCCceEEEeCce
Confidence 578999999999988664 4457899999999953
No 222
>PRK10736 hypothetical protein; Provisional
Probab=38.01 E-value=1.2e+02 Score=23.88 Aligned_cols=52 Identities=13% Similarity=0.262 Sum_probs=36.2
Q ss_pred CCC-hhHHHHHHHhCCCEEeecCCc--ChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHH
Q psy1202 14 HGG-IHSSMEAVYHGVPVVMMPGFS--DQHQNCKLMEEKGMGLITPHETITGDILYITIR 70 (136)
Q Consensus 14 hgG-~~s~~Eal~~g~P~i~~P~~~--dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~ 70 (136)
++| ..|.-.|+..|.++.++|-.. ....-+..+-+.| +..+. +.+++.+.+.
T Consensus 230 kSGsliTA~~Al~~gR~VfavPG~i~~~~s~G~n~LI~~G-A~lv~----~~~Di~~~l~ 284 (374)
T PRK10736 230 RSGSLVTARCALEQGRDVFALPGPIGNPGSEGPHWLIKQG-AYLVT----SPEDILENLQ 284 (374)
T ss_pred CCchHHHHHHHHHhCCeEEEEcCCCCCccchhHHHHHHCC-CEEeC----CHHHHHHHhh
Confidence 445 677789999999999998543 3445566666778 44444 5677777664
No 223
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=37.69 E-value=32 Score=25.71 Aligned_cols=28 Identities=21% Similarity=0.263 Sum_probs=25.1
Q ss_pred CCccEEEeCCChhHHHHHHHhCCCEEee
Q psy1202 6 RNCKLFITHGGIHSSMEAVYHGVPVVMM 33 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~g~P~i~~ 33 (136)
-+-|++|+.++..+..-|-..|+|.+.+
T Consensus 92 ~~pDlVi~d~~~~~~~aA~~~~iP~i~i 119 (321)
T TIGR00661 92 YNPDLIISDFEYSTVVAAKLLKIPVICI 119 (321)
T ss_pred cCCCEEEECCchHHHHHHHhcCCCEEEE
Confidence 4569999999999999999999999976
No 224
>KOG1111|consensus
Probab=37.67 E-value=1.4e+02 Score=23.69 Aligned_cols=15 Identities=40% Similarity=0.501 Sum_probs=13.3
Q ss_pred HHHHHHHhCCCEEee
Q psy1202 19 SSMEAVYHGVPVVMM 33 (136)
Q Consensus 19 s~~Eal~~g~P~i~~ 33 (136)
++.||+++|.|++..
T Consensus 287 ~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 287 VIVEAASCGLPVVST 301 (426)
T ss_pred HHHHHHhCCCEEEEe
Confidence 578999999999986
No 225
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=37.60 E-value=1.4e+02 Score=20.67 Aligned_cols=31 Identities=23% Similarity=0.505 Sum_probs=23.2
Q ss_pred hCCCEEeecCCcC-------hHHHHHHHHHcCceeEcC
Q psy1202 26 HGVPVVMMPGFSD-------QHQNCKLMEEKGMGLITP 56 (136)
Q Consensus 26 ~g~P~i~~P~~~d-------q~~na~~~~~~G~g~~l~ 56 (136)
.++|+++.|-... -..|...+.+.|+-++-+
T Consensus 111 ~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P 148 (177)
T TIGR02113 111 PETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQP 148 (177)
T ss_pred CCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECC
Confidence 3799999995432 256889999999877655
No 226
>PRK13055 putative lipid kinase; Reviewed
Probab=37.60 E-value=47 Score=25.30 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=22.8
Q ss_pred CccEEEeCCChhHHHHHHHh------CCCEEeecC
Q psy1202 7 NCKLFITHGGIHSSMEAVYH------GVPVVMMPG 35 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~------g~P~i~~P~ 35 (136)
..+++|.-||=||+.|++.. ..|+-++|.
T Consensus 59 ~~d~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 59 GFDLIIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 46889999999999998743 356777885
No 227
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=36.75 E-value=30 Score=24.73 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=17.5
Q ss_pred ccEEEeCCChhHHHHHHHhCCC
Q psy1202 8 CKLFITHGGIHSSMEAVYHGVP 29 (136)
Q Consensus 8 ~~~~I~hgG~~s~~Eal~~g~P 29 (136)
.-++|+|||...++=+...|.|
T Consensus 176 ~vlvVsHg~vir~l~~~~~~~~ 197 (228)
T PRK14119 176 TVLVSAHGNSIRALIKYLEDVS 197 (228)
T ss_pred eEEEEeChHHHHHHHHHHhCCC
Confidence 4579999998888777777766
No 228
>PRK13463 phosphatase PhoE; Provisional
Probab=36.48 E-value=31 Score=24.10 Aligned_cols=23 Identities=13% Similarity=0.392 Sum_probs=17.8
Q ss_pred ccEEEeCCChhHHHHHHHhCCCE
Q psy1202 8 CKLFITHGGIHSSMEAVYHGVPV 30 (136)
Q Consensus 8 ~~~~I~hgG~~s~~Eal~~g~P~ 30 (136)
.-++|+|||....+-+...|.|.
T Consensus 145 ~vlvVsHg~~ir~~~~~~~~~~~ 167 (203)
T PRK13463 145 SILIVSHAAAAKLLVGHFAGIEI 167 (203)
T ss_pred EEEEEeChHHHHHHHHHHhCCCH
Confidence 44789999988877777777664
No 229
>PRK13337 putative lipid kinase; Reviewed
Probab=36.22 E-value=51 Score=24.62 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=23.1
Q ss_pred CCccEEEeCCChhHHHHHHHh------CCCEEeecC
Q psy1202 6 RNCKLFITHGGIHSSMEAVYH------GVPVVMMPG 35 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~~------g~P~i~~P~ 35 (136)
+..+++|.-||=||+.|++.. ..|+-++|.
T Consensus 56 ~~~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 56 RKFDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred cCCCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 346899999999999998752 246777785
No 230
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=35.54 E-value=63 Score=24.74 Aligned_cols=31 Identities=29% Similarity=0.281 Sum_probs=24.8
Q ss_pred CCccEEEeCCChhHHHHHHH---hCCCEEeecCC
Q psy1202 6 RNCKLFITHGGIHSSMEAVY---HGVPVVMMPGF 36 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~---~g~P~i~~P~~ 36 (136)
-+++.+|.-||-+|+.-+.. .|+|+|.+|-.
T Consensus 93 ~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkT 126 (324)
T TIGR02483 93 LGLDALIAIGGDGTLGIARRLADKGLPVVGVPKT 126 (324)
T ss_pred cCCCEEEEECCchHHHHHHHHHhcCCCEEeeccc
Confidence 46788999999988866643 59999999964
No 231
>PRK03202 6-phosphofructokinase; Provisional
Probab=35.53 E-value=65 Score=24.64 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=24.8
Q ss_pred CCccEEEeCCChhHHHHHHH---hCCCEEeecCC
Q psy1202 6 RNCKLFITHGGIHSSMEAVY---HGVPVVMMPGF 36 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~---~g~P~i~~P~~ 36 (136)
-+.+.+|.-||-+|+.-+.. .++|+|.+|-.
T Consensus 92 ~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkT 125 (320)
T PRK03202 92 LGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGT 125 (320)
T ss_pred cCCCEEEEeCChHHHHHHHHHHhcCCcEEEeccc
Confidence 46788999999988866644 49999999953
No 232
>KOG3125|consensus
Probab=35.12 E-value=65 Score=23.22 Aligned_cols=49 Identities=27% Similarity=0.439 Sum_probs=34.6
Q ss_pred ccEEEeCCChh---------HHH-----HHHHhCCCEEee---cCCcChHHHHHHHHH-cCceeEcC
Q psy1202 8 CKLFITHGGIH---------SSM-----EAVYHGVPVVMM---PGFSDQHQNCKLMEE-KGMGLITP 56 (136)
Q Consensus 8 ~~~~I~hgG~~---------s~~-----Eal~~g~P~i~~---P~~~dq~~na~~~~~-~G~g~~l~ 56 (136)
++.+.||.|.. +.. +++...+-+|.+ -+++||++.++.+++ .|--+++.
T Consensus 71 ~~si~Thdg~~~~c~~lp~a~~~s~f~~d~~~~~vdVigIDEaQFf~dl~efc~evAd~~Gk~Viva 137 (234)
T KOG3125|consen 71 SSSIVTHDGIEMPCWALPDASFLSEFGKDALNGDVDVIGIDEAQFFGDLYEFCREVADVHGKTVIVA 137 (234)
T ss_pred hheeEeccCCcccccccCCchhHHHHHHHHhcCcceEEEecHHHHhHHHHHHHHHHHhccCCEEEEE
Confidence 36789999873 222 244445777777 367899999999988 78776654
No 233
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=35.01 E-value=43 Score=23.28 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=17.0
Q ss_pred ccEEEeCCChhHHHHHHHhCCCE
Q psy1202 8 CKLFITHGGIHSSMEAVYHGVPV 30 (136)
Q Consensus 8 ~~~~I~hgG~~s~~Eal~~g~P~ 30 (136)
.-++|+|||....+=+...|.|.
T Consensus 146 ~vliVsHg~~ir~ll~~~lg~~~ 168 (204)
T TIGR03848 146 VWVACSHGDVIKSVLADALGMHL 168 (204)
T ss_pred EEEEEeCChHHHHHHHHHhCCCH
Confidence 34699999987777666777664
No 234
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=34.95 E-value=52 Score=24.78 Aligned_cols=30 Identities=23% Similarity=0.552 Sum_probs=21.9
Q ss_pred CCccEEEeCCChhHHHHHH-----Hh--CCCEEeecCC
Q psy1202 6 RNCKLFITHGGIHSSMEAV-----YH--GVPVVMMPGF 36 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal-----~~--g~P~i~~P~~ 36 (136)
.++|++|.=||. |++... .. |+|+|.+|..
T Consensus 77 ~~~d~IIaiGGG-s~~D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 77 AEVDAVIAVGGG-STLDTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred cCcCEEEEeCCc-hHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 467899999985 454432 23 9999999974
No 235
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=34.83 E-value=73 Score=16.67 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHhcC-hHHHHHHHHH
Q psy1202 61 TGDILYITIREVLNN-PRYRDTVGRL 85 (136)
Q Consensus 61 ~~~~l~~~i~~ll~~-~~~~~~~~~~ 85 (136)
+++++..+|..+.++ -++++.+++.
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 367899999999877 5666665553
No 236
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=34.32 E-value=1.8e+02 Score=23.99 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCccEEEeCCChh------HHHHHHHhCCCEEeec
Q psy1202 6 RNCKLFITHGGIH------SSMEAVYHGVPVVMMP 34 (136)
Q Consensus 6 ~~~~~~I~hgG~~------s~~Eal~~g~P~i~~P 34 (136)
.+..++++|.|.| .+.+|...++|+|.+.
