BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12022
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 30/114 (26%)
Query: 10 PGEKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFA 69
PGEK +AC CGK + + L H++ G++P +
Sbjct: 17 PGEK-----PYACPECGKSFSRSDHLAEHQRTHTGEKP--------------------YK 51
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLYC----PYRAKLRFNLKTHINVK 119
C CGK + K L RH++ G++P Y+C C RA LR + +TH K
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAHQRTHTGEK 104
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP---KYHGEDFS---SWPGEKQNHA--EMFACD 71
+ C CGK + K L RH++ G++P G+ FS + ++ H + +AC
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109
Query: 72 VCGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTH 115
CGK + Q L H++ G++P Y+C C NL TH
Sbjct: 110 ECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTH 152
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP---KYHGEDFSSWP---GEKQNHA--EMFACD 71
+ C CGK + Q+ L H++ G++P G+ FS ++ H + + C
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 72 VCGKEYKQKYGLNRHKKYDCGQEPKYQCLYC----PYRAKLRFNLKTHINVKHS 121
CGK + ++ L+ H++ G++P Y+C C R L + +TH K S
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVHQRTHTGKKTS 190
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 20/69 (28%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
F C +C + + Q GLN+H + G++P FACD+CG+++
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKP--------------------FACDICGRKFAT 74
Query: 80 KYGLNRHKK 88
+ +RH K
Sbjct: 75 LHTRDRHTK 83
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 23/85 (27%)
Query: 20 FACDV--CGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEY 77
+AC V C + + QK L+ H + GQ+P F C +C + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKP--------------------FQCRICMRNF 44
Query: 78 KQKYGLNRHKKYDCGQEPKYQCLYC 102
Q GLN+H + G++P + C C
Sbjct: 45 SQHTGLNQHIRTHTGEKP-FACDIC 68
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 21/106 (19%)
Query: 17 AEMFACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKE 76
+ AC++CGK ++ Y LNRHK G++P ++C VCG
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKP--------------------YSCPVCGLR 44
Query: 77 YKQKYGLNRH-KKYDCGQEPKYQCLYCPYRAKLRFNLKTHINVKHS 121
+K+K ++ H + +D Y C C +L HI HS
Sbjct: 45 FKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 69 ACDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLY--CPYRAKLRFNLKTHINV 118
C CGK + + L RH+ G++P +QC + C R L FNL+TH+ +
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTHVRI 86
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 21 ACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDV--CGKEYK 78
C CGK + + L RH+ G++P F C CGK +
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTGEKP--------------------FQCTFEGCGKRFS 75
Query: 79 QKYGLNRHKKYDCGQEPKYQCLY--CPYRAKLRFNLKTHI 116
+ L H + G P Y C + C + NLK+HI
Sbjct: 76 LDFNLRTHVRIHTGDRP-YVCPFDGCNKKFAQSTNLKSHI 114
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 20/75 (26%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
F C +C + + Q+ LN H + G++P FACD+CG+++
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKP--------------------FACDICGRKFAT 74
Query: 80 KYGLNRHKKYDCGQE 94
+ RH K Q+
Sbjct: 75 LHTRTRHTKIHLRQK 89
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 23/85 (27%)
Query: 20 FACDV--CGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEY 77
+AC V C + + QK L+ H + GQ+P F C +C + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKP--------------------FQCRICMRNF 44
Query: 78 KQKYGLNRHKKYDCGQEPKYQCLYC 102
Q+ LN H + G++P + C C
Sbjct: 45 SQQASLNAHIRTHTGEKP-FACDIC 68
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 18/27 (66%)
Query: 97 YQCLYCPYRAKLRFNLKTHINVKHSYE 123
YQC YC YR+ NLKTHI KHS E
Sbjct: 3 YQCQYCEYRSADSSNLKTHIKTKHSKE 29
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINVKH 120
C CGK ++ Y LN H + G++P Y+C +C Y A + +L+ H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 44/116 (37%), Gaps = 22/116 (18%)
Query: 25 CGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQKYGLN 84
CGK + K +RH G P + C VCGK++K K+ L
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRP--------------------YGCGVCGKKFKMKHHLV 54
Query: 85 RHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHI-NVKHSYEYIRIILRTAIMPSVSS 139
H K G +P Y+C C R R + H+ + SYE + T SS
Sbjct: 55 GHMKIHTGIKP-YECNICAKRFMWRDSFHRHVTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 20/67 (29%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
+ C VCGK++K K+ L H K G +P + C++C K +
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKP--------------------YECNICAKRFMW 77
Query: 80 KYGLNRH 86
+ +RH
Sbjct: 78 RDSFHRH 84
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 21/83 (25%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
