RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1202
(136 letters)
>gnl|CDD|201077 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase.
Length = 500
Score = 103 bits (258), Expect = 9e-27
Identities = 47/118 (39%), Positives = 64/118 (54%)
Query: 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGD 63
GH + F+TH G + EA+ HGVP+V MP F DQ N K ME KG + T+T +
Sbjct: 338 GHPKTRAFVTHAGSNGVYEAICHGVPMVGMPLFGDQMDNAKHMEAKGAAVTLNVLTMTSE 397
Query: 64 ILYITIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAANKGVLGYTPAAQ 121
L ++ V+N+P Y++ + RLS P LD+AV W E V +KG PAA
Sbjct: 398 DLLNALKTVINDPSYKENIMRLSSIHHDQPVKPLDRAVFWIEFVMRHKGAKHLRPAAH 455
>gnl|CDD|223071 PHA03392, egt, ecdysteroid UDP-glucosyltransferase; Provisional.
Length = 507
Score = 86.2 bits (214), Expect = 1e-20
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDI 64
H+N K F+T GG+ S+ EA+ VP+V +P DQ N E G+G T++
Sbjct: 362 HKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQ 421
Query: 65 LYITIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAANKGVLG--YTPAA 120
L + I +V+ NP+YR + L +R P + L +A+ + EHV NK T AA
Sbjct: 422 LVLAIVDVIENPKYRKNLKELRHLIRHQPMTPLHKAIWYTEHVIRNKHGNTSLKTKAA 479
>gnl|CDD|224732 COG1819, COG1819, Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms].
Length = 406
Score = 74.8 bits (184), Expect = 8e-17
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDIL 65
I HGG ++ EA+Y GVP+V++P +DQ N + +EE G G+ P E +T + L
Sbjct: 299 PRADAVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERL 358
Query: 66 YITIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAANKGVL 114
+ EVL + YR RL+++ + +A E A K L
Sbjct: 359 RAAVNEVLADDSYRRAAERLAEEFK--EEDGPAKAADLLEEFAREKKKL 405
>gnl|CDD|233407 TIGR01426, MGT, glycosyltransferase, MGT family. This model
describes the MGT (macroside glycosyltransferase)
subfamily of the UDP-glucuronosyltransferase family.
Members include a number of glucosyl transferases for
macrolide antibiotic inactivation, but also include
transferases of glucose-related sugars for macrolide
antibiotic production [Cellular processes, Toxin
production and resistance].
Length = 392
Score = 69.7 bits (171), Expect = 5e-15
Identities = 30/81 (37%), Positives = 53/81 (65%)
Query: 10 LFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITI 69
FITHGG++S+MEA+++GVP+V +P +DQ + + E G+G P E +T + L +
Sbjct: 294 AFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAV 353
Query: 70 REVLNNPRYRDTVGRLSKQVR 90
VL++PRY + + ++ ++R
Sbjct: 354 LAVLSDPRYAERLRKMRAEIR 374
>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of
homologous glycosyltransferases involved in the final
stages of the biosynthesis of antibiotics vancomycin and
related chloroeremomycin. Gtfs transfer sugar moieties
from an activated NDP-sugar donor to the oxidatively
cross-linked heptapeptide core of vancomycin group
antibiotics. The core structure is important for the
bioactivity of the antibiotics.
Length = 401
Score = 57.8 bits (140), Expect = 1e-10
Identities = 21/72 (29%), Positives = 34/72 (47%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYI 67
C + HGG ++ A+ GVP +++P F DQ + E G G +T + L
Sbjct: 305 CAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAA 364
Query: 68 TIREVLNNPRYR 79
+R +L+ P R
Sbjct: 365 ALRRLLDPPSRR 376
>gnl|CDD|177813 PLN02152, PLN02152, indole-3-acetate beta-glucosyltransferase.
Length = 455
Score = 50.4 bits (120), Expect = 3e-08
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE 48
HR F+TH G SS+E++ GVPVV P +SDQ N KL+EE
Sbjct: 343 HRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEE 386
>gnl|CDD|177830 PLN02173, PLN02173, UDP-glucosyl transferase family protein.
Length = 449
Score = 45.0 bits (106), Expect = 3e-06
Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE---KGMGLITPHET--ITGDIL 65
F+TH G +S+ME + GVP+V MP ++DQ N K +++ G+ + E+ + +
Sbjct: 339 FMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEI 398
Query: 66 YITIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQ 99
+I+EV+ + ++ + + + R L +L +
Sbjct: 399 EFSIKEVMEGEKSKE-MKENAGKWRDLAVKSLSE 431
>gnl|CDD|215247 PLN02448, PLN02448, UDP-glycosyltransferase family protein.