T Consensus 67 g~~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 67 GRMGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCCEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3456778887754 3578889999999994
No 237
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=34.14 E-value=74 Score=22.66 Aligned_cols=40 Identities=23% Similarity=0.417 Sum_probs=23.2
Q ss_pred CChhHHHHHHHhCCCEEeecCC--cChHHHHHHHHHcCceeEc
Q psy1202 15 GGIHSSMEAVYHGVPVVMMPGF--SDQHQNCKLMEEKGMGLIT 55 (136)
Q Consensus 15 gG~~s~~Eal~~g~P~i~~P~~--~dq~~na~~~~~~G~g~~l 55 (136)
|...|+-.|+..|+|+.++|-. .+...-...+-+.| +..+
T Consensus 169 Gt~~ta~~A~~~gr~v~~vp~~~~~~~~~G~~~Li~~G-A~~v 210 (212)
T PF02481_consen 169 GTLHTARFALEQGRPVFAVPGPIDDPNSEGNNELIKEG-AKLV 210 (212)
T ss_dssp THHHHHHHHHHHT--EEE----TT-GGGHHHHHHHHTT--EE-
T ss_pred hHHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHcC-CEee
Confidence 3477888999999999999754 34566667777777 4433
No 238
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=34.13 E-value=2.3e+02 Score=23.33 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=21.4
Q ss_pred CccEEEeCCChh------HHHHHHHhCCCEEeec
Q psy1202 7 NCKLFITHGGIH------SSMEAVYHGVPVVMMP 34 (136)
Q Consensus 7 ~~~~~I~hgG~~------s~~Eal~~g~P~i~~P 34 (136)
+..++++|.|.| .+.+|...++|+|.+.
T Consensus 63 ~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 63 KVGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 456677776644 5689999999999983
No 239
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=33.98 E-value=33 Score=24.52 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=17.2
Q ss_pred ccEEEeCCChhHHHHHHHhCCCE
Q psy1202 8 CKLFITHGGIHSSMEAVYHGVPV 30 (136)
Q Consensus 8 ~~~~I~hgG~~s~~Eal~~g~P~ 30 (136)
.-++|+|||...++=+...|.|.
T Consensus 175 ~vlvVsHggvir~ll~~~l~~~~ 197 (227)
T PRK14118 175 RVLVAAHGNSLRALAKHIEGISD 197 (227)
T ss_pred eEEEEeCHHHHHHHHHHHhCCCH
Confidence 44689999987777777777664
No 240
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=33.47 E-value=35 Score=22.92 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=16.4
Q ss_pred ccEEEeCCChhHHHHHHHhCCC
Q psy1202 8 CKLFITHGGIHSSMEAVYHGVP 29 (136)
Q Consensus 8 ~~~~I~hgG~~s~~Eal~~g~P 29 (136)
.-++|+|||....+-+...|.|
T Consensus 139 ~vlvVsHg~~i~~l~~~~~~~~ 160 (177)
T TIGR03162 139 NVLIVTHGGVIRALLAHLLGLP 160 (177)
T ss_pred eEEEEECHHHHHHHHHHHhCCC
Confidence 4468999998877777666655
No 241
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=32.99 E-value=80 Score=16.59 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHhcChHHHHHHHHH
Q psy1202 61 TGDILYITIREVLNNPRYRDTVGRL 85 (136)
Q Consensus 61 ~~~~l~~~i~~ll~~~~~~~~~~~~ 85 (136)
+.+.+.+.+.++-+|++++++....
T Consensus 2 S~~~l~~Fl~~~~~d~~l~~~l~~~ 26 (49)
T PF07862_consen 2 SIESLKAFLEKVKSDPELREQLKAC 26 (49)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHhc
Confidence 3567888899999999999988773
No 242
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=32.76 E-value=62 Score=25.68 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=24.0
Q ss_pred CCCccEEEeCCChhHHHHHHH-------h--CCCEEeecC
Q psy1202 5 HRNCKLFITHGGIHSSMEAVY-------H--GVPVVMMPG 35 (136)
Q Consensus 5 h~~~~~~I~hgG~~s~~Eal~-------~--g~P~i~~P~ 35 (136)
.-.++.+|.-||-+|..-|.. . ++|+|.+|-
T Consensus 110 ~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPk 149 (403)
T PRK06555 110 ADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPK 149 (403)
T ss_pred HcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeee
Confidence 346888999999888755533 2 799999994
No 243
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=32.19 E-value=37 Score=24.34 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=18.0
Q ss_pred CccEEEeCCChhHHHHHHHhCCCE
Q psy1202 7 NCKLFITHGGIHSSMEAVYHGVPV 30 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~g~P~ 30 (136)
..-++|+|||...++=+...|.|.
T Consensus 175 ~~vlvVsHg~~ir~ll~~~lg~~~ 198 (230)
T PRK14117 175 KNVFVGAHGNSIRALVKHIKGLSD 198 (230)
T ss_pred CEEEEEeChHHHHHHHHHHhCcCH
Confidence 344799999988777777777663
No 244
>PF14350 Beta_protein: Beta protein
Probab=32.05 E-value=58 Score=24.85 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=25.5
Q ss_pred CEEeecCCcChHHHHHHHH---HcCceeEcCCCCCCHHHHHHHHHHHh
Q psy1202 29 PVVMMPGFSDQHQNCKLME---EKGMGLITPHETITGDILYITIREVL 73 (136)
Q Consensus 29 P~i~~P~~~dq~~na~~~~---~~G~g~~l~~~~~~~~~l~~~i~~ll 73 (136)
|++.+....+.......+. ..|+++.+..+.+..+++...|..++
T Consensus 99 PVi~l~~~~~~~~~v~~~~~~~~~~iaiRl~~~~~~~~~~~~~i~~i~ 146 (347)
T PF14350_consen 99 PVIGLDRSDDYLRAVRSIARRNGGGIAIRLRPDDLDDDDFPSEISRIL 146 (347)
T ss_pred EEEecCCcHHHHHHHHHHHHhcCCeEEEEeecccccchhHHHHHHHHH
Confidence 5555543333333334343 46788888876665555666666665
No 245
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=31.58 E-value=60 Score=25.20 Aligned_cols=30 Identities=27% Similarity=0.551 Sum_probs=22.0
Q ss_pred CCccEEEeCCChhHHHHHH-------------------------HhCCCEEeecCC
Q psy1202 6 RNCKLFITHGGIHSSMEAV-------------------------YHGVPVVMMPGF 36 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal-------------------------~~g~P~i~~P~~ 36 (136)
.++|++|.=||. |++.+. ..++|+|.+|..
T Consensus 85 ~~~D~IiaiGGG-SviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 85 SGADYLIAIGGG-SPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred cCCCEEEEeCCh-HHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 467899999884 566554 135899999975
No 246
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=31.55 E-value=92 Score=17.51 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcChHHHHHHHHH
Q psy1202 63 DILYITIREVLNNPRYRDTVGRL 85 (136)
Q Consensus 63 ~~l~~~i~~ll~~~~~~~~~~~~ 85 (136)
+.+...+.++.+|++++++.+..
T Consensus 2 e~l~~Fl~~~~~d~~L~~~l~~~ 24 (64)
T TIGR03798 2 EQLKAFLEKVKTDPDLREKLKAA 24 (64)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHc
Confidence 46778888999999999888773
No 247
>PRK05920 aromatic acid decarboxylase; Validated
Probab=31.43 E-value=1e+02 Score=22.01 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=26.5
Q ss_pred HHHHhCCCEEeecCCc-C---hHHHHHHHHHcCceeEcC
Q psy1202 22 EAVYHGVPVVMMPGFS-D---QHQNCKLMEEKGMGLITP 56 (136)
Q Consensus 22 Eal~~g~P~i~~P~~~-d---q~~na~~~~~~G~g~~l~ 56 (136)
+++..++|+++.|... . ...|...+.+.|+-+.-+
T Consensus 125 ~~L~~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~ii~P 163 (204)
T PRK05920 125 VVLKERRKLILVPRETPLSLIHLENMLKLAEAGAIILPA 163 (204)
T ss_pred HHHhcCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEeCC
Confidence 4577899999999732 2 257899999998887554
No 248
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=31.31 E-value=50 Score=24.90 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=18.5
Q ss_pred ccEEEeCCChhHHHHHHHhCCCE
Q psy1202 8 CKLFITHGGIHSSMEAVYHGVPV 30 (136)
Q Consensus 8 ~~~~I~hgG~~s~~Eal~~g~P~ 30 (136)
.-++|+|||...++=+...|.|.
T Consensus 234 ~vLVVsHGgvIR~ll~~lLglp~ 256 (299)
T PTZ00122 234 VEIIVCHGNVIRYLVCRALQLPP 256 (299)
T ss_pred eEEEEeCChHHHHHHHHHhCcCH
Confidence 45899999988888887887764
No 249
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=31.28 E-value=57 Score=22.43 Aligned_cols=30 Identities=10% Similarity=0.282 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhc
Q psy1202 40 HQNCKLMEEKGMGLITPHETITGDILYITIREVLN 74 (136)
Q Consensus 40 ~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~ 74 (136)
...+.+=+..|+|+.+ |++++.+++...++
T Consensus 102 ~d~~~Fe~~cGVGV~V-----T~E~I~~~V~~~i~ 131 (164)
T PF04558_consen 102 IDVAEFEKACGVGVVV-----TPEQIEAAVEKYIE 131 (164)
T ss_dssp --HHHHHHTTTTT---------HHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCeEE-----CHHHHHHHHHHHHH
Confidence 3444555568999988 58999999999985
No 250
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=31.03 E-value=81 Score=24.07 Aligned_cols=30 Identities=37% Similarity=0.593 Sum_probs=24.1
Q ss_pred CCccEEEeCCChhHHHHHHH---hCCCEEeecC
Q psy1202 6 RNCKLFITHGGIHSSMEAVY---HGVPVVMMPG 35 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~---~g~P~i~~P~ 35 (136)
-+++.+|.-||-+|+.-+.. .|+|+|.+|-
T Consensus 91 ~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPk 123 (317)
T cd00763 91 HGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPG 123 (317)
T ss_pred cCCCEEEEECCchHHHHHHHHHHcCCCEEEecc
Confidence 46788999999888766643 4899999995
No 251
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=30.70 E-value=71 Score=24.31 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=23.0
Q ss_pred CCccEEEeCCChhHHHHH-----HHhCCCEEeecCCc
Q psy1202 6 RNCKLFITHGGIHSSMEA-----VYHGVPVVMMPGFS 37 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Ea-----l~~g~P~i~~P~~~ 37 (136)
.++|++|.=||. |++.. ...++|+|.+|...
T Consensus 76 ~~~d~IIaiGGG-s~iD~aK~ia~~~~~p~i~IPTta 111 (337)
T cd08177 76 AGADGIVAIGGG-STIDLAKAIALRTGLPIIAIPTTL 111 (337)
T ss_pred cCCCEEEEeCCc-HHHHHHHHHHHHhcCCEEEEcCCc
Confidence 467899999884 46554 33489999999753
No 252
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=30.64 E-value=1.9e+02 Score=20.10 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=26.8
Q ss_pred HHHHhCCCEEeecCCc----ChHHHHHHHHHcCceeEcC
Q psy1202 22 EAVYHGVPVVMMPGFS----DQHQNCKLMEEKGMGLITP 56 (136)
Q Consensus 22 Eal~~g~P~i~~P~~~----dq~~na~~~~~~G~g~~l~ 56 (136)
.++..++|+++.|... -+..|...+.+.|+-+.-+
T Consensus 107 ~~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii~P 145 (181)
T TIGR00421 107 VCLKERRKLVLVPRETPLNSIHLENMLRLSRMGAIILPP 145 (181)
T ss_pred HHHhcCCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEECC
Confidence 3577899999999532 2467888999999887655
No 253
>PRK01112 phosphoglyceromutase; Provisional
Probab=30.56 E-value=41 Score=24.18 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=18.7
Q ss_pred CccEEEeCCChhHHHHHHHhCCCE
Q psy1202 7 NCKLFITHGGIHSSMEAVYHGVPV 30 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~g~P~ 30 (136)
..-++|+|||...++-+...+.|.