+ C CGK + Q L +H++ G++P + C CGK + Q
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKP--------------------YKCPECGKSFSQ 44
Query: 80 KYGLNRHKKYDCGQEPKYQCLYC 102
L +H++ G++P Y+C C
Sbjct: 45 SSDLQKHQRTHTGEKP-YKCPEC 66
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 97 YQCLYCPYRAKLRFNLKTHINVKHSYE 123
YQC YC +R+ NLKTHI KHS E
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHSKE 29
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 20/69 (28%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
F C+ CGK Y+ GL+RH++ G P+ +C CGK ++
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPR--------------------SCPECGKCFRD 44
Query: 80 KYGLNRHKK 88
+ +NRH K
Sbjct: 45 QSEVNRHLK 53
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKY--QCLYCPYRAKLRFN--LKTHIN 117
F C+ CGK Y+ GL+RH++ G P+ +C C +R + N LK H N
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKC-FRDQSEVNRHLKVHQN 57
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 20 FACDV--CGKEYKQKYGLNRHKKYDCGQEP--------KYHGEDFSSWPGEKQNHAEMFA 69
+AC V C + + Q L RH + GQ+P + D + + FA
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 70 CDVCGKEYKQKYGLNRHKK 88
CD+CG+++ + RH K
Sbjct: 65 CDICGRKFARSDERKRHTK 83
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 68 FACDV--CGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINV 118
+AC V C + + Q L RH + GQ+P +QC C +L THI
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRT 56
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 97 YQCLYCPYRAKLRFNLKTHINVKHSYE 123
YQC YC R+ NLKTHI KHS E
Sbjct: 3 YQCQYCEXRSADSSNLKTHIKTKHSKE 29
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 97 YQCLYCPYRAKLRFNLKTHINVKHSYE 123
YQC YC R+ NLKTHI KHS E
Sbjct: 3 YQCQYCELRSADSSNLKTHIKTKHSKE 29
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 20/83 (24%)
Query: 13 KQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDV 72
+Q + CD CGK + L++H++ G++P + CD
Sbjct: 12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP--------------------YKCDE 51
Query: 73 CGKEYKQKYGLNRHKKYDCGQEP 95
CGK + Q+ L H + G P
Sbjct: 52 CGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 16 HAEMFACDV--CGKEYKQKYGLNRHKKYDCGQEP--------KYHGEDFSSWPGEKQNHA 65
H +AC V C + + + L RH + GQ+P + D +
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 66 EMFACDVCGKEYKQKYGLNRHKK 88
+ FACD+CG+++ + RH K
Sbjct: 61 KPFACDICGRKFARSDERKRHTK 83
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 64 HAEMFACDV--CGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINV 118
H +AC V C + + + L RH + GQ+P +QC C +L THI
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRT 56
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 20 FACDV--CGKEYKQKYGLNRHKKYDCGQEP--------KYHGEDFSSWPGEKQNHAEMFA 69
+AC V C + + + L RH + GQ+P + D + + FA
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 70 CDVCGKEYKQKYGLNRHKK 88
CD+CG+++ + RH K
Sbjct: 65 CDICGRKFARSDERKRHTK 83
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 68 FACDV--CGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINV 118
+AC V C + + + L RH + GQ+P +QC C +L THI
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRT 56
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 20 FACDV--CGKEYKQKYGLNRHKKYDCGQEP--------KYHGEDFSSWPGEKQNHAEMFA 69
+AC V C + + L RH + GQ+P + D + + FA
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 70 CDVCGKEYKQKYGLNRHKK 88
CD+CG+++ + RH K
Sbjct: 65 CDICGRKFARSDERKRHTK 83
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 68 FACDV--CGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINV 118
+AC V C + + L RH + GQ+P +QC C +L THI
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRT 56
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 20 FACDV--CGKEYKQKYGLNRHKKYDCGQEP--------KYHGEDFSSWPGEKQNHAEMFA 69
+AC V C + + + L RH + GQ+P + D + + FA
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQE 94
CD+CG+++ + RH K Q+
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 68 FACDV--CGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINV 118
+AC V C + + + L RH + GQ+P +QC C +L THI
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRT 56
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 33.9 bits (76), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 21/96 (21%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
F C +CGK +K+ L+ H P + C CGK + Q
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP--------------------YPCQYCGKRFHQ 41
Query: 80 KYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTH 115
K + +H G++P ++C C NL TH
Sbjct: 42 KSDMKKHTFIHTGEKP-HKCQVCGKAFSQSSNLITH 76
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 20/73 (27%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
+ C CGK + QK + +H G++P C VCGK + Q
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPH--------------------KCQVCGKAFSQ 69