Length = 459
Score = 43.8 bits (104), Expect = 6e-06
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK---GMGL 53
F TH G +S++EAV+ GVP++ P F DQ N KL+ E G +
Sbjct: 345 FWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRV 390
>gnl|CDD|215127 PLN02210, PLN02210, UDP-glucosyl transferase.
Length = 456
Score = 43.9 bits (103), Expect = 6e-06
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK-GMGLITPHETITGD 63
H F+TH G +S++E V GVPVV P ++DQ + +L+ + G+G+ ++ + G+
Sbjct: 340 HMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGE 399
Query: 64 I 64
+
Sbjct: 400 L 400
>gnl|CDD|178170 PLN02555, PLN02555, limonoid glucosyltransferase.
Length = 480
Score = 43.6 bits (103), Expect = 8e-06
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM 46
H + F+TH G +S+MEA+ GVPVV P + DQ + +
Sbjct: 352 AHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYL 394
>gnl|CDD|215084 PLN00164, PLN00164, glucosyltransferase; Provisional.
Length = 480
Score = 42.7 bits (101), Expect = 2e-05
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQN 42
F+TH G +S +E+++HGVP+ P +++QH N
Sbjct: 361 FVTHCGWNSVLESLWHGVPMAPWPLYAEQHLN 392
>gnl|CDD|178572 PLN02992, PLN02992, coniferyl-alcohol glucosyltransferase.
Length = 481
Score = 40.7 bits (95), Expect = 8e-05
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM-EEKGMGLIT--PHETIT 61
H+ F+TH G S++E+V GVP++ P F++Q+ N L+ +E G+ + + P E I+
Sbjct: 354 HQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVIS 413
Query: 62 GDILYITIREVL 73
+ +R+V+
Sbjct: 414 RSKIEALVRKVM 425
>gnl|CDD|215293 PLN02534, PLN02534, UDP-glycosyltransferase.
Length = 491
Score = 39.8 bits (93), Expect = 1e-04
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE 48
H F+TH G +S++E + GVP++ P F++Q N KL+ E
Sbjct: 360 HPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVE 403
>gnl|CDD|233077 TIGR00661, MJ1255, conserved hypothetical protein. This model
represents nearly the full length of MJ1255 from
Methanococcus jannaschii and of an unpublished protein
from Vibrio cholerae, as well as the C-terminal half of
a protein from Methanobacterium thermoautotrophicum. A
small region (~50 amino acids) within the domain appears
related to a family of sugar transferases [Hypothetical
proteins, Conserved].
Length = 321
Score = 39.1 bits (91), Expect = 3e-04
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMP--GFSDQHQNCKLMEEKGMG 52
+N +L ITHGG EA+ G P++++P G +Q N +E+ G G
Sbjct: 246 KNAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCG 294
>gnl|CDD|178589 PLN03015, PLN03015, UDP-glucosyl transferase.
Length = 470
Score = 39.3 bits (91), Expect = 3e-04
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM-EEKGMGLIT---PHETI 60
HR+ F++H G S +E++ GVP+V P +++Q N L+ EE G+ + T P E +
Sbjct: 351 HRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKV 410
Query: 61 TG 62
G
Sbjct: 411 IG 412
>gnl|CDD|178581 PLN03004, PLN03004, UDP-glycosyltransferase.
Length = 451
Score = 38.9 bits (90), Expect = 4e-04
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDI 64
H+ F+TH G +S +EAV GVP+V P +++Q N ++ ++ I+ +E+ TG
Sbjct: 350 HKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETG-- 407
Query: 65 LYITIREVLNNPRYRDTVGRLSKQVRSLPYSN 96
+++ EV R ++ +G + R++ N
Sbjct: 408 -FVSSTEV--EKRVQEIIGECPVRERTMAMKN 436
>gnl|CDD|178275 PLN02670, PLN02670, transferase, transferring glycosyl groups.