T Consensus 174 ~~ilVVsHg~vir~l~~~ll~~~~ 197 (228)
T PRK01112 174 KNVFVSAHGNSLRSLIMDLEKLSE 197 (228)
T ss_pred CeEEEEeCHHHHHHHHHHHhCCCH
Confidence 456788999988888888887665
No 254
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=30.04 E-value=42 Score=23.24 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=17.5
Q ss_pred ccEEEeCCChhHHHHHHHhCCCE
Q psy1202 8 CKLFITHGGIHSSMEAVYHGVPV 30 (136)
Q Consensus 8 ~~~~I~hgG~~s~~Eal~~g~P~ 30 (136)
.-++|+|||....+=+...|.|.
T Consensus 143 ~iliVsHg~~i~~l~~~~~~~~~ 165 (199)
T PRK15004 143 NLLIVSHQGVLSLLIARLLGMPA 165 (199)
T ss_pred eEEEEcChHHHHHHHHHHhCCCH
Confidence 45689999987777777777664
No 255
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=29.68 E-value=1.5e+02 Score=20.50 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=11.9
Q ss_pred HHHHHhCCCEEeecCC
Q psy1202 21 MEAVYHGVPVVMMPGF 36 (136)
Q Consensus 21 ~Eal~~g~P~i~~P~~ 36 (136)
.+++-.++|+++.|..
T Consensus 109 ~~~lk~~~pvvi~P~m 124 (174)
T TIGR02699 109 IQAAKAKVPVYIMPSD 124 (174)
T ss_pred HHHhccCCCEEEEECc
Confidence 3444569999999974
No 256
>PF03592 Terminase_2: Terminase small subunit ; InterPro: IPR005335 Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].; GO: 0006323 DNA packaging; PDB: 3ZQP_B 2CMP_A 3ZQO_C 3ZQN_B 3ZQQ_B 3ZQM_D.
Probab=29.59 E-value=1.7e+02 Score=19.18 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc
Q psy1202 63 DILYITIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAAN 110 (136)
Q Consensus 63 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~ 110 (136)
......--++|.||..++...++......+..-..+.+...+..+...
T Consensus 30 ktA~~~asrLL~n~~V~~~I~~~~~e~~~~~~~t~~~vl~~l~~ia~~ 77 (144)
T PF03592_consen 30 KTARANASRLLRNPKVKAYIEELMKEREERAIITADEVLEELTEIAFG 77 (144)
T ss_dssp TTHHHHHHHHTTSHHHHHHHHHHHHHHSSS-S--HHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 335566678999999999999998888876444556666666666544
No 257
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=29.37 E-value=1.9e+02 Score=19.67 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=35.1
Q ss_pred hHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh---HHHHHHHHHHH
Q psy1202 39 QHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP---RYRDTVGRLSK 87 (136)
Q Consensus 39 q~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~---~~~~~~~~~~~ 87 (136)
+..|..+-++.|.-.++.-...+.+++...+++-+.|. +.+....++.+
T Consensus 97 ~~lN~~Y~~kFGfpFvi~v~g~~~~~Il~~l~~Rl~n~~~~E~~~a~~Ev~k 148 (157)
T TIGR03164 97 TRLNNAYRARFGFPFIMAVKGKTKQSILAAFEARLNNDRETEFARALREIER 148 (157)
T ss_pred HHHHHHHHHHCCCeeEEeeCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35689999999998777755568899999998888774 34444444433
No 258
>PRK08322 acetolactate synthase; Reviewed
Probab=29.26 E-value=2.6e+02 Score=22.75 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=22.4
Q ss_pred CCccEEEeCCChh------HHHHHHHhCCCEEeec
Q psy1202 6 RNCKLFITHGGIH------SSMEAVYHGVPVVMMP 34 (136)
Q Consensus 6 ~~~~~~I~hgG~~------s~~Eal~~g~P~i~~P 34 (136)
.+..++++|.|.| .+.||...++|+|++.
T Consensus 62 g~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 62 GKAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 4566778777654 4689999999999983
No 259
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=29.26 E-value=43 Score=25.02 Aligned_cols=30 Identities=30% Similarity=0.382 Sum_probs=24.0
Q ss_pred CCccEEEeCCChhHHHHHHH----hCCCEEeecC
Q psy1202 6 RNCKLFITHGGIHSSMEAVY----HGVPVVMMPG 35 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~----~g~P~i~~P~ 35 (136)
-.++.+|.-||-+|+..+.. .++|+|.+|-
T Consensus 91 ~~Id~Li~IGG~gs~~~a~~L~~~~~i~vigiPk 124 (282)
T PF00365_consen 91 LGIDALIVIGGDGSMKGAHKLSEEFGIPVIGIPK 124 (282)
T ss_dssp TTESEEEEEESHHHHHHHHHHHHHHHSEEEEEEE
T ss_pred hCCCEEEEecCCCHHHHHHHHHhcCceEEEEEec
Confidence 46788999999998876653 4599999995
No 260
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=29.19 E-value=2.6e+02 Score=22.02 Aligned_cols=28 Identities=25% Similarity=0.517 Sum_probs=21.6
Q ss_pred CCccEEEeCCChh------HHHHHHHhCCCEEee
Q psy1202 6 RNCKLFITHGGIH------SSMEAVYHGVPVVMM 33 (136)
Q Consensus 6 ~~~~~~I~hgG~~------s~~Eal~~g~P~i~~ 33 (136)
.+..+++++.|.| .+.||...++|+|++
T Consensus 62 g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 62 GRPVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CCCEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 3456777777755 457899999999999
No 261
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=29.16 E-value=2.3e+02 Score=23.11 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=37.1
Q ss_pred HHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh--HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy1202 43 CKLMEEKGMGLITPHETITGDILYITIREVLNNP--RYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVA 108 (136)
Q Consensus 43 a~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~ 108 (136)
|-..+..+-++.+++ .+.++++++|.+.|+-+ +-+++.+++.+.+... .+..|.+.++
T Consensus 389 AGaA~~L~~AllVNP--~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~------dv~~W~~~fL 448 (474)
T PRK10117 389 AGAANELTSALIVNP--YDRDEVAAALDRALTMPLAERISRHAEMLDVIVKN------DINHWQECFI 448 (474)
T ss_pred cchHHHhCCCeEECC--CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhC------CHHHHHHHHH
Confidence 333444455777874 47799999999999764 5566666666666552 3345555443
No 262
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=29.07 E-value=74 Score=24.44 Aligned_cols=30 Identities=33% Similarity=0.501 Sum_probs=22.0
Q ss_pred CCccEEEeCCChhHHHHHHH----------------------hCCCEEeecCC
Q psy1202 6 RNCKLFITHGGIHSSMEAVY----------------------HGVPVVMMPGF 36 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~----------------------~g~P~i~~P~~ 36 (136)
.++|++|.=||. |++.+.- .++|+|.+|..
T Consensus 82 ~~~D~IIavGGG-SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 82 FNADFVIGIGGG-SPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred cCCCEEEEeCCc-hHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 467899999885 4665542 26899999975
No 263
>PRK14071 6-phosphofructokinase; Provisional
Probab=28.51 E-value=96 Score=24.13 Aligned_cols=31 Identities=23% Similarity=0.156 Sum_probs=23.6
Q ss_pred CCccEEEeCCChhHHHHHHH----hCCCEEeecCC
Q psy1202 6 RNCKLFITHGGIHSSMEAVY----HGVPVVMMPGF 36 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~----~g~P~i~~P~~ 36 (136)
-+++.+|.-||-+|+.-+.. .++|+|.+|-.
T Consensus 106 ~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkT 140 (360)
T PRK14071 106 LGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKT 140 (360)
T ss_pred cCCCEEEEECChhHHHHHHHHHHhcCCcEEEeccc
Confidence 36788999999888744422 39999999953
No 264
>PRK01295 phosphoglyceromutase; Provisional
Probab=28.31 E-value=46 Score=23.39 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=18.3
Q ss_pred CccEEEeCCChhHHHHHHHhCCCE
Q psy1202 7 NCKLFITHGGIHSSMEAVYHGVPV 30 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~g~P~ 30 (136)
..-++|+|||....+-+...+.|.
T Consensus 151 ~~vliVtHg~~ir~l~~~~l~~~~ 174 (206)
T PRK01295 151 ERVLVAAHGNSLRALVMVLDGLTP 174 (206)
T ss_pred CeEEEEcChHHHHHHHHHHhCCCH
Confidence 345799999988777777777774
No 265
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=28.00 E-value=2.1e+02 Score=23.32 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=21.2
Q ss_pred CccEEEeCCChh------HHHHHHHhCCCEEee
Q psy1202 7 NCKLFITHGGIH------SSMEAVYHGVPVVMM 33 (136)
Q Consensus 7 ~~~~~I~hgG~~------s~~Eal~~g~P~i~~ 33 (136)
+..++++|.|.| .+.||...++|+|++
T Consensus 64 ~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i 96 (558)
T TIGR00118 64 KVGVVLVTSGPGATNLVTGIATAYMDSIPMVVF 96 (558)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEE
Confidence 455777777654 468999999999998
No 266
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=27.89 E-value=2.9e+02 Score=22.33 Aligned_cols=58 Identities=10% Similarity=-0.049 Sum_probs=42.4
Q ss_pred CCChhHHHHHHHhCCCEEeecCC-c-ChHHHHHHHHHc-CceeEcCCCCCCHHHHHHHHHHH
Q psy1202 14 HGGIHSSMEAVYHGVPVVMMPGF-S-DQHQNCKLMEEK-GMGLITPHETITGDILYITIREV 72 (136)
Q Consensus 14 hgG~~s~~Eal~~g~P~i~~P~~-~-dq~~na~~~~~~-G~g~~l~~~~~~~~~l~~~i~~l 72 (136)
.-|..++.+.+-...|+|..|.. + --...+..+.+. |+|.+-. ...+++++.+.|+++
T Consensus 5 ~lg~~~f~~~lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lga-g~l~~e~l~~~I~~i 65 (444)
T TIGR02814 5 SLGSAAFREDYGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGA-GGLPLEEVEQAIHRI 65 (444)
T ss_pred hcCChHHHHHhCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCC-CCCCHHHHHHHHHHH
Confidence 34777889999889999999986 2 445566666665 5665553 456888888888777
No 267
>PRK00861 putative lipid kinase; Reviewed
Probab=27.70 E-value=89 Score=23.20 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=22.9
Q ss_pred CccEEEeCCChhHHHHHHH----hCCCEEeecC
Q psy1202 7 NCKLFITHGGIHSSMEAVY----HGVPVVMMPG 35 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~----~g~P~i~~P~ 35 (136)
..+++|.-||=||+.|++. .++|+-++|.
