RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12021
(106 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 36.6 bits (84), Expect = 2e-05
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 53 FPCEVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 103
+PC+ CGK + +K RH Y C C + K L HM I
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHMKI 52
Score = 24.6 bits (53), Expect = 0.86
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 47 QYNSGMFPCEVCGKKYKYKWGLSRHKR 73
+ C VCGKK+K K L H +
Sbjct: 25 HLGLRPYGCGVCGKKFKMKHHLVGHMK 51
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 32.6 bits (75), Expect = 6e-04
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 82 YQCPQCPYRASQKATLKTHMAIKHS 106
Y+C C R +Q T+K H+ KH+
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHT 33
Score = 24.9 bits (55), Expect = 0.51
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 53 FPCEVCGKKYKYKWGLSRHKR 73
+ C +C ++ + H
Sbjct: 9 YECYICHARFTQSGTMKMHIL 29
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 30.9 bits (70), Expect = 0.003
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 70 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 103
R + + + Y+C +C S + L H
Sbjct: 2 RSEWQQRERRR-YKCDECGKSFSHSSDLSKHRRT 34
Score = 23.2 bits (50), Expect = 2.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 53 FPCEVCGKKYKYKWGLSRHKR 73
+ C+ CGK + + LS+H+R
Sbjct: 13 YKCDECGKSFSHSSDLSKHRR 33
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 30.5 bits (68), Expect = 0.004
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 82 YQCPQCPYRASQKATLKTHMAIKHS 106
YQC C +R++ + LKTH+ KHS
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHS 27
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 30.4 bits (69), Expect = 0.004
Identities = 9/27 (33%), Positives = 9/27 (33%)
Query: 79 EPKYQCPQCPYRASQKATLKTHMAIKH 105
E Y C C QK L H H
Sbjct: 6 EKPYACSHCDKTFRQKQLLDMHFKRYH 32
Score = 26.6 bits (59), Expect = 0.11
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 53 FPCEVCGKKYKYKWGLSRHKR 73
+ C C K ++ K L H +
Sbjct: 9 YACSHCDKTFRQKQLLDMHFK 29
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 30.0 bits (68), Expect = 0.008
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 82 YQCPQCPYRASQKATLKTHMAIKHS 106
Y C C S+ L H+ H+
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHT 30
Score = 27.3 bits (61), Expect = 0.081
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 53 FPCEVCGKKYKYKWGLSRHKRDECGQEPKYQC 84
+ C+ CGK + L+ H + E ++C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 29.1 bits (66), Expect = 0.012
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 82 YQCPQCPYRASQKATLKTHMAI 103
Y C +C S+ + L H +
Sbjct: 8 YGCVECGKAFSRSSILVQHQRV 29
Score = 27.6 bits (62), Expect = 0.048
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 53 FPCEVCGKKYKYKWGLSRHKR 73
+ C CGK + L +H+R
Sbjct: 8 YGCVECGKAFSRSSILVQHQR 28
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 28.8 bits (65), Expect = 0.015
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 82 YQCPQCPYRASQKATLKTHMAI 103
+ CP+CP R + L H+
Sbjct: 3 FACPECPKRFMRSDHLSKHIKT 24
Score = 26.9 bits (60), Expect = 0.083
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 53 FPCEVCGKKYKYKWGLSRHKR 73
F C C K++ LS+H +
Sbjct: 3 FACPECPKRFMRSDHLSKHIK 23
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 28.0 bits (63), Expect = 0.028
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 82 YQCPQCPYRASQKATLKTHMAI 103
+ C C +++ LK H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS 24
Score = 28.0 bits (63), Expect = 0.032
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 53 FPCEVCGKKYKYKWGLSRHKR 73
F CEVC + + + L RH R
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR 23
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 28.2 bits (63), Expect = 0.029
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 71 HKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 103
R G +P +QCP C S+ L H
Sbjct: 2 STRGSTGIKP-FQCPDCDRSFSRSDHLALHRKR 33
Score = 23.9 bits (52), Expect = 1.1
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 53 FPCEVCGKKYKYKWGLSRHKR 73
F C C + + L+ H++
Sbjct: 12 FQCPDCDRSFSRSDHLALHRK 32
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 27.6 bits (62), Expect = 0.044
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 82 YQCPQCPYRASQKATLKTHMAI 103
+QC C S+ L TH+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRT 25
Score = 26.4 bits (59), Expect = 0.13
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 53 FPCEVCGKKYKYKWGLSRHKR 73
F C +C + + L+ H R
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR 24
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 27.7 bits (61), Expect = 0.053
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 55 CEVCGKKYKYKWGLSRHKRDECGQEP 80
