RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1202
(136 letters)
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 128 bits (324), Expect = 5e-39
Identities = 31/87 (35%), Positives = 51/87 (58%)
Query: 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGD 63
GH + FITHGG + EA+YHG+P+V +P F+DQ N M+ +G + T++
Sbjct: 83 GHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSST 142
Query: 64 ILYITIREVLNNPRYRDTVGRLSKQVR 90
L ++ V+N+P Y++ V +LS+
Sbjct: 143 DLLNALKRVINDPSYKENVMKLSRIQH 169
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 113 bits (285), Expect = 5e-31
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYI 67
FITH G+ S+MEA+ + VP+V +P ++Q N + + E G+G P + +T + L
Sbjct: 322 ASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLRE 381
Query: 68 TIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAANKG 112
+ V ++P + + + +++R A E + A G
Sbjct: 382 AVLAVASDPGVAERLAAVRQEIREAG--GARAAADILEGILAEAG 424
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 110 bits (277), Expect = 6e-30
Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 3/128 (2%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYI 67
LF+TH G S E + P++ +P DQ N +++ G+ E T D+L
Sbjct: 300 ADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRE 359
Query: 68 TIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAANKGVLGYTPAAQQTSVMR 127
T ++++P + R+ ++ +A E + P + +V
Sbjct: 360 TALALVDDPEVARRLRRIQAEMAQEG--GTRRAADLIEAELPARH-ERQEPVGDRPNVGD 416
Query: 128 LLEGPRFD 135
G R D
Sbjct: 417 RPAGVRSD 424
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 103 bits (259), Expect = 2e-27
Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFS-DQHQNCKLMEEKGMGLITPHETITGDILY 66
+ +THG + +EA GVP+V++P F+ + + + + E G+G + + + +
Sbjct: 298 ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIR 357
Query: 67 ITIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAANKG 112
+ + + R+ V R+ + + S +A E
Sbjct: 358 EAVERLAADSAVRERVRRMQRDILSSG--GPARAADEVEAYLGRVA 401
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 97.5 bits (243), Expect = 4e-25
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYI 67
+ +THGG+ + MEA+Y G P+V++P D + +++ G+G + P E GD L
Sbjct: 314 ATVCVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLA 373
Query: 68 TIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAA 109
+ V +P V + VR +A E A
Sbjct: 374 AVGAVAADPALLARVEAMRGHVRRAG--GAARAADAVEAYLA 413
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 87.9 bits (218), Expect = 1e-21
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYI 67
C + HGG S A HGVP V++P D + +E G G+ P +T D L
Sbjct: 336 CAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRE 395
Query: 68 TIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAA 109
+++ VL++P +R R+ + + P + + V E +AA
Sbjct: 396 SVKRVLDDPAHRAGAARMRDDMLAEP--SPAEVVGICEELAA 435
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 87.4 bits (217), Expect = 2e-21
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYI 67
L + HGG +++ A+ GVP + P D N + + + G G + I+ D +
Sbjct: 309 VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSG 368
Query: 68 TIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAA 109
+ +L YR ++ ++ ++P D+ VR A+
Sbjct: 369 AAKRLLAEESYRAGARAVAAEIAAMP--GPDEVVRLLPGFAS 408
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 85.2 bits (211), Expect = 1e-20
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYI 67
C L + H G S++ + GVP +++P S + + + G + + + +
Sbjct: 280 CDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIAD 339
Query: 68 TIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAA 109
+ +E+ Y LS+++ +P V E +A
Sbjct: 340 SCQELQAKDTYARRAQDLSREISGMP--LPATVVTALEQLAH 379
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 81.8 bits (202), Expect = 2e-19
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYI 67
C+L I GG ++ A G+P +++P + DQ + + G G+ P E D
Sbjct: 287 CELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQF 346
Query: 68 T--IREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAANKG 112
T I VL + + +LS ++ ++P + VR E+ AA +
Sbjct: 347 TDSIATVLGDTGFAAAAIKLSDEITAMP--HPAALVRTLENTAAIRA 391
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 79.8 bits (197), Expect = 1e-18