T Consensus 57 ~~d~vv~~GGDGTl~evv~~l~~~~~~lgviP~ 89 (300)
T PRK00861 57 GAELIIASGGDGTLSAVAGALIGTDIPLGIIPR 89 (300)
T ss_pred CCCEEEEECChHHHHHHHHHHhcCCCcEEEEcC
Confidence 4578999999999999863 3567777886
No 268
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=27.56 E-value=50 Score=23.81 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=16.4
Q ss_pred ccEEEeCCChhHHHHHHHhCCC
Q psy1202 8 CKLFITHGGIHSSMEAVYHGVP 29 (136)
Q Consensus 8 ~~~~I~hgG~~s~~Eal~~g~P 29 (136)
.-++|+|||...++=+...+.|
T Consensus 163 ~vliVsHG~vir~ll~~l~~~~ 184 (236)
T PTZ00123 163 KVLVAAHGNSLRALVKYLDKMS 184 (236)
T ss_pred eEEEEeCHHHHHHHHHHHhCCC
Confidence 3479999998777766666655
No 269
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=27.51 E-value=2.1e+02 Score=19.61 Aligned_cols=84 Identities=14% Similarity=0.226 Sum_probs=46.0
Q ss_pred CccEEEeCCChhHHH---HHHHhCCCEEeecCCcCh---HHHHHHHHH--cC--ceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 7 NCKLFITHGGIHSSM---EAVYHGVPVVMMPGFSDQ---HQNCKLMEE--KG--MGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~---Eal~~g~P~i~~P~~~dq---~~na~~~~~--~G--~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
..++||.-+|...-+ =+...-+|+|.+|....- .+-.--+.+ .| ++.+.-.+..+..-+...|..+ .|+
T Consensus 53 g~~viIa~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~vqmP~gvpvatv~I~~~~nAa~~AaqIl~~-~d~ 131 (156)
T TIGR01162 53 GIKVIIAGAGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNAGNAALLAAQILGI-KDP 131 (156)
T ss_pred CCeEEEEeCCccchhHHHHHhccCCCEEEecCCccCCCCHHHHHHHhcCCCCCeeEEEEcCChhHHHHHHHHHHcC-CCH
Confidence 468899887743222 234567999999985321 111122333 35 3322222233444455544443 688
Q ss_pred HHHHHHHHHHHHHhc
Q psy1202 77 RYRDTVGRLSKQVRS 91 (136)
Q Consensus 77 ~~~~~~~~~~~~~~~ 91 (136)
+++++.+..+.....
T Consensus 132 ~l~~kl~~~r~~~~~ 146 (156)
T TIGR01162 132 ELAEKLKEYRENQKE 146 (156)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877665543
No 270
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=27.29 E-value=74 Score=25.75 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=26.0
Q ss_pred CCCCCCccEEEeCCChhHHHHHHHhCCCEEee
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMM 33 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~~g~P~i~~ 33 (136)
|+.|+.++.++-.||......+...++|++..
T Consensus 182 L~~~~~vd~V~fTGs~~v~~~a~~~~~pv~~e 213 (488)
T TIGR02518 182 LMKNKDTSLILATGGEAMVKAAYSSGTPAIGV 213 (488)
T ss_pred HHhCCCcCEEEEeCCHHHHHHHHHcCCCEEEE
Confidence 56899999999999988665565689999864
No 271
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=27.22 E-value=2.6e+02 Score=22.97 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=22.1
Q ss_pred CCccEEEeCCChhH------HHHHHHhCCCEEee
Q psy1202 6 RNCKLFITHGGIHS------SMEAVYHGVPVVMM 33 (136)
Q Consensus 6 ~~~~~~I~hgG~~s------~~Eal~~g~P~i~~ 33 (136)
.+..++++|.|.|. +.+|...++|+|++
T Consensus 66 g~~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i 99 (574)
T PRK07979 66 GEVGVVLVTSGPGATNAITGIATAYMDSIPLVVL 99 (574)
T ss_pred CCceEEEECCCccHhhhHHHHHHHhhcCCCEEEE
Confidence 45667788877654 57999999999998
No 272
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=27.07 E-value=2.6e+02 Score=22.92 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=21.8
Q ss_pred CCccEEEeCCChh------HHHHHHHhCCCEEeec
Q psy1202 6 RNCKLFITHGGIH------SSMEAVYHGVPVVMMP 34 (136)
Q Consensus 6 ~~~~~~I~hgG~~------s~~Eal~~g~P~i~~P 34 (136)
.+..++++|.|.| .+.||...++|+|++.
T Consensus 67 g~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 67 GVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 3455777776644 3589999999999984
No 273
>PRK03482 phosphoglycerate mutase; Provisional
Probab=27.06 E-value=57 Score=22.86 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=16.7
Q ss_pred cEEEeCCChhHHHHHHHhCCCE
Q psy1202 9 KLFITHGGIHSSMEAVYHGVPV 30 (136)
Q Consensus 9 ~~~I~hgG~~s~~Eal~~g~P~ 30 (136)
-++|+|||...++=+...|.|.
T Consensus 145 vliVsHg~~i~~l~~~l~~~~~ 166 (215)
T PRK03482 145 PLLVSHGIALGCLVSTILGLPA 166 (215)
T ss_pred EEEEeCcHHHHHHHHHHhCCCh
Confidence 4799999987777777777664
No 274
>PRK07524 hypothetical protein; Provisional
Probab=26.71 E-value=3.5e+02 Score=21.96 Aligned_cols=28 Identities=11% Similarity=0.148 Sum_probs=21.5
Q ss_pred CCccEEEeCCChh------HHHHHHHhCCCEEee
Q psy1202 6 RNCKLFITHGGIH------SSMEAVYHGVPVVMM 33 (136)
Q Consensus 6 ~~~~~~I~hgG~~------s~~Eal~~g~P~i~~ 33 (136)
.+..+++.|.|.| .+.+|...++|+|++
T Consensus 63 g~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i 96 (535)
T PRK07524 63 GKPGVCFIITGPGMTNIATAMGQAYADSIPMLVI 96 (535)
T ss_pred CCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 3456777777755 458899999999998
No 275
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=26.65 E-value=2.1e+02 Score=22.47 Aligned_cols=65 Identities=23% Similarity=0.329 Sum_probs=36.2
Q ss_pred CCCCCCccEEEeC--CChh---HHHHHHH-------hCCCEEeecCCcChHHHHHH-HHHcCceeEcCCCCCCHHHHHHH
Q psy1202 2 PTGHRNCKLFITH--GGIH---SSMEAVY-------HGVPVVMMPGFSDQHQNCKL-MEEKGMGLITPHETITGDILYIT 68 (136)
Q Consensus 2 ~L~h~~~~~~I~h--gG~~---s~~Eal~-------~g~P~i~~P~~~dq~~na~~-~~~~G~g~~l~~~~~~~~~l~~~ 68 (136)
++..|++++++.+ ||.. .+.+++. .++|+ ++.+.+.....+++ +.+.|+.+... +++.++
T Consensus 305 ll~Dp~VdaVlv~i~ggi~~~~~vA~~Ii~a~~~~~~~kPv-vv~l~G~~~e~~~~iL~~~Gipvf~~------~~~~~a 377 (392)
T PRK14046 305 VLSDRNVKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPL-VVRLAGTNVEEGRKILAESGLPIITA------DTLAEA 377 (392)
T ss_pred HHcCCCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCcE-EEEcCCCCHHHHHHHHHHcCCCeeec------CCHHHH
Confidence 4667888886632 3322 2344433 57898 44555545555555 67778766544 345555
Q ss_pred HHHHh
Q psy1202 69 IREVL 73 (136)
Q Consensus 69 i~~ll 73 (136)
++++.
T Consensus 378 ~~~~v 382 (392)
T PRK14046 378 AEKAV 382 (392)
T ss_pred HHHHH
Confidence 55544
No 276
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=26.61 E-value=2.7e+02 Score=21.83 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy1202 63 DILYITIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEH 106 (136)
Q Consensus 63 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~ 106 (136)
++|.++..+..+|+++++....+-+.+..+| +|+-.+-.+.+.
T Consensus 26 ~eLe~ay~~~~~D~~F~~el~~~l~~Y~GRp-tpLy~a~~Lt~~ 68 (396)
T COG0133 26 EELEKAYEKAKNDPEFQAELDYLLKDYAGRP-TPLYFAERLTEH 68 (396)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHh
Confidence 5777777788889999999999999999887 466554444443
No 277
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=26.54 E-value=52 Score=23.95 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=16.7
Q ss_pred ccEEEeCCChhHHHHHHHhCCC
Q psy1202 8 CKLFITHGGIHSSMEAVYHGVP 29 (136)
Q Consensus 8 ~~~~I~hgG~~s~~Eal~~g~P 29 (136)
.-++|||||...++=+...|+|
T Consensus 175 ~vlvVsHg~vir~l~~~l~~l~ 196 (245)
T TIGR01258 175 RVLIVAHGNSLRALVKHLEGIS 196 (245)
T ss_pred EEEEEcChHHHHHHHHHHHCcC
Confidence 4579999998777777777655
No 278
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=26.50 E-value=3e+02 Score=21.22 Aligned_cols=61 Identities=13% Similarity=0.196 Sum_probs=41.6
Q ss_pred CccEEEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcCc-eeEcCCC------CCCHHHHHHHHH
Q psy1202 7 NCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGM-GLITPHE------TITGDILYITIR 70 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G~-g~~l~~~------~~~~~~l~~~i~ 70 (136)
.+|++.|.+-+--+.|.+..+.++|.+| ||..-.....+.|. -+++..+ .++.+++.+.=+
T Consensus 139 ~~Di~cTSsNAvkvVe~~~~~~~Iif~P---D~~Lg~yva~~tg~k~ii~w~G~C~VH~~ft~~~i~~~k~ 206 (324)
T COG0379 139 EADICCTSSNAVKVVESALDGDKILFLP---DKNLGRYVAKQTGAKKIILWPGHCIVHEEFTAEDIEELKE 206 (324)
T ss_pred hcCeEEecchHHHHHHhccCCCcEEEcC---cHHHHHHHHHHcCCCcEEEECCccchhhhcCHHHHHHHHH
Confidence 3578888888888888886678888887 77776666666777 3444433 366666655433
No 279
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=26.23 E-value=2.4e+02 Score=21.12 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=29.8
Q ss_pred EEeCCChhHHHHHHHhCCCEEee-cCCcChHHHHHHHHHcCc
Q psy1202 11 FITHGGIHSSMEAVYHGVPVVMM-PGFSDQHQNCKLMEEKGM 51 (136)
Q Consensus 11 ~I~hgG~~s~~Eal~~g~P~i~~-P~~~dq~~na~~~~~~G~ 51 (136)
.+.--|..-+.+++..|.|+|++ |++++=..-+..+...|.