Length = 472
Score = 38.3 bits (89), Expect = 4e-04
Identities = 24/106 (22%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDI 64
H + F+TH G +S +E + G +++ P ++Q N +L+ K +GL P + G
Sbjct: 355 HESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSF 414
Query: 65 LYITIREVLNNPRYRD---TVGRLSKQVRSLPYSNLDQAVRWAEHV 107
++ E + D + +K++R+L + ++D+ R+ + +
Sbjct: 415 TSDSVAESVRLAMVDDAGEEIRDKAKEMRNL-FGDMDRNNRYVDEL 459
>gnl|CDD|215304 PLN02554, PLN02554, UDP-glycosyltransferase family protein.
Length = 481
Score = 38.2 bits (89), Expect = 6e-04
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM-EEKGMG-----------LITPHE 58
F+TH G +S +E+++ GVP+ P +++Q N M EE G+ L E
Sbjct: 364 FVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEME 423
Query: 59 TITGD 63
T+T +
Sbjct: 424 TVTAE 428
>gnl|CDD|222200 pfam13528, Glyco_trans_1_3, Glycosyl transferase family 1.
Length = 317
Score = 38.0 bits (89), Expect = 6e-04
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMP--GFSDQHQNCKLMEEKGMGLITPHETITGDIL 65
C I + G EA+Y G P++++P G +Q N +E G G++ E + +L
Sbjct: 250 CSAVICNAGFELLSEALYLGKPLLLVPLDGQFEQTSNALYLERLGYGIVMDMEDLDPAVL 309
>gnl|CDD|223779 COG0707, MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine
transferase [Cell envelope biogenesis, outer membrane].
Length = 357
Score = 37.7 bits (88), Expect = 9e-04
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 10 LFITHGGIHSSMEAVYHGVPVVMMP--GFSDQHQ--NCKLMEEKGMGLITPHETITGDIL 65
L I+ G + E + GVP +++P +D HQ N K +E+ G L+ +T + L
Sbjct: 255 LVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKL 314
Query: 66 YITIREVLNNP 76
I +L+NP
Sbjct: 315 AELILRLLSNP 325
>gnl|CDD|177857 PLN02207, PLN02207, UDP-glycosyltransferase.
Length = 468
Score = 36.6 bits (84), Expect = 0.002
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM 46
H+ F++H G +S +E+++ GVP+V P +++Q N LM
Sbjct: 347 AHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLM 389
>gnl|CDD|233284 TIGR01133, murG, undecaprenyldiphospho-muramoylpentapeptide
beta-N-acetylglucosaminyltransferase. RM 8449890 RT The
final step of peptidoglycan subunit assembly in
Escherichia coli occurs in the cytoplasm. RA Bupp K, van
Heijenoort J. RL J Bacteriol 1993 Mar;175(6):1841-3
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 348
Score = 34.6 bits (80), Expect = 0.010
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 22 EAVYHGVPVVMMP---GFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPRY 78
E GVP +++P DQ+ N K +E+ G GL+ + + + L + ++L +P
Sbjct: 265 ELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPA- 323
Query: 79 RDTVGRLSKQVRSL 92
+ +++ R L
Sbjct: 324 --NLEAMAEAARKL 335
>gnl|CDD|217893 pfam04101, Glyco_tran_28_C, Glycosyltransferase family 28
C-terminal domain. The glycosyltransferase family 28
includes monogalactosyldiacylglycerol synthase (EC
2.4.1.46) and UDP-N-acetylglucosamine transferase (EC
2.4.1.-). Structural analysis suggests the C-terminal
domain contains the UDP-GlcNAc binding site.
Length = 167
Score = 33.8 bits (78), Expect = 0.011
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 10 LFITHGGIHSSMEAVYHGVPVVMMP--GFSDQHQ--NCKLMEEKGMGLITPHETITGDIL 65
L I+ G + E + G P +++P + +HQ N + + G L+ + +T + L
Sbjct: 75 LVISRAGAGTIAELLALGKPAILVPRPKAAGEHQDNNALELVKAGAALVLLQKELTPEKL 134
Query: 66 YITIREVLNNPRYRDTVGRLSKQVR 90
+ ++L P + + +K R
Sbjct: 135 VEALLKLLLKPLRLYEMNKAAKGSR 159
>gnl|CDD|215465 PLN02863, PLN02863, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 477
Score = 34.1 bits (78), Expect = 0.015
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM 46
HR F+TH G +S +E + GVP++ P +DQ N L+
Sbjct: 359 HRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLL 400
>gnl|CDD|99961 cd03785, GT1_MurG, MurG is an N-acetylglucosaminyltransferase, the
last enzyme involved in the intracellular phase of
peptidoglycan biosynthesis. It transfers
N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the
C4 hydroxyl of a lipid-linked N-acetylmuramoyl
pentapeptide (NAM). The resulting disaccharide is then
transported across the cell membrane, where it is
polymerized into NAG-NAM cell-wall repeat structure.