Query: 80 KYGLNRHKKYDCG 92
L H + G
Sbjct: 70 SSNLITHSRKHTG 82
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 18/102 (17%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
F C CGK Y +K L H+ +C + ++F C VC + +++
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSE-----------------QVFTCSVCQETFRR 78
Query: 80 KYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINVKHS 121
+ L H G+ P Y+C C + + +L++H+ HS
Sbjct: 79 RMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLHS 119
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 11 GEKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEP 47
G + AC++CGK ++ Y LNRHK G++P
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKP 40
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 59 GEKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEP 95
G + AC++CGK ++ Y LNRHK G++P
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKP 40
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 33.1 bits (74), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 20 FACDV--CGKEYKQKYGLNRHKKYDCGQEP--------KYHGEDFSSWPGEKQNHAEMFA 69
+AC V C + + + L RH + GQ+P + D + + FA
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 70 CDVCGKEYKQKYGLNRHKK 88
CD+CG+++ + RH K
Sbjct: 64 CDICGRKFARSDERKRHTK 82
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 68 FACDV--CGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINV 118
+AC V C + + + L RH + GQ+P +QC C +L THI
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRT 55
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 20 FACDV--CGKEYKQKYGLNRHKKYDCGQEP--------KYHGEDFSSWPGEKQNHAEMFA 69
+AC V C + + + L RH + GQ+P + D + + FA
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 70 CDVCGKEYKQKYGLNRHKK 88
CD+CG+++ + RH K
Sbjct: 65 CDICGRKFARSDERKRHTK 83
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 68 FACDV--CGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINV 118
+AC V C + + + L RH + GQ+P +QC C +L THI
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRT 56
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 32.3 bits (72), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 16/27 (59%)
Query: 97 YQCLYCPYRAKLRFNLKTHINVKHSYE 123
YQC YC R NLKTHI KHS E
Sbjct: 3 YQCQYCEKRFADSSNLKTHIKTKHSKE 29
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 32.3 bits (72), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 21/95 (22%)
Query: 22 CDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQKY 81
C+VCGK + +K L H + G +P + C C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKP--------------------YKCKTCDYAAADSS 50
Query: 82 GLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHI 116
LN+H + + P ++C CPY ++ L H+
Sbjct: 51 SLNKHLRIHSDERP-FKCQICPYASRNSSQLTVHL 84
>pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1210
Score = 32.0 bits (71), Expect = 0.12, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 67 MFACDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINV 118
+ CD+CG Y + ++ C ++ +Y PY AKL F +N+
Sbjct: 1149 VIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQELMSMNI 1200
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ C+ CGK + QK LNRH++ G++P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ C+ CGK + QK LNRH++ G++P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINVKHSYE 123
+ CD C ++ K L HK G++P Y+C C + NLKTH + HS E
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRI-HSGE 71
Score = 29.6 bits (65), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 20/76 (26%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
+ CD C ++ K L HK G++P + C++CG ++ +
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP--------------------YRCNICGAQFNR 57
Query: 80 KYGLNRHKKYDCGQEP 95
L H + G++P
Sbjct: 58 PANLKTHTRIHSGEKP 73
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.16, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
F CD C K ++Q+ LN H+ G++P
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.16, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
F CD C K ++Q+ LN H+ G++P
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ CDVCGKE+ Q L H++ G++P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ CDVCGKE+ Q L H++ G++P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 20/68 (29%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
F C +C + + + L H + G++P FACD+CG+++ +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP--------------------FACDICGRKFAR 43
Query: 80 KYGLNRHK 87
RH+
Sbjct: 44 SDERKRHR 51
>pdb|4EM8|A Chain A, The Structure Of Ribose 5-Phosphate Isomerase B From
Anaplasma Phagocytophilum
pdb|4EM8|B Chain B, The Structure Of Ribose 5-Phosphate Isomerase B From
Anaplasma Phagocytophilum
Length = 148
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 41 YDCGQEPKYHGEDFSSWPGE--KQNHAEMFACDVCGKEYKQKYGLNRHKK 88