T Consensus 116 ~~~~~g~e~l~~a~a~gkgvIllt~H~GnWE~~~~~l~~~~~ 157 (308)
T PRK06553 116 RVEVRGIEIFERLRDDGKPALIFTAHLGNWELLAIAAAAFGL 157 (308)
T ss_pred eeEecCHHHHHHHHhcCCCEEEEeeCchHHHHHHHHHHHcCC
Confidence 34445666678888999999987 888887666666666653
No 280
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=26.22 E-value=1.1e+02 Score=25.59 Aligned_cols=34 Identities=6% Similarity=0.142 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHhcChHHHHHHHHHHHHHhcC
Q psy1202 59 TITGDILYITIREVLNNPRYRDTVGRLSKQVRSL 92 (136)
Q Consensus 59 ~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 92 (136)
+.+.+|+.+..++.-.||+.|.+.+++.+++..+
T Consensus 477 kMskqEvK~E~Ke~EGdP~iK~r~R~~~re~~~~ 510 (609)
T PRK12772 477 RMTKQEVKEEYKQDEGDPQIKAKIKQKQREMAMQ 510 (609)
T ss_pred CCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999888887764
No 281
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=25.63 E-value=60 Score=12.82 Aligned_cols=12 Identities=33% Similarity=0.479 Sum_probs=8.9
Q ss_pred hhHHHHHHHhCC
Q psy1202 17 IHSSMEAVYHGV 28 (136)
Q Consensus 17 ~~s~~Eal~~g~ 28 (136)
..|++||+..|.
T Consensus 3 mdsllealqtg~ 14 (15)
T PF06345_consen 3 MDSLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHHccC
Confidence 457889988774
No 282
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=25.60 E-value=2.4e+02 Score=19.82 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=33.3
Q ss_pred HhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh
Q psy1202 25 YHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (136)
Q Consensus 25 ~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~ 76 (136)
...+|+|++--..+.......+.+.|+.=++.+ ....+++.++|+.++...
T Consensus 66 ~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K-~~~~~eL~~aI~~v~~G~ 116 (207)
T PRK11475 66 FPRMRRLVIADDDIEARLIGSLSPSPLDGVLSK-ASTLEILQQELFLSLNGV 116 (207)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEec-CCCHHHHHHHHHHHHCCC
Confidence 447788887544444444444556676444443 447799999999998764
No 283
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=25.57 E-value=91 Score=25.60 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=23.5
Q ss_pred CCccEEEeCCChhH------HHHHHHhCCCEEeec
Q psy1202 6 RNCKLFITHGGIHS------SMEAVYHGVPVVMMP 34 (136)
Q Consensus 6 ~~~~~~I~hgG~~s------~~Eal~~g~P~i~~P 34 (136)
.+..+++++.|.+. +.||...++|+|.+.
T Consensus 73 g~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~ 107 (578)
T PRK06112 73 GKVAVVTAQNGPAATLLVAPLAEALKASVPIVALV 107 (578)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 34566778888776 899999999999983
No 284
>PRK14072 6-phosphofructokinase; Provisional
Probab=24.99 E-value=99 Score=24.60 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=23.5
Q ss_pred CCCccEEEeCCChhHHHHHHH-------hC--CCEEeecC
Q psy1202 5 HRNCKLFITHGGIHSSMEAVY-------HG--VPVVMMPG 35 (136)
Q Consensus 5 h~~~~~~I~hgG~~s~~Eal~-------~g--~P~i~~P~ 35 (136)
.-.++.+|.-||-+|+.-|.. .| +|+|.+|-
T Consensus 101 ~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPk 140 (416)
T PRK14072 101 AHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPK 140 (416)
T ss_pred HcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeee
Confidence 346788999999888755431 45 99999995
No 285
>PRK13710 plasmid maintenance protein CcdA; Provisional
Probab=24.89 E-value=1.6e+02 Score=17.34 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=20.7
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy1202 65 LYITIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAE 105 (136)
Q Consensus 65 l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie 105 (136)
++..++..|...--+.++.+|.+.... +.+....+|+
T Consensus 24 lS~~~e~~L~~~~~~~~~~~W~~eN~e----ai~~~n~~ve 60 (72)
T PRK13710 24 ISGLVNTAMQNEARRLRAERWKAENRE----GMAEVARFIE 60 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 455566666555556666677665553 4444444444
No 286
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=24.83 E-value=95 Score=22.76 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=21.1
Q ss_pred ccEEEeCCC-hhHHHHHHHhCCCEEeecC
Q psy1202 8 CKLFITHGG-IHSSMEAVYHGVPVVMMPG 35 (136)
Q Consensus 8 ~~~~I~hgG-~~s~~Eal~~g~P~i~~P~ 35 (136)
....|.+.| .+..+|+...|+|.|.+-.
T Consensus 100 ~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 100 LGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred CCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 344455555 6677999999999999865
No 287
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=24.79 E-value=3.9e+02 Score=21.85 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=22.1
Q ss_pred CCccEEEeCCChh------HHHHHHHhCCCEEee
Q psy1202 6 RNCKLFITHGGIH------SSMEAVYHGVPVVMM 33 (136)
Q Consensus 6 ~~~~~~I~hgG~~------s~~Eal~~g~P~i~~ 33 (136)
.+..++++|.|.| .+.+|...++|+|.+
T Consensus 70 g~~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i 103 (557)
T PRK08199 70 GRPGICFVTRGPGATNASIGVHTAFQDSTPMILF 103 (557)
T ss_pred CCCEEEEeCCCccHHHHHHHHHHHhhcCCCEEEE
Confidence 4566788887754 458999999999998
No 288
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=24.78 E-value=8.5 Score=17.75 Aligned_cols=17 Identities=24% Similarity=0.632 Sum_probs=10.8
Q ss_pred ChhHHHHHHHhCCCEEe
Q psy1202 16 GIHSSMEAVYHGVPVVM 32 (136)
Q Consensus 16 G~~s~~Eal~~g~P~i~ 32 (136)
|.|+++-.++.+.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 45677777777776554
No 289
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=24.37 E-value=1.4e+02 Score=20.10 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=8.2
Q ss_pred CCCCccEEEeCCChh
Q psy1202 4 GHRNCKLFITHGGIH 18 (136)
Q Consensus 4 ~h~~~~~~I~hgG~~ 18 (136)
....+-.|.||||.+
T Consensus 102 ~gK~v~~F~T~ggs~ 116 (156)
T PF12682_consen 102 SGKTVIPFCTSGGSG 116 (156)
T ss_dssp TTSEEEEEEE-SS--
T ss_pred CCCcEEEEEeeCCCC
Confidence 344566788998854
No 290
>PRK07586 hypothetical protein; Validated
Probab=24.34 E-value=3.8e+02 Score=21.58 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=20.4
Q ss_pred CccEEEeCCChhHH------HHHHHhCCCEEeec
Q psy1202 7 NCKLFITHGGIHSS------MEAVYHGVPVVMMP 34 (136)
Q Consensus 7 ~~~~~I~hgG~~s~------~Eal~~g~P~i~~P 34 (136)
+..+++.|.|.|.+ .+|...++|+|.+.
T Consensus 64 ~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~ 97 (514)
T PRK07586 64 KPAATLLHLGPGLANGLANLHNARRARTPIVNIV 97 (514)
T ss_pred CCEEEEecccHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 44567777776543 46889999999984
No 291
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=24.19 E-value=1.2e+02 Score=23.64 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=24.1
Q ss_pred CCccEEEeCCChhHH----HHHHHhCCCEEeecCC
Q psy1202 6 RNCKLFITHGGIHSS----MEAVYHGVPVVMMPGF 36 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~----~Eal~~g~P~i~~P~~ 36 (136)
..+|++|--||.-++ .-|-..|+|+|.+|..
T Consensus 83 ~~~d~vIGVGGGk~iD~aK~~A~~~~~pfIsvPT~ 117 (360)
T COG0371 83 DGADVVIGVGGGKTIDTAKAAAYRLGLPFISVPTI 117 (360)
T ss_pred cCCCEEEEecCcHHHHHHHHHHHHcCCCEEEecCc
Confidence 467899999996544 3456889999999964
No 292
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=23.96 E-value=3.8e+02 Score=22.16 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=35.5
Q ss_pred hHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh---HHHHHHHHHHH
Q psy1202 39 QHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP---RYRDTVGRLSK 87 (136)
Q Consensus 39 q~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~---~~~~~~~~~~~ 87 (136)
+..|.++-++.|.-.++.-...+.+++...+++=|.|. +++..+.++.+
T Consensus 452 ~~lN~aY~eKFGFpFIIca~G~s~~eILa~l~~RL~N~~e~E~~~Al~Ev~k 503 (516)
T PRK13797 452 ARGNAAYEERFGFIFLVRAAGRGAEEMLELLRARLAHDPEQELRIAAGQQAE 503 (516)
T ss_pred HHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 45699999999988777755568899999999888774 34444444433
No 293
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=23.93 E-value=98 Score=24.02 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=21.7
Q ss_pred CCccEEEeCCChhHHHHHH---H----------------------hCCCEEeecCC
Q psy1202 6 RNCKLFITHGGIHSSMEAV---Y----------------------HGVPVVMMPGF 36 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal---~----------------------~g~P~i~~P~~ 36 (136)
.++|++|.=||. |++... . .++|+|.+|..
T Consensus 86 ~~~D~IIaiGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTT 140 (382)
T PRK10624 86 SGADYLIAIGGG-SPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTT 140 (382)
T ss_pred cCCCEEEEeCCh-HHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCC
Confidence 467899999884 465554 1 25899999975
No 294
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=23.75 E-value=1.3e+02 Score=20.88 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=21.8
Q ss_pred CccEEEeCCC----------------hhHHHHHHHhCCCEEeecC
Q psy1202 7 NCKLFITHGG----------------IHSSMEAVYHGVPVVMMPG 35 (136)
Q Consensus 7 ~~~~~I~hgG----------------~~s~~Eal~~g~P~i~~P~ 35 (136)
..+.+|-.|| ......+...++|+++++.
T Consensus 63 ~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~ 107 (286)
T PF04230_consen 63 NADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQ 107 (286)
T ss_pred cCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECc
Confidence 3456777777 5567778899999999865
No 295
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=23.65 E-value=1.1e+02 Score=23.17 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=21.4
Q ss_pred CCccEEEeCCChhHHHHHHH------------hCCCEEeecCC
Q psy1202 6 RNCKLFITHGGIHSSMEAVY------------HGVPVVMMPGF 36 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~------------~g~P~i~~P~~ 36 (136)
.++|++|.-||. |++...- .++|+|.+|..
T Consensus 77 ~~~d~IiaiGGG-s~~D~aKa~a~~~~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 77 FKPDIVIALGGG-SAIDAAKAIIYFAKKLGKKKKPLFIAIPTT 118 (332)
T ss_pred cCCCEEEEECCc-hHHHHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 467899999885 4655432 14799999975
No 296
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=23.63 E-value=1.3e+02 Score=23.12 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=24.1
Q ss_pred CCCccEEEeCCChhHHHHHHH---h------CCCEEeecCC
Q psy1202 5 HRNCKLFITHGGIHSSMEAVY---H------GVPVVMMPGF 36 (136)
Q Consensus 5 h~~~~~~I~hgG~~s~~Eal~---~------g~P~i~~P~~ 36 (136)
.-+++.+|.-||-+|+.-+.. . ++|++.+|-.