MurG belongs to the GT-B structural superfamily of
glycoslytransferases, which have characteristic N- and
C-terminal domains, each containing a typical Rossmann
fold. The two domains have high structural homology
despite minimal sequence homology. The large cleft that
separates the two domains includes the catalytic center
and permits a high degree of flexibility.
Length = 350
Score = 34.0 bits (79), Expect = 0.015
Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 27 GVPVVMMP--GFSDQHQ--NCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDTV 82
G+P +++P +D HQ N + + + G ++ P E +T + L + E+L++P +
Sbjct: 272 GLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAM 331
Query: 83 GRLSKQV 89
++ +
Sbjct: 332 AEAARSL 338
>gnl|CDD|178364 PLN02764, PLN02764, glycosyltransferase family protein.
Length = 453
Score = 33.9 bits (77), Expect = 0.019
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDI 64
H + F++H G S E++ +V++P DQ N +L+ ++ + TG
Sbjct: 333 HPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWF 392
Query: 65 LYITIREVLNNPRYRDT-VGRLSKQVRSLPYSNLDQAVRWAEHVAANKGVLGY 116
++R+ +N+ RD+ +G L K+ +W E +A+ + GY
Sbjct: 393 SKESLRDAINSVMKRDSEIGNLVKK----------NHTKWRETLASPGLLTGY 435
>gnl|CDD|178032 PLN02410, PLN02410, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 451
Score = 33.5 bits (76), Expect = 0.024
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLME 47
F +H G +S++E++ GVP++ P SDQ N + +E
Sbjct: 346 FWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLE 382
>gnl|CDD|178584 PLN03007, PLN03007, UDP-glucosyltransferase family protein.
Length = 482
Score = 33.3 bits (76), Expect = 0.026
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM 46
F+TH G +S +E V G+P+V P ++Q N KL+
Sbjct: 367 FVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLV 402
>gnl|CDD|224436 COG1519, KdtA, 3-deoxy-D-manno-octulosonic-acid transferase [Cell
envelope biogenesis, outer membrane].
Length = 419
Score = 32.6 bits (75), Expect = 0.037
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIR 70
+ GG H+ +E G PV+ P + + + + G GL + + +
Sbjct: 327 LVPIGG-HNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVEDADLLAKAVEL--- 382
Query: 71 EVLNNPRYRDTVGR 84
+L + R+ GR
Sbjct: 383 -LLADEDKREAYGR 395
>gnl|CDD|215112 PLN02167, PLN02167, UDP-glycosyltransferase family protein.
Length = 475
Score = 31.7 bits (72), Expect = 0.082
Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNC-KLMEEKGMGL 53
H+ F++H G +S +E+++ GVP+ P +++Q N +++E G+ +
Sbjct: 356 HKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAV 405
>gnl|CDD|235589 PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase;
Reviewed.
Length = 425
Score = 31.7 bits (73), Expect = 0.089
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIR 70
+ GG H+ +E GVPV+ P + + + + + G + + L +
Sbjct: 329 LVKRGG-HNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVE----DAEDLAKAVT 383
Query: 71 EVLNNPRYR 79
+L +P R
Sbjct: 384 YLLTDPDAR 392
>gnl|CDD|234825 PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N-
acetylglucosaminyltransferase; Provisional.
Length = 357
Score = 30.1 bits (69), Expect = 0.28
Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 27 GVPVVMMPGF---SDQHQ--NCKLMEEKGMGLITPHETITGDILYITIREVLNNPRYRDT 81
G+P +++P +D HQ N + + + G L+ P +T + L + E+L++P +
Sbjct: 272 GLPAILVP-LPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEA 330
Query: 82 VGRLSKQV 89
+ ++ +
Sbjct: 331 MAEAARAL 338
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 28.8 bits (65), Expect = 0.75
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 27 GVPVVMM-PGFSDQHQNCKLM 46
GV + M P + D QN KLM
Sbjct: 270 GVTIFMQVPSYGDALQNFKLM 290
>gnl|CDD|215305 PLN02562, PLN02562, UDP-glycosyltransferase.
Length = 448
Score = 29.1 bits (65), Expect = 0.75
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK 49
H+ ++TH G +S+MEA+ ++ P DQ NC + +
Sbjct: 344 HQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDV 388
>gnl|CDD|215979 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.