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYI 67
C + + HGG +++ + GVP V +P ++ + +L+ G G+ P E + +
Sbjct: 301 CDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLA 360
Query: 68 TIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEH 106
+ ++ Y RL+ ++ +LP VR E
Sbjct: 361 ACARIRDDSSYVGNARRLAAEMATLP--TPADIVRLIEQ 397
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 74.1 bits (182), Expect = 1e-16
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCK--LMEEKGMGLITPHETITGDIL 65
C + HGG + M A+ G+P ++ P DQ Q+ + +G+GL++ + + D
Sbjct: 300 CTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDAD-- 357
Query: 66 YITIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAA 109
+R ++ + R + +++ +LP + + R E ++
Sbjct: 358 --LLRRLIGDESLRTAAREVREEMVALP-TPAETVRRIVERISG 398
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 66.8 bits (163), Expect = 4e-14
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 3/107 (2%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYI 67
I HGG ++ A G P +++P +DQ + E G+G+ T D L
Sbjct: 302 VAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSA 361
Query: 68 TIREVLNNPRYRDTVGRLSKQVRSLPYSNLDQAVRWAEHVAANKGVL 114
+ L P ++ +R+ A + V+ K +
Sbjct: 362 ALATAL-TPETHARATAVAGTIRT--DGAAVAARLLLDAVSREKPTV 405
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 66.4 bits (162), Expect = 6e-14
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDI 64
+ HGG ++ G P V++P +DQ + + G+G+ T T +
Sbjct: 282 FGRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVES 341
Query: 65 LYITIREVLNNPRYRDTVGRLSKQVRS 91
L + L P R ++ +R+
Sbjct: 342 LSAALATAL-TPGIRARAAAVAGTIRT 367
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 62.9 bits (153), Expect = 9e-13
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYI 67
I HG + A GVP +++P +DQ + G+G+ T T + L
Sbjct: 303 VAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSA 362
Query: 68 TIREVLNNPRYRDTVGRLSKQVRS 91
+ VL P R ++ V +
Sbjct: 363 ALTTVL-APETRARAEAVAGMVLT 385
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 57.2 bits (139), Expect = 9e-11
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK-GMGLITPHETITGDILYITI 69
F+TH G +S E+V GVP++ P F DQ N +++E+ +G+ T L
Sbjct: 347 FVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCF 406
Query: 70 REVL 73
++L
Sbjct: 407 DQIL 410
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 55.3 bits (134), Expect = 3e-10
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK-GMGLITPHETITGDILYITI 69
F+TH G +S +E + GVP++ P F DQ N L E +G+ + +T + + +
Sbjct: 349 FLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKAL 408
Query: 70 REVL 73
+
Sbjct: 409 ELTM 412
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 55.0 bits (133), Expect = 4e-10
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIR 70
F+TH G +S+ E++ GVP++ P F+DQ +C+ + + + + + L I
Sbjct: 375 FLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAKLIN 434
Query: 71 EVLNNPR---YRDTVGRLSKQVR 90
EV+ + + L K+
Sbjct: 435 EVIAGDKGKKMKQKAMELKKKAE 457
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 54.2 bits (131), Expect = 1e-09
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK-GMGL 53
F+TH G +S++E+V G+P++ P +++Q N L+ E L
Sbjct: 361 FLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAAL 404
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 53.8 bits (130), Expect = 1e-09
Identities = 14/44 (31%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK-GMGL 53
F++H G +S +E+++ GVP++ P +++Q N + ++ G+GL
Sbjct: 354 FVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGL 397
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like
fold, endoplasmic reticulum, glycosyltransferase,
structural genomics; NMR {Saccharomyces cerevisiae} PDB:
2ks6_A
Length = 224
Score = 34.8 bits (79), Expect = 0.004
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPG--FSDQHQ--NCKLMEEKG 50
L I+H G S ++++ P+++ D HQ E G
Sbjct: 130 RDYSDLVISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELG 179
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.022
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 40/122 (32%)
Query: 48 EKGMG--LITPHETI----------TGDILYITIRE-VLNNPRYRDTV---GRLSKQVR- 90
E+GMG L + D +I + V+NNP T+ G K++R
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV-NLTIHFGGEKGKRIRE 1686