T Consensus 90 ~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkT 130 (338)
T cd00363 90 KHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGT 130 (338)
T ss_pred HhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeec
Confidence 346788999999887755532 2 8999999953
No 297
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=23.55 E-value=68 Score=23.38 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=15.8
Q ss_pred ccEEEeCCChhHHHHHHHhCCC
Q psy1202 8 CKLFITHGGIHSSMEAVYHGVP 29 (136)
Q Consensus 8 ~~~~I~hgG~~s~~Eal~~g~P 29 (136)
.-++|||||....+=+...+.|
T Consensus 175 ~vlvVtHggvir~l~~~ll~~~ 196 (247)
T PRK14115 175 RVLIAAHGNSLRALVKYLDNIS 196 (247)
T ss_pred eEEEEeChHHHHHHHHHHhCCC
Confidence 4578999997776666666655
No 298
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=23.41 E-value=1.1e+02 Score=23.67 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=21.3
Q ss_pred CCccEEEeCCChhHHHHHH---H--------------------hCCCEEeecCC
Q psy1202 6 RNCKLFITHGGIHSSMEAV---Y--------------------HGVPVVMMPGF 36 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal---~--------------------~g~P~i~~P~~ 36 (136)
.++|++|.-||. |++... . .++|+|.+|..
T Consensus 85 ~~~D~IIaiGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 85 EKVDFILAVGGG-SVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred cCCCEEEEeCCh-HHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 467899999885 455443 1 36899999974
No 299
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=23.31 E-value=1.7e+02 Score=21.68 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=18.2
Q ss_pred CChhHHHHHHHhCCCEEeecCC
Q psy1202 15 GGIHSSMEAVYHGVPVVMMPGF 36 (136)
Q Consensus 15 gG~~s~~Eal~~g~P~i~~P~~ 36 (136)
|=.+..+|+...|+|.|.+-+.
T Consensus 105 GTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 105 GTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred ehHHHHHHHHHcCccceeeeeh
Confidence 4466779999999999999654
No 300
>PRK00770 deoxyhypusine synthase-like protein; Provisional
Probab=23.13 E-value=3.8e+02 Score=21.22 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=30.8
Q ss_pred CCCCCCccEEEeCCChhHHHHHHHh-CCCEEeecCCcChHHHHHHHHHcCceeEcC
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVYH-GVPVVMMPGFSDQHQNCKLMEEKGMGLITP 56 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~~-g~P~i~~P~~~dq~~na~~~~~~G~g~~l~ 56 (136)
+..|.-++++||-||. ...+...+ |.|.... +...+...+.+.|+-++-+
T Consensus 75 LIr~g~VD~IVTTGAn-l~hD~~~alg~~~y~G----~~~~dd~~Lr~~GinRI~d 125 (384)
T PRK00770 75 LIEAGFIDWIISTGAN-LYHDLHYALGLPLFAG----HPFVDDVKLREEGIIRIYD 125 (384)
T ss_pred HHHcCCccEEEcCCcc-HHHHHHHHhCCCcccC----CCCCCHHHHHHcCCCcccc
Confidence 3467889999999884 34444444 5555443 3344556667777665544
No 301
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=23.03 E-value=1.6e+02 Score=22.74 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHhcChHHHHHHHHHHHHHhcC
Q psy1202 59 TITGDILYITIREVLNNPRYRDTVGRLSKQVRSL 92 (136)
Q Consensus 59 ~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 92 (136)
..|.+++.+..++.-.||..|.+.+++.+++..+
T Consensus 213 kMskqEvKdE~Ke~EGdP~iK~r~R~~~re~~~~ 246 (342)
T TIGR01404 213 KMSKDEVKREYKEQEGDPEIKSKRRELHQEILSE 246 (342)
T ss_pred CCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999988887764
No 302
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=22.98 E-value=2.5e+02 Score=19.05 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=35.3
Q ss_pred hHHHHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcCh---HHHHHHHHHHH
Q psy1202 39 QHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP---RYRDTVGRLSK 87 (136)
Q Consensus 39 q~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~---~~~~~~~~~~~ 87 (136)
+..|..+-++.|.-.++.-...+.+++...+++=+.|. +.+....++.+
T Consensus 97 ~~lN~~Y~~kFGfpFii~v~g~s~~~IL~~l~~Rl~n~~e~E~~~al~Ev~k 148 (158)
T TIGR03180 97 LEGNAAYEEKFGRIFLIRAAGRSAEEMLDALQARLPNDPEQELTIAAEQLRK 148 (158)
T ss_pred HHHHHHHHHHCCCeEEEeeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35689999999988777755667888988888888774 44444444443
No 303
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=22.84 E-value=1.3e+02 Score=22.98 Aligned_cols=30 Identities=20% Similarity=0.447 Sum_probs=22.6
Q ss_pred CCccEEEeCCChhHHHHH-----HHhCCCEEeecCC
Q psy1202 6 RNCKLFITHGGIHSSMEA-----VYHGVPVVMMPGF 36 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Ea-----l~~g~P~i~~P~~ 36 (136)
.++|++|.-||. |++.. ...++|+|.+|..
T Consensus 77 ~~~d~iiavGGG-s~~D~aK~ia~~~~~p~i~VPTt 111 (345)
T cd08171 77 QEADMIFAVGGG-KAIDTVKVLADKLGKPVFTFPTI 111 (345)
T ss_pred cCCCEEEEeCCc-HHHHHHHHHHHHcCCCEEEecCc
Confidence 467899999985 46554 3458999999964
No 304
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=22.67 E-value=4.1e+02 Score=21.33 Aligned_cols=56 Identities=14% Similarity=-0.001 Sum_probs=40.1
Q ss_pred ChhHHHHHHHhCCCEEeecCC-c-ChHHHHHHHHHc-CceeEcCCCCCCHHHHHHHHHHH
Q psy1202 16 GIHSSMEAVYHGVPVVMMPGF-S-DQHQNCKLMEEK-GMGLITPHETITGDILYITIREV 72 (136)
Q Consensus 16 G~~s~~Eal~~g~P~i~~P~~-~-dq~~na~~~~~~-G~g~~l~~~~~~~~~l~~~i~~l 72 (136)
|.-++.+.+-...|+|..|.. + --...+..+.+. |+|.+- ....+++++.+.|+++
T Consensus 2 g~~~f~~~lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lg-ag~l~~e~l~~~I~~i 60 (418)
T cd04742 2 GDRSFKEDYGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFG-AGGLPLDEVEQAIERI 60 (418)
T ss_pred CChHHHHHhCCCccEECCcccCCCCCHHHHHHHHhCCCeeeec-CCCCCHHHHHHHHHHH
Confidence 445688888889999999986 2 445566666665 566544 3456788888888887
No 305
>PRK12361 hypothetical protein; Provisional
Probab=22.63 E-value=1.1e+02 Score=25.12 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=23.5
Q ss_pred CCccEEEeCCChhHHHHHHH----hCCCEEeecC
Q psy1202 6 RNCKLFITHGGIHSSMEAVY----HGVPVVMMPG 35 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal~----~g~P~i~~P~ 35 (136)
.+.+++|.-||=||+.|.+. .++|+-++|.
T Consensus 296 ~~~d~Viv~GGDGTl~ev~~~l~~~~~~lgiiP~ 329 (547)
T PRK12361 296 AGADIVIACGGDGTVTEVASELVNTDITLGIIPL 329 (547)
T ss_pred cCCCEEEEECCCcHHHHHHHHHhcCCCCEEEecC
Confidence 34688999999999988873 3577777885
No 306
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.61 E-value=2.9e+02 Score=19.56 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=8.4
Q ss_pred HHHHHHhCCCEEee
Q psy1202 20 SMEAVYHGVPVVMM 33 (136)
Q Consensus 20 ~~Eal~~g~P~i~~ 33 (136)
-.|.+..-.|=+++
T Consensus 66 n~E~i~~l~PDLIi 79 (262)
T cd01147 66 NYEKIAALKPDVVI 79 (262)
T ss_pred CHHHHHhcCCCEEE
Confidence 46666666665554
No 307
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=22.57 E-value=1.2e+02 Score=15.31 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHhc
Q psy1202 62 GDILYITIREVLNNPRYRDTVGRLSKQVRS 91 (136)
Q Consensus 62 ~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 91 (136)
+..+..-++..|.||...+.+++-++...+
T Consensus 3 ~~~V~~G~KAal~NPnvSeeaK~~A~~~Le 32 (36)
T PF10346_consen 3 PNNVAGGYKAALHNPNVSEEAKQHAREKLE 32 (36)
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Confidence 566778888889998777777776665544
No 308
>PRK12474 hypothetical protein; Provisional
Probab=22.45 E-value=3.8e+02 Score=21.67 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=20.5
Q ss_pred CccEEEeCCChh------HHHHHHHhCCCEEeec
Q psy1202 7 NCKLFITHGGIH------SSMEAVYHGVPVVMMP 34 (136)
Q Consensus 7 ~~~~~I~hgG~~------s~~Eal~~g~P~i~~P 34 (136)
+..++++|.|.| .+.+|..-++|+|.+.
T Consensus 68 ~~gv~~~t~GpG~~N~~~gl~~A~~d~~Pvl~i~ 101 (518)
T PRK12474 68 KPAVTLLHLGPGLANGLANLHNARRAASPIVNIV 101 (518)
T ss_pred CCEEEEEccchhHhHhHHHHHHHhhcCCCEEEEe
Confidence 456667776655 3467889999999983
No 309
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=22.33 E-value=4.4e+02 Score=21.70 Aligned_cols=29 Identities=14% Similarity=0.254 Sum_probs=21.4
Q ss_pred CCccEEEeCCChh------HHHHHHHhCCCEEeec
Q psy1202 6 RNCKLFITHGGIH------SSMEAVYHGVPVVMMP 34 (136)
Q Consensus 6 ~~~~~~I~hgG~~------s~~Eal~~g~P~i~~P 34 (136)
.+..+++++.|.| .+.+|...++|+|.+.
T Consensus 74 gk~gv~~~t~GPG~~N~~~gla~A~~d~~Pvl~I~ 108 (569)
T PRK08327 74 GKPQAVMVHVDVGTANALGGVHNAARSRIPVLVFA 108 (569)
T ss_pred CCCeEEEEecCHHHHHHHHHHHHHhhcCCCEEEEe
Confidence 3456677776754 3588899999999983
No 310
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=22.30 E-value=1.2e+02 Score=22.58 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=19.9
Q ss_pred CCccEEEeCC--ChhH----HHHHHHhCCCEEee
Q psy1202 6 RNCKLFITHG--GIHS----SMEAVYHGVPVVMM 33 (136)
Q Consensus 6 ~~~~~~I~hg--G~~s----~~Eal~~g~P~i~~ 33 (136)
-.+|++||.- |.|. +.-|...|+|+|++
T Consensus 195 ~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 195 YRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred hCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 4678888763 3322 45567899999999
No 311
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=22.18 E-value=1.2e+02 Score=17.10 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=17.9
Q ss_pred EEeCCChhHHHHHHHhCCCEEee
Q psy1202 11 FITHGGIHSSMEAVYHGVPVVMM 33 (136)
Q Consensus 11 ~I~hgG~~s~~Eal~~g~P~i~~ 33 (136)
|.|.-.-.-+.|+...|.|++.+
T Consensus 8 ~~HYv~K~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 8 FAHYVRKDKIAESAVMGTPVVAL 30 (58)
T ss_pred EeeecchhHHHHHHhcCceeEee
Confidence 44444556789999999999987
No 312
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=22.01 E-value=1.3e+02 Score=23.32 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=21.6
Q ss_pred CCccEEEeCCChhHHHHHH---H--------------------hCCCEEeecCC
Q psy1202 6 RNCKLFITHGGIHSSMEAV---Y--------------------HGVPVVMMPGF 36 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal---~--------------------~g~P~i~~P~~ 36 (136)
.++|++|.=||. |++.+. . .++|+|.+|..