+DCG +PK H D+ + + ++ F +CG NRHK
Sbjct: 37 FDCGCDPKEHSVDYPDYVHDVVREVSDTSFGVLICGTGIGMSIAANRHKN 86
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 20 FACDVCGKEYKQKYGLNRH 38
+ACD+CGK YK + GL+ H
Sbjct: 8 YACDICGKRYKNRPGLSYH 26
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 68 FACDVCGKEYKQKYGLNRH 86
+ACD+CGK YK + GL+ H
Sbjct: 8 YACDICGKRYKNRPGLSYH 26
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 29.6 bits (65), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 16/80 (20%)
Query: 7 SSWPGEKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAE 66
S G + +AC C K ++QK L+ H K +YH +F
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK-------RYHDPNFV---------PA 46
Query: 67 MFACDVCGKEYKQKYGLNRH 86
F C CGK + ++ + RH
Sbjct: 47 AFVCSKCGKTFTRRNTMARH 66
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
F C CGK + GLN+H++ G++P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
F C CGK + GLN+H++ G++P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
F CD+CGK + + LNRH ++P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
F CD+CGK + + LNRH ++P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 29.3 bits (64), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 21/83 (25%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
F C CG+ + + Y L H++ + P + CD+C K +++
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERP--------------------YTCDICHKAFRR 57
Query: 80 KYGLNRHKKYDCGQEPKYQCLYC 102
+ L H +Y +E ++C C
Sbjct: 58 QDHLRDH-RYIHSKEKPFKCQEC 79
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 29.3 bits (64), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 65 AEMFACDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINVKHSYE 123
AE C VCG+ + K RH + + + C YCP L HIN H E
Sbjct: 26 AECHLCPVCGESFASKGAQERHLRLLHAAQ-VFPCKYCPATFYSSPGLTRHINKCHPSE 83
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
F C CGK Y Q+ L +H++ G++P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
F C CGK Y Q+ L +H++ G++P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 28.9 bits (63), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINVK 119
+ C+ CG K+ L +H + P Y C YC + K + NL H+ K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKSK 52
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 28.9 bits (63), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 68 FACDV--CGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHI 116
+AC V C + + + L RH + GQ+P +QC C +L THI
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ C+ CGK Y K+ L+ H+K G+ P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ C+ CGK Y K+ L+ H+K G+ P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
F C CGK + +K L+ H+K G++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
F C CGK + +K L+ H+K G++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ C VCGK + + L +H+K G++P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ C VCGK + + L +H+K G++P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 78
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 17/66 (25%)
Query: 22 CDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQKY 81
C++CG +QK LN H+ + H E + A F C+ CGK +++
Sbjct: 10 CEICGFTCRQKASLNWHQ--------RKHAETVA---------ALRFPCEFCGKRFEKPD 52
Query: 82 GLNRHK 87
+ H+
Sbjct: 53 SVAAHR 58
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ C+ CGK + QK L+ H++ G++P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ C+ CGK + QK L+ H++ G++P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ C+ CGK + Q L RH++ G++P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ C+ CGK + Q L RH++ G++P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
F C+ CGK + Q L+ H++ G++P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
F C+ CGK + Q L+ H++ G++P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
F C+ CGK + Q L+ H++ G++P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
F C+ CGK + Q L+ H++ G++P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ C+ CGK + Q L RH++ G++P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ C+ CGK + Q L RH++ G++P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 25/104 (24%)
Query: 22 CDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDV--CGKEYKQ 79
C GK +K KY L H + G++P F C CGK + +
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKP--------------------FPCPFPGCGKIFAR 104
Query: 80 KYGLNRHKKYDCGQEPKYQCLY--CPYRAKLRFNLKTHINVKHS 121
L HK+ G++P ++C + C R + K H++V S
Sbjct: 105 SENLKIHKRTHTGEKP-FKCEFEGCDRRFANSSDRKKHMHVHTS 147
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
C+ CGK ++Q L++H++ G++P
Sbjct: 11 LVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
C+ CGK ++Q L++H++ G++P