Query: 91 ---SLPYSNLDQAVRWAEHVAAN-------------KGVLGYT----PA--AQQTSVMRL 128
++ + + E + KG+L T PA + +
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 129 LE 130
L+
Sbjct: 1747 LK 1748
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB:
3hbn_A*
Length = 282
Score = 32.0 bits (71), Expect = 0.041
Identities = 6/53 (11%), Positives = 13/53 (24%), Gaps = 1/53 (1%)
Query: 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGL 53
+ I EA+ + +Q + +KG +
Sbjct: 219 IAKLMNESNKLIISASS-LVNEALLLKANFKAICYVKNQESTATWLAKKGYEV 270
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase;
KDTA, GSEA, glycosyltransferase superfamily B,; HET:
PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Length = 374
Score = 31.8 bits (73), Expect = 0.052
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIR 70
F+ GG H+ +E G+PV+ P + + +E++G G +E L +
Sbjct: 287 FVNIGG-HNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNE----TELVTKLT 341
Query: 71 EVLNNPRYRDTVGRLSK 87
E+L+ + + +
Sbjct: 342 ELLSVKKEIKVEEKSRE 358
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A
{Actinobacillus pleuropneumoniae serovaorganism_taxid}
PDB: 3q3h_A* 3q3i_A
Length = 631
Score = 29.5 bits (66), Expect = 0.38
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 14 HGGIHSSMEAVYHGVPVVMMPGFS 37
G + ++ V G+ V G
Sbjct: 528 FGNTNGIIDMVTLGLVGVCKTGAE 551
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 29.0 bits (65), Expect = 0.51
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 19 SSMEAVYHGVPVVMMPGFS 37
++ +A++ G PV+ PG +
Sbjct: 468 TASDALWTGCPVLTTPGET 486
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase,
phosphatase, metal ION; 1.90A {Enterobacter aerogenes}
SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Length = 274
Score = 27.5 bits (61), Expect = 1.5
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQ 39
+ I G HS Y + +PG Q
Sbjct: 185 FPSLTR-IFCGHNHSLTMTQYRQALISTLPGTVHQ 218
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 27.5 bits (62), Expect = 1.6
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 10 LFITH-GGIHSSMEAVYHGVPVVMMPGF 36
+F H + + + + GV ++ MP F
Sbjct: 220 MF--HVAALTTVIFSAMRGVTLISMPQF 245
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 26.8 bits (60), Expect = 2.6
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 10 LFITH-GGIHSSMEAVYHGVPVVMMPGF 36
++ H G+ + AV G V ++ F
Sbjct: 213 IY--HISGLSVLLRAVIEGFTVRIVDKF 238
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 26.3 bits (57), Expect = 4.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 14 HGGIHSSMEAVYHGVPVVMMPG 35
G + M+ ++ G P+V MPG
Sbjct: 609 CNGHTTGMDVLWAGTPMVTMPG 630
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold,
swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium
tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Length = 330
Score = 25.3 bits (55), Expect = 7.2
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQ 41
+ + I G +H S A + G+PV +
Sbjct: 209 GTDVRA-ILAGHLHYSTNATFVGIPVSVASATCYTQD 244
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 25.6 bits (57), Expect = 7.2
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 3/28 (10%)
Query: 10 LFITH-GGIHSSMEAVYHGVPVVMMPGF 36
LF H G+ + G V+ F
Sbjct: 210 LF--HVTGLGLMLTLQQAGGASVIAAKF 235
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 25.3 bits (56), Expect = 8.9
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 16 GIHSSMEAVYHGVPVVMMPGF 36
G+ +++ + G VV+M F
Sbjct: 248 GMFTTLGYLICGFRVVLMYRF 268
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 25.2 bits (56), Expect = 8.9
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 16 GIHSSMEAVYHGVPVVMMPGF 36
G+ +++ + G VVM+ F
Sbjct: 250 GMFTTLGYLICGFRVVMLTKF 270
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 25.3 bits (56), Expect = 9.2
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 10 LFITHGGIHSSMEAVYHGVPVVMMPGFS 37
LF HG + + + G V + FS
Sbjct: 205 LFHVHGLVLGILGPLRRGGSVRHLGRFS 232
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.412
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,149,977
Number of extensions: 119877
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 37
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.9 bits)