T Consensus 82 ~~~D~IIaiGGG-s~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 134 (376)
T cd08193 82 AGADGVIGFGGG-SSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTT 134 (376)
T ss_pred cCCCEEEEeCCc-hHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCC
Confidence 467899999985 455542 1 37899999975
No 313
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=21.88 E-value=1.2e+02 Score=26.27 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=0.0
Q ss_pred CccEEEeCCChhHHHHHHH----------hCCCEEeec
Q psy1202 7 NCKLFITHGGIHSSMEAVY----------HGVPVVMMP 34 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~----------~g~P~i~~P 34 (136)
+++.+|.-||-+|+.-+.. .++|++.+|
T Consensus 478 ~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIP 515 (762)
T cd00764 478 GIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIP 515 (762)
T ss_pred CCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEec
No 314
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=21.76 E-value=1.3e+02 Score=23.42 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=21.4
Q ss_pred CCccEEEeCCChhHHHHHH---H--h------------------CCCEEeecCC
Q psy1202 6 RNCKLFITHGGIHSSMEAV---Y--H------------------GVPVVMMPGF 36 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal---~--~------------------g~P~i~~P~~ 36 (136)
.++|++|.=||. |++... . . ++|+|.+|..
T Consensus 78 ~~~D~IIaiGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 78 AGPDVIIGLGGG-SCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred cCCCEEEEeCCc-hHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 467899999885 455442 1 1 7899999975
No 315
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=21.65 E-value=1.4e+02 Score=22.96 Aligned_cols=30 Identities=37% Similarity=0.785 Sum_probs=22.6
Q ss_pred CCccEEEeCCChhHHHHH-----HHhCCCEEeecCC
Q psy1202 6 RNCKLFITHGGIHSSMEA-----VYHGVPVVMMPGF 36 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Ea-----l~~g~P~i~~P~~ 36 (136)
.++|++|.-||. |++.. ...++|+|.+|..
T Consensus 83 ~~~d~IIavGGG-sv~D~aK~iA~~~~~p~i~IPTt 117 (366)
T PRK09423 83 NGCDVVIGIGGG-KTLDTAKAVADYLGVPVVIVPTI 117 (366)
T ss_pred cCCCEEEEecCh-HHHHHHHHHHHHcCCCEEEeCCc
Confidence 367999999995 45543 3458999999974
No 316
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=21.58 E-value=1.3e+02 Score=23.25 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=21.4
Q ss_pred CCccEEEeCCChhHHHHHH---H--------------------hCCCEEeecCC
Q psy1202 6 RNCKLFITHGGIHSSMEAV---Y--------------------HGVPVVMMPGF 36 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal---~--------------------~g~P~i~~P~~ 36 (136)
.++|++|.=||. |++... . .++|+|.+|..
T Consensus 84 ~~~D~IIavGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 136 (377)
T cd08176 84 EGCDFIISIGGG-SPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTT 136 (377)
T ss_pred cCCCEEEEeCCc-HHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCC
Confidence 367889999885 465532 1 36899999974
No 317
>PRK13840 sucrose phosphorylase; Provisional
Probab=21.40 E-value=1.4e+02 Score=24.42 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=30.9
Q ss_pred HhCCCEEeecCCcChHHHHHHHHHcCceeEcCCCCCCHHHHHHHHH
Q psy1202 25 YHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIR 70 (136)
Q Consensus 25 ~~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~ 70 (136)
..|+|+|-+.=.--.......+++.|.++.+++..++.+++.+.++
T Consensus 370 ~~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~ 415 (495)
T PRK13840 370 APGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALE 415 (495)
T ss_pred CCCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHH
Confidence 5688888764221222233456668999999999998888877754
No 318
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=21.38 E-value=1.3e+02 Score=22.26 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=20.0
Q ss_pred EEEeCCC-hhHHHHHHHhCCCEEeecC
Q psy1202 10 LFITHGG-IHSSMEAVYHGVPVVMMPG 35 (136)
Q Consensus 10 ~~I~hgG-~~s~~Eal~~g~P~i~~P~ 35 (136)
.-+.+.| .+..+|+...|+|.|.+-+
T Consensus 107 ~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 107 TNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred cCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 3344555 6778999999999999865
No 319
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=21.33 E-value=1.3e+02 Score=23.25 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=21.3
Q ss_pred CCccEEEeCCChhHHHHHH---Hh--------------------CCCEEeecCC
Q psy1202 6 RNCKLFITHGGIHSSMEAV---YH--------------------GVPVVMMPGF 36 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal---~~--------------------g~P~i~~P~~ 36 (136)
.++|++|.=||. |++... .. .+|+|.+|..
T Consensus 84 ~~~d~IIaiGGG-sviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 136 (377)
T cd08188 84 NGCDVIIAVGGG-SPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTT 136 (377)
T ss_pred cCCCEEEEeCCc-hHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 467899999885 465554 11 4699999975
No 320
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=21.33 E-value=3.4e+02 Score=19.92 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=32.4
Q ss_pred EEEeCCChhHHHHHHHhCCCEEee-cCCcChHHHHHHHHHcCcee
Q psy1202 10 LFITHGGIHSSMEAVYHGVPVVMM-PGFSDQHQNCKLMEEKGMGL 53 (136)
Q Consensus 10 ~~I~hgG~~s~~Eal~~g~P~i~~-P~~~dq~~na~~~~~~G~g~ 53 (136)
-.++--|.--+.+++..|.|+|++ +++++-..-+..+...|..+
T Consensus 103 ~~~~~~g~e~l~~a~~~g~gvIl~t~H~GnwE~~~~~l~~~~~~~ 147 (295)
T PF03279_consen 103 KRVEIEGEEHLEAALAEGRGVILLTGHFGNWELAGRALARRGPPV 147 (295)
T ss_pred eEEEEECHHHHHHHHhcCCCCEEeCcCcChHHHHHHHHHhhCCce
Confidence 345555666688899999999997 78888777667777666543
No 321
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=21.31 E-value=74 Score=23.25 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=14.4
Q ss_pred cEEEeCCChhHHHHHHHhCCC
Q psy1202 9 KLFITHGGIHSSMEAVYHGVP 29 (136)
Q Consensus 9 ~~~I~hgG~~s~~Eal~~g~P 29 (136)
-++|+|||...++=+...|.|
T Consensus 178 iliVsHggvir~l~~~~~~~~ 198 (249)
T PRK14120 178 VLIAAHGNSLRALVKHLDGIS 198 (249)
T ss_pred EEEEeCHHHHHHHHHHHhCCC
Confidence 468999997666655555544
No 322
>PRK10852 thiosulfate transporter subunit; Provisional
Probab=21.23 E-value=2.3e+02 Score=21.80 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=29.9
Q ss_pred CCCccE--EEeCCChhHHHHHHHhCCCEEeecCCcChHHHHHHHHHcC
Q psy1202 5 HRNCKL--FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKG 50 (136)
Q Consensus 5 h~~~~~--~I~hgG~~s~~Eal~~g~P~i~~P~~~dq~~na~~~~~~G 50 (136)
|+.+++ ..+|||.+.....+..|.|.=++- .........+.+.|
T Consensus 55 ~~g~~v~i~~s~ggSg~~~~qi~~G~~ADV~~--~A~~~~~d~l~~~g 100 (338)
T PRK10852 55 NPGDKLTIKQSHAGSSKQALAILQGLKADVVT--YNQVTDVQILHDKG 100 (338)
T ss_pred CCCCceEEEEcCCCcHHHHHHHhcCCCcCEEe--cCCHHHHHHHHHCC
Confidence 456666 579999999999999999876662 22233344454544
No 323
>KOG4079|consensus
Probab=21.19 E-value=2.7e+02 Score=18.76 Aligned_cols=50 Identities=8% Similarity=0.055 Sum_probs=36.8
Q ss_pred HHHHHHHcCceeEcCCCCCCHHHHHHHHHHHhcChHHHHHHHHHHHHHhc
Q psy1202 42 NCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTVGRLSKQVRS 91 (136)
Q Consensus 42 na~~~~~~G~g~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 91 (136)
.++..-+.|--+.++.+..+.+++.+.|.+++...+...+..+.-+.-..
T Consensus 76 F~R~YlddGr~vL~Dld~~~r~eI~~hl~K~lGKtee~lr~Ee~ek~~k~ 125 (169)
T KOG4079|consen 76 FARAYLDDGREVLFDLDGMKREEIEKHLAKTLGKTEEVLRREELEKIAKL 125 (169)
T ss_pred HHHheecCcceEEEEcccccHHHHHHHHHHHhCccHHHHhHHHHHHHhhc
Confidence 35555667888888888889999999999999776666666555544444
No 324
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=21.19 E-value=87 Score=21.66 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=16.8
Q ss_pred ccEEEeCCChhHHHHHHHhCCCE
Q psy1202 8 CKLFITHGGIHSSMEAVYHGVPV 30 (136)
Q Consensus 8 ~~~~I~hgG~~s~~Eal~~g~P~ 30 (136)
.-++|+|||...++=....|.|.
T Consensus 147 ~vlvVsHg~~ir~l~~~~~~~~~ 169 (208)
T COG0406 147 NVLVVSHGGVIRALLAYLLGLDL 169 (208)
T ss_pred eEEEEEChHHHHHHHHHhcCCCh
Confidence 35799999988766666666554
No 325
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=21.06 E-value=1.4e+02 Score=19.93 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=12.9
Q ss_pred hHHHHHHHhCCCEEeecCCcChHH
Q psy1202 18 HSSMEAVYHGVPVVMMPGFSDQHQ 41 (136)
Q Consensus 18 ~s~~Eal~~g~P~i~~P~~~dq~~ 41 (136)
|.+-.-......=+++-.|+|++.
T Consensus 62 N~iRT~~li~~aDvVVvrFGekYK 85 (141)
T PF11071_consen 62 NAIRTRTLIEKADVVVVRFGEKYK 85 (141)
T ss_pred hHHHHHHHHhhCCEEEEEechHHH
Confidence 333333444455566667777654
No 326
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=21.02 E-value=1.4e+02 Score=20.02 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=20.0
Q ss_pred CccEEEeCCCh------hHHHHHHHhCCCEEeec
Q psy1202 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (136)
Q Consensus 7 ~~~~~I~hgG~------~s~~Eal~~g~P~i~~P 34 (136)
+..+++++.|. +.+.+|...+.|+|++.