Mutations in this domain of human PIGA lead to disease
(Paroxysmal Nocturnal haemoglobinuria). Members of this
family transfer activated sugars to a variety of
substrates, including glycogen, Fructose-6-phosphate and
lipopolysaccharides. Members of this family transfer
UDP, ADP, GDP or CMP linked sugars. The eukaryotic
glycogen synthases may be distant members of this
family.
Length = 158
Score = 28.4 bits (64), Expect = 0.75
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 20/93 (21%)
Query: 6 RNCKLFIT-----HGGIHSSMEAVYHGVPVVM--MPGFSDQHQNCKLMEEKGMGLITPHE 58
R LF+ G+ +EA+ GVPV+ + G ++ ++++ GL+
Sbjct: 77 RIADLFVLPSRYEGFGL-VLLEAMAAGVPVIATDVGGPAE------IVKDGETGLLVD-- 127
Query: 59 TITGDILYIT--IREVLNNPRYRDTVGRLSKQV 89
GD + I ++L + R+ +G +++
Sbjct: 128 --PGDAEALAEAIEKLLKDEELRERLGENARKR 158
>gnl|CDD|182060 PRK09755, PRK09755, putative ABC transporter periplasmic-binding
protein; Provisional.
Length = 535
Score = 29.0 bits (64), Expect = 0.87
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 67 ITIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAANKGVLGYTPAAQQTSVM 126
IT R+ NP+YRD + +QV Y LD +V A + L + PA Q ++
Sbjct: 223 ITARK---NPKYRDAQHTVLQQVE---YLALDNSVTGYNRYRAGEVDLTWVPAQQIPAIE 276
Query: 127 RLLEG-----PRFDS 136
+ L G PR +S
Sbjct: 277 KSLPGELRIIPRLNS 291
>gnl|CDD|222294 pfam13658, UCH37_bd, Ubiquitin C-terminal hydrolase 37 receptor
binding site. This domain appears frequently at the
C-terminus of Proteasom_Rpn13, pfam04683. It is a
proteasome subunit that binds the de-ubiquitinating
enzyme, UCH37.
Length = 96
Score = 26.0 bits (58), Expect = 3.1
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 68 TIREVLNNPRYRDTVGRLSKQVRS 91
+RE+L +P+++ + LS+ +RS
Sbjct: 41 DLREMLRSPQFKQALASLSQALRS 64
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 27.4 bits (61), Expect = 3.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 7/28 (25%)
Query: 76 PRYRDTVGRLSKQVRSLPYSNLDQAVRW 103
PRYRD +G L +Q +L QA +W
Sbjct: 3426 PRYRDYIGWLQRQ-------DLAQARQW 3446
>gnl|CDD|146299 pfam03586, Herpes_UL36, Herpesvirus UL36 tegument protein. The
UL36 open reading frame (ORF) encodes the largest herpes
simplex virus type 1 (HSV-1) protein, a 270-kDa
polypeptide designated VP1/2, which is also a component
of the virion tegument. A null mutation in the UL36 gene
of herpes simplex virus type 1 results in accumulation
of unenveloped DNA-filled capsids in the cytoplasm of
infected cells. This family only covers a small central
part of this large protein.