Sbjct: 11 LVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ C VC K + QK L +H+K G++P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ C VC K + QK L +H+K G++P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
F C CGK + ++ LN H K G++P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
F C CGK + ++ LN H K G++P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLYC 102
+ C CGK + + L +H++ G++P Y+CL C
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLEC 48
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 20/69 (28%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
+ C CGK + + L +H++ G++P + C CGK + Q
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP--------------------YKCLECGKAFSQ 54
Query: 80 KYGLNRHKK 88
GL H++
Sbjct: 55 NSGLINHQR 63
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ C CGK + QK L +H++ G++P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ C CGK + QK L +H++ G++P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ C VCGK + + L+ H++ G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ C VCGK + + L+ H++ G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ C +CGK + +K L+ H++ G++P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ C +CGK + +K L+ H++ G++P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ CD CGK + L RH++ G++P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ CD CGK + L RH++ G++P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ CDVC K + L +H++ G++P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ CDVC K + L +H++ G++P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|4G9I|A Chain A, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|B Chain B, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|C Chain C, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|D Chain D, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|E Chain E, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|F Chain F, Crystal Structure Of T.Kodakarensis Hypf
Length = 772
Score = 26.2 bits (56), Expect = 6.3, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 10 PGEKQNHAEMFACDVCGKEYK 30
P ++ HAE AC VCG Y+
Sbjct: 169 PLNRRYHAEPTACPVCGPSYR 189
Score = 26.2 bits (56), Expect = 6.3, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 58 PGEKQNHAEMFACDVCGKEYK 78
P ++ HAE AC VCG Y+
Sbjct: 169 PLNRRYHAEPTACPVCGPSYR 189
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 97 YQCLYCPYRAKLRFNLKTHINVKHSYE 123
++C C Y + + NLK H+N +HS E
Sbjct: 10 FKCSLCEYATRSKSNLKAHMN-RHSTE 35
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ C CGK + +KY L H++ G++P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ C CGK + +KY L H++ G++P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 26.2 bits (56), Expect = 7.4, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 19 MFACDVCGKEYKQKYGLNRHKKYDCGQEP 47
++ C CGK ++QK L H++ G P
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 26.2 bits (56), Expect = 7.4, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 67 MFACDVCGKEYKQKYGLNRHKKYDCGQEP 95
++ C CGK ++QK L H++ G P
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ C+ CGK + Q L RH++ G +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ C+ CGK + Q L RH++ G +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin
Length = 424
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 60 EKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINVK 119
+K + MF D CG++YK + + RHK PK + + +LKT+ K
Sbjct: 138 DKTPYTIMFGPDKCGEDYKLHF-IFRHKN------PKTGVYEEKHAKRPDADLKTYFTDK 190
Query: 120 HSYEYIRII 128
++ Y I+
Sbjct: 191 KTHLYTLIL 199
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 25.8 bits (55), Expect = 8.6, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 11 GEKQNHAEMFACDVCGKEYKQKYGLNRHK 39
G + + CD+CGK++K K L HK
Sbjct: 1 GSSGSSGKTHLCDMCGKKFKSKGTLKSHK 29
Score = 25.8 bits (55), Expect = 8.6, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 59 GEKQNHAEMFACDVCGKEYKQKYGLNRHK 87
G + + CD+CGK++K K L HK
Sbjct: 1 GSSGSSGKTHLCDMCGKKFKSKGTLKSHK 29
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ C+ CGK + Q L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ C+ CGK + Q L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ C+ CGK + Q L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ C+ CGK + Q L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ C+ CGK ++ L+RH++ G++P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ C+ CGK ++ L+RH++ G++P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
F C CGK ++Q L H + G++P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
F C CGK ++Q L H + G++P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,757,523
Number of Sequences: 62578
Number of extensions: 199897
Number of successful extensions: 758
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 494
Number of HSP's gapped (non-prelim): 249
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)