CE+CGK ++ + L+RHK G++P
Sbjct: 8 CEICGKIFRDVYHLNRHKLSHSGEKP 33
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 26.6 bits (59), Expect = 0.13
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 79 EPKYQCPQCPYRASQKATLKTHMAI 103
+ + C C + KA H+ +
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKV 29
Score = 26.3 bits (58), Expect = 0.16
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 53 FPCEVCGKKYKYKWGLSRHKR 73
F C +C + K +RH +
Sbjct: 8 FVCRICLSAFTTKANCARHLK 28
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.2 bits (57), Expect = 0.17
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 81 KYQCPQCPYRASQKATLKTHMAIKHS 106
K+ CP C ++K+ L H+ +HS
Sbjct: 2 KFHCPHCDTVIARKSDLGVHLRKQHS 27
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.2 bits (58), Expect = 0.19
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 54 PCEVCGKKYKYKWGLSRHKRDECGQEPKYQC 84
P CGK + +K L H + Y C
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRD-YIC 34
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 24.1 bits (53), Expect = 0.80
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 53 FPCEVCGKKYKYKWGLSRHKR 73
+ C CGK + GL H+R
Sbjct: 3 YKCLECGKAFSQNSGLINHQR 23
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 23.0 bits (50), Expect = 2.1
Identities = 5/24 (20%), Positives = 9/24 (37%), Gaps = 2/24 (8%)
Query: 82 YQC--PQCPYRASQKATLKTHMAI 103
+ C C R ++ L+ H
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRT 26
Score = 22.7 bits (49), Expect = 3.6
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 54 PCEVCGKKYKYKWGLSRHKR 73
CGK++ L RHKR
Sbjct: 6 TWSYCGKRFTRSDELQRHKR 25
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 23.0 bits (49), Expect = 3.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 50 SGMFPCEVCGKKYKYKWGLSRHK 72
+G+ PC +CGK + L +H+
Sbjct: 4 AGILPCGLCGKVFTDANRLRQHE 26
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 22.7 bits (49), Expect = 3.5
Identities = 7/18 (38%), Positives = 7/18 (38%)
Query: 56 EVCGKKYKYKWGLSRHKR 73
E C K Y L H R
Sbjct: 8 EGCRKSYSRLENLKTHLR 25
Score = 21.5 bits (46), Expect = 8.8
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 82 YQCPQ--CPYRASQKATLKTHMAI 103
++C C S+ LKTH+
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHLRS 26
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 72
Score = 23.3 bits (50), Expect = 4.3
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 17/77 (22%)
Query: 14 TSITETCIVIRSLGVDKSLDTNVLNFINWPTVRQYNSGMFPCEVCGKKYKYKWGLSRHKR 73
T+I ET V++ +G D +L P C C + + S+ +R
Sbjct: 1 TNIGETAGVVQDIGSDPTL----------PRSD------RECPKCHSRENVFFQ-SQQRR 43
Query: 74 DECGQEPKYQCPQCPYR 90
+ + C C +
Sbjct: 44 KDTSMVLFFVCLSCSHI 60
>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.0 bits (46), Expect = 5.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 83 QCPQCPYRASQKATLKTHMAI 103
+C +C Y S KA L+ H I
Sbjct: 4 KCSECSYSCSSKAALRIHERI 24
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 21.7 bits (46), Expect = 6.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 53 FPCEVCGKKYKYKWGLSRHKR 73
F C++CG+K+ RH +
Sbjct: 4 FACDICGRKFARSDERKRHTK 24
>d1kuta_ d.143.1.1 (A:) SAICAR synthase {Thermotoga maritima [TaxId:
2336]}
Length = 224
Score = 23.1 bits (49), Expect = 7.7
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 33 DTNVLNFINWPTVRQYNSGMFPCEVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYR 90
T+++ +I T++ MFP EV + K R G++ + +
Sbjct: 54 KTHLVEYIPPRTLKVIPLKMFPLEVVVRLKKAG-SFVRRYGGAEGEDLPVPLVEFFIK 110
>d2ghfa2 g.37.1.1 (A:9-44) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 21.6 bits (45), Expect = 8.1
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 78 QEPKYQCPQCPYRASQKATLKTHMAIKH 105
E Y+C C ++ H+ +H
Sbjct: 7 VEGGYECKYCTFQTPDLNMFTFHVDSEH 34
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 22.3 bits (48), Expect = 8.5
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 51 GMFPCEVCGKKYKYKWGLSRHKR 73
G+ C C + + L H R
Sbjct: 14 GLHRCLACARYFIDSTNLKTHFR 36
>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
Length = 561
Score = 23.3 bits (50), Expect = 8.6
Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 11/41 (26%)
Query: 54 PCEVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQK 94
C CG ++ E + C C +K
Sbjct: 517 KCFTCGSTHEMTPT-----------ENGFVCSICGETDPKK 546
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 21.3 bits (44), Expect = 9.5
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 82 YQCPQCPYRASQKATLKTHMAI 103
Y+C C Y A+ ++L H+ I
Sbjct: 4 YKCKTCDYAAADSSSLNKHLRI 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.133 0.439
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 377,728
Number of extensions: 15302
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 74
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)