Length = 253
Score = 26.9 bits (60), Expect = 3.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 75 NPRYRDTVGRLSKQVRSLP 93
N Y D VG LS + ++P
Sbjct: 136 NIDYYDAVGTLSGDLLAVP 154
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 26.8 bits (60), Expect = 3.9
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 10 LFITHGGIHSSMEAVYHGVPVVMMPGFS 37
L HG ++ ++ G V +P F
Sbjct: 138 LHHVHGLFNALHCPLWAGASVEFLPRFD 165
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 26.9 bits (60), Expect = 3.9
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 27/88 (30%)
Query: 12 ITHGGIHSSMEAVY--------HGVPVVMMPGFSDQHQNCKLMEEKGM-GLITPHETITG 62
ITHG ++++ EA++ V V +P F D M GM G +T
Sbjct: 172 ITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHD-------M---GMVGFLTVPMYFGA 221
Query: 63 DILYITIREVLNNP--------RYRDTV 82
+++ +T + L +P +YR T+
Sbjct: 222 ELVKVTPMDFLRDPLLWAELISKYRGTM 249
>gnl|CDD|132759 cd07074, NR_LBD_PR, Ligand binding domain of the progesterone
receptor, a member of the nuclear hormone receptor. The
ligand binding domain of the progesterone receptor (PR):
PR is a member of the nuclear receptor superfamily of
ligand dependent transcription factors, mediating the
biological actions of progesterone. PR functions in a
variety of biological processes including development of
the mammary gland, regulating cell cycle progression,
protein processing, and metabolism. When no binding
hormone is present the carboxyl terminal inhibits
transcription. Binding to a hormone induces a structural
change that removes the inhibitory action. After
progesterone binds to the receptor, PR forms a dimer and
the complex enters the nucleus where it interacts with
the hormone response element (HRE) in the promoters of
progesterone responsive genes and alters their
transcription. In addition, rapid actions of PR that
occur independent of transcription, have also been
observed in several tissues like brain, liver, mammary
gland and spermatozoa. There are two natural PR isoforms
called PR-A and PR-B. PR-B has an additional stretc h of
164 amino acids at the N terminus. The extra domain in
PR-B performs activation functions by recruiting
coactivators that could not be recruited by PR-A. Like
other members of the nuclear receptor (NR) superfamily
of ligand-activated transcription factors, PR has a
central well conserved DNA binding domain (DBD), a
variable N-terminal domain, a flexible hinge and a
C-terminal ligand binding domain (LBD). The LBD is not
only involved in binding to progesterone, but also
involved in coactivator binding and dimerization.
Length = 248
Score = 26.8 bits (59), Expect = 4.0
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 33 MPGFSDQHQN--CKLMEEKGMGLIT------PHETITGDILYITIREVLNNPRYRDT 81
+PGF + H + L++ M L+ ++ ++G +LY +LN R +++
Sbjct: 51 LPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKES 107
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large
N-terminal subdomain and a smaller C-terminal
subdomain.
Length = 338
Score = 26.9 bits (60), Expect = 4.3
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 10 LFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLME 47
LF GG + A+ G VV+ GF +L+E
Sbjct: 50 LFHVVGGGSGLLGALLAGGTVVLYEGFPFPLSFLELIE 87
>gnl|CDD|163645 cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related
proteins, metallophosphatase domain. GpdQ
(glycerophosphodiesterase Q, also known as Rv0805 in
Mycobacterium tuberculosis) is a binuclear
metallophosphoesterase from Enterobacter aerogenes that
catalyzes the hydrolysis of mono-, di-, and triester
substrates, including some organophosphate pesticides
and products of the degradation of nerve agents. The
GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide
phosphodiesterase activity. GpdQ and Rv0805 belong to
the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 240
Score = 26.0 bits (58), Expect = 6.4
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPG 35
H N + I G +H ++ + G+P++ P
Sbjct: 179 RHPNVRA-ILCGHVHRPIDGSWGGIPLLTAPS 209
>gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated.
Length = 398
Score = 26.3 bits (58), Expect = 6.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQH 40
+T+ G H S ++ VPV++M G S +
Sbjct: 210 LMTYEGKHVSPGSLTKDVPVIVMNGLSKVY 239
>gnl|CDD|233704 TIGR02064, dsrA, sulfite reductase, dissimilatory-type alpha
subunit. Dissimilatory sulfite reductase catalyzes the
six-electron reduction of sulfite to sulfide, as the
terminal reaction in dissimilatory sulfate reduction. It
remains unclear however, whether trithionate and
thiosulfate serve as intermediate compounds to sulfide,
or as end products of sulfite reduction. Sulfite
reductase is a multisubunit enzyme composed of dimers of
either alpha/beta or alpha/beta/gamma subunits, each
containing a siroheme and iron sulfur cluster prosthetic
center. Found in sulfate-reducing bacteria, these genes
are commonly located in an unidirectional gene cluster.
This model describes the alpha subunit of sulfite
reductase [Central intermediary metabolism, Sulfur
metabolism].
Length = 402
Score = 26.0 bits (57), Expect = 7.2
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 41 QNCKLMEEKGMGLITPHETITGDILYITIR-EVLNN 75
Q C + E+ G GL H TGDI+++ + L
Sbjct: 101 QLCDVWEKYGSGLTNFHGQ-TGDIVFLGTQTPQLQE 135
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.412
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,976,397
Number of extensions: 609743
Number of successful extensions: 627
Number of sequences better than 10.0: 1
Number of HSP's gapped: 624
Number of HSP's successfully gapped: 55
Length of query: 136
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 49
Effective length of database: 7,078,804
Effective search space: 346861396
Effective search space used: 346861396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)