T Consensus 64 ~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~ 97 (172)
T PF02776_consen 64 RPGVVIVTSGPGATNALTGLANAYADRIPVLVIT 97 (172)
T ss_dssp SEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEE
T ss_pred cceEEEeecccchHHHHHHHhhcccceeeEEEEe
Confidence 45567777764 34578889999999984
No 327
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=20.98 E-value=2.1e+02 Score=17.46 Aligned_cols=54 Identities=7% Similarity=-0.029 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCh----HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCC
Q psy1202 63 DILYITIREVLNNP----RYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAANKGVLGY 116 (136)
Q Consensus 63 ~~l~~~i~~ll~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~~~~~~l 116 (136)
++....++++.+|. -.|..+.+..+.+.+....+..+++.-|-.+-+....+.+
T Consensus 9 ~~~~~~L~~I~~D~sVPRNIRr~a~ea~~~L~~e~~~~~vRaataIs~LdeIsnDPNm 66 (85)
T PF03685_consen 9 KQAIQMLERIINDTSVPRNIRRAAEEAKEILNNEEESPGVRAATAISILDEISNDPNM 66 (85)
T ss_dssp HHHHHHHHHHHT-TTS-HHHHHHHHHHHHHCT-TTS-HHHHHHHHHHHHHHHCT-TTS
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCCCcchhHhHHHHHHHHHHhhcCCCC
Confidence 34556667777775 5677777777777776656666766666555444333333
No 328
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=20.84 E-value=1.4e+02 Score=24.30 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=22.1
Q ss_pred CCccEEEeCCChh------HHHHHHHhCCCEEee
Q psy1202 6 RNCKLFITHGGIH------SSMEAVYHGVPVVMM 33 (136)
Q Consensus 6 ~~~~~~I~hgG~~------s~~Eal~~g~P~i~~ 33 (136)
.+..+++.|.|.| .+.||...++|+|++
T Consensus 72 g~~~v~~vt~gpG~~N~~~gia~A~~~~~Pvl~i 105 (530)
T PRK07092 72 GNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVIT 105 (530)
T ss_pred CCceEEEeccCchHHHHHHHHHHHhhcCCCEEEE
Confidence 3456677777765 679999999999998
No 329
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=20.67 E-value=1.4e+02 Score=21.63 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=21.0
Q ss_pred CccEEEeCCChhHHHHHHHhCCCEEee
Q psy1202 7 NCKLFITHGGIHSSMEAVYHGVPVVMM 33 (136)
Q Consensus 7 ~~~~~I~hgG~~s~~Eal~~g~P~i~~ 33 (136)
.++++|+.-. +.++=|...|+|++++
T Consensus 198 ~~~l~I~~Ds-g~~HlA~a~~~p~i~l 223 (279)
T cd03789 198 RADLVVTNDS-GPMHLAAALGTPTVAL 223 (279)
T ss_pred hCCEEEeeCC-HHHHHHHHcCCCEEEE
Confidence 5788998854 4577778999999987
No 330
>PRK02492 deoxyhypusine synthase-like protein; Provisional
Probab=20.43 E-value=4.2e+02 Score=20.67 Aligned_cols=50 Identities=6% Similarity=0.014 Sum_probs=30.0
Q ss_pred CCCCCCccEEEeCCChhHHHHHHH--hCCCEEeecCCcChHHHHHHHHHcCceeEcC
Q psy1202 2 PTGHRNCKLFITHGGIHSSMEAVY--HGVPVVMMPGFSDQHQNCKLMEEKGMGLITP 56 (136)
Q Consensus 2 ~L~h~~~~~~I~hgG~~s~~Eal~--~g~P~i~~P~~~dq~~na~~~~~~G~g~~l~ 56 (136)
+..|..+|++||-||-. +-|-+. .|.|.... +...+-..+.+.|+-++-+
T Consensus 81 Li~~~~VD~iVTTganl-~eeD~~k~~g~~~y~G----~f~~dd~~Lr~~ginRIgd 132 (347)
T PRK02492 81 LVRNNMVDAIVATGANI-VDQDFFEALGFKHYQG----SPFVDDAVLRDLYIDRIYD 132 (347)
T ss_pred HHHcCCeeEEEECCCCc-hHHHHHHHcCCCeecC----CCCCCHHHHHHcCCCcccc
Confidence 35688899999999843 333332 44455443 3334455666777665544
No 331
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=20.32 E-value=2.8e+02 Score=18.60 Aligned_cols=46 Identities=11% Similarity=0.136 Sum_probs=29.8
Q ss_pred HhCCCEEeecCCcC--hHHHHHHHHHcCceeEcCCCCCCHHHHHHHHH
Q psy1202 25 YHGVPVVMMPGFSD--QHQNCKLMEEKGMGLITPHETITGDILYITIR 70 (136)
Q Consensus 25 ~~g~P~i~~P~~~d--q~~na~~~~~~G~g~~l~~~~~~~~~l~~~i~ 70 (136)
..|++++.+....+ .....+.+.+.+-|....-...+...+...++
T Consensus 130 ~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~~~~~~~~~ 177 (178)
T cd01451 130 ARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLSADAIASAVR 177 (178)
T ss_pred hcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCCHHHHHHHhh
Confidence 56788887765443 34455667777777777666666666666554
No 332
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=20.32 E-value=1.4e+02 Score=23.01 Aligned_cols=30 Identities=27% Similarity=0.643 Sum_probs=21.8
Q ss_pred CCccEEEeCCChhHHHHHH---H--------------------hCCCEEeecCC
Q psy1202 6 RNCKLFITHGGIHSSMEAV---Y--------------------HGVPVVMMPGF 36 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Eal---~--------------------~g~P~i~~P~~ 36 (136)
.++|++|.=||. |++... . .++|+|.+|..
T Consensus 79 ~~~D~IIaiGGG-S~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 79 GGCDVIIALGGG-SPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred cCCCEEEEeCCc-hHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 467889999884 566642 2 36899999975
No 333
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=20.29 E-value=4.9e+02 Score=21.37 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=34.0
Q ss_pred eeEcCCCCCCHHHHHHHHHHHhcCh--HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc
Q psy1202 52 GLITPHETITGDILYITIREVLNNP--RYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAAN 110 (136)
Q Consensus 52 g~~l~~~~~~~~~l~~~i~~ll~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~ 110 (136)
++.+++ .+.++++++|.+.|+-+ +-+++.+++.+.+.+ ..+..|++.++..
T Consensus 424 AliVNP--~d~~~va~ai~~AL~m~~eEr~~r~~~~~~~v~~------~d~~~W~~~fl~~ 476 (486)
T COG0380 424 ALIVNP--WDTKEVADAIKRALTMSLEERKERHEKLLKQVLT------HDVARWANSFLDD 476 (486)
T ss_pred CEeECC--CChHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHH
Confidence 555653 46789999999999753 455555566555554 3567787776644
No 334
>PRK13462 acid phosphatase; Provisional
Probab=20.26 E-value=1e+02 Score=21.58 Aligned_cols=22 Identities=18% Similarity=0.449 Sum_probs=15.3
Q ss_pred ccEEEeCCChhHHHHHHHhCCC
Q psy1202 8 CKLFITHGGIHSSMEAVYHGVP 29 (136)
Q Consensus 8 ~~~~I~hgG~~s~~Eal~~g~P 29 (136)
.-++|+|||....+=+-..|.|
T Consensus 141 ~vliVsHg~vir~ll~~~l~~~ 162 (203)
T PRK13462 141 DVVFVSHGHFSRAVITRWVELP 162 (203)
T ss_pred CEEEEeCCHHHHHHHHHHhCCC
Confidence 3579999987666555566655
No 335
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=20.26 E-value=1.5e+02 Score=27.49 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=25.4
Q ss_pred CCCccEEEeCCChhHHHHHHH--------------hCCCEEeecCC
Q psy1202 5 HRNCKLFITHGGIHSSMEAVY--------------HGVPVVMMPGF 36 (136)
Q Consensus 5 h~~~~~~I~hgG~~s~~Eal~--------------~g~P~i~~P~~ 36 (136)
.-+++.+|.-||-+|..-|.. .|+|+|.+|-.
T Consensus 798 ~~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVPkT 843 (1328)
T PTZ00468 798 FFNMRAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVC 843 (1328)
T ss_pred HcCCCEEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeCcc
Confidence 346788999999888866654 48999999964
No 336
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=20.15 E-value=1.6e+02 Score=18.32 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=16.1
Q ss_pred CChhHHHHH---HHhCCCEEeecC
Q psy1202 15 GGIHSSMEA---VYHGVPVVMMPG 35 (136)
Q Consensus 15 gG~~s~~Ea---l~~g~P~i~~P~ 35 (136)
.+.||..|. ...|+|++++-.
T Consensus 74 ~d~Gt~~ElG~A~algkpv~~~~~ 97 (113)
T PF05014_consen 74 PDSGTAFELGYAYALGKPVILLTE 97 (113)
T ss_dssp --HHHHHHHHHHHHTTSEEEEEEC
T ss_pred CCCcHHHHHHHHHHCCCEEEEEEc
Confidence 578999995 688999999854
No 337
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=20.10 E-value=2e+02 Score=16.76 Aligned_cols=29 Identities=14% Similarity=0.356 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHHHhcChHHHHHHHHH
Q psy1202 57 HETITGDILYITIREVLNNPRYRDTVGRL 85 (136)
Q Consensus 57 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 85 (136)
.++++.+++.+.++.+..|.-+++...++
T Consensus 39 ~~kIsR~~fvr~lR~IVGD~lL~s~I~~l 67 (70)
T PF12174_consen 39 KKKISREEFVRKLRQIVGDQLLRSAIKSL 67 (70)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55788999999999999887776666554
No 338
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=20.05 E-value=1.5e+02 Score=22.66 Aligned_cols=30 Identities=30% Similarity=0.633 Sum_probs=22.7
Q ss_pred CCccEEEeCCChhHHHHH-----HHhCCCEEeecCC
Q psy1202 6 RNCKLFITHGGIHSSMEA-----VYHGVPVVMMPGF 36 (136)
Q Consensus 6 ~~~~~~I~hgG~~s~~Ea-----l~~g~P~i~~P~~ 36 (136)
.++|++|.=||.. ++.+ +..++|+|.+|..
T Consensus 76 ~~~D~IIavGGGS-~iD~aK~ia~~~~~P~iaIPTT 110 (351)
T cd08170 76 NGADVVIGIGGGK-TLDTAKAVADYLGAPVVIVPTI 110 (351)
T ss_pred cCCCEEEEecCch-hhHHHHHHHHHcCCCEEEeCCc
Confidence 4788999999854 5543 3458999999964
No 339
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=20.00 E-value=1.7e+02 Score=18.49 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Q psy1202 63 DILYITIREVLNNPRYRDTVGRLSKQV 89 (136)
Q Consensus 63 ~~l~~~i~~ll~~~~~~~~~~~~~~~~ 89 (136)
.++.++=..+|.|+.+...+.+.-..-
T Consensus 67 a~If~ah~~~L~D~~l~~~v~~~I~~~ 93 (123)
T PF05524_consen 67 AAIFEAHLMMLEDPELIDEVEELIREG 93 (123)
T ss_dssp THHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHhHHHHHHHHHhcc
Confidence 378888888999999998888764433
Done!