RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12022
(143 letters)
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 37.4 bits (86), Expect = 0.001
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 20 FACDV--CGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEY 77
+ C V C K+YK + GL H + Q K H + + C+VC K Y
Sbjct: 350 YKCPVEGCNKKYKNQNGLKYHMLHG-HQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRY 408
Query: 78 KQKYGLNRHKKY 89
K GL H+K+
Sbjct: 409 KNLNGLKYHRKH 420
>gnl|CDD|215056 PLN00104, PLN00104, MYST -like histone acetyltransferase;
Provisional.
Length = 450
Score = 27.8 bits (62), Expect = 1.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 6 FSSWPGEKQNHAEMFACDVCGKEYKQKYGLNRHKK 40
FS +P E + ++++ C+ C K K+K L RH K
Sbjct: 185 FSPFPPEYNDCSKLYFCEFCLKFMKRKEQLQRHMK 219
Score = 27.8 bits (62), Expect = 1.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 54 FSSWPGEKQNHAEMFACDVCGKEYKQKYGLNRHKK 88
FS +P E + ++++ C+ C K K+K L RH K
Sbjct: 185 FSPFPPEYNDCSKLYFCEFCLKFMKRKEQLQRHMK 219
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys.
The C2H2 zinc finger is composed of two short beta
strands followed by an alpha helix. The amino terminal
part of the helix binds the major groove in DNA binding
zinc fingers. The accepted consensus binding sequence
for Sp1 is usually defined by the asymmetric
hexanucleotide core GGGCGG but this sequence does not
include, among others, the GAG (=CTC) repeat that
constitutes a high-affinity site for Sp1 binding to the
wt1 promoter.
Length = 22
Score = 25.4 bits (56), Expect = 2.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 22 CDVCGKEYKQKYGLNRHKK 40
C CGK + +K L RH +
Sbjct: 2 CPDCGKSFSRKSNLKRHLR 20
Score = 25.4 bits (56), Expect = 2.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 70 CDVCGKEYKQKYGLNRHKK 88
C CGK + +K L RH +
Sbjct: 2 CPDCGKSFSRKSNLKRHLR 20
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 25.1 bits (55), Expect = 2.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 20 FACDVCGKEYKQKYGLNRHKK 40
+ C CGK +K K L H +
Sbjct: 1 YRCPECGKVFKSKSALREHMR 21
Score = 25.1 bits (55), Expect = 2.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 68 FACDVCGKEYKQKYGLNRHKK 88
+ C CGK +K K L H +
Sbjct: 1 YRCPECGKVFKSKSALREHMR 21
>gnl|CDD|227360 COG5027, SAS2, Histone acetyltransferase (MYST family) [Chromatin
structure and dynamics].
Length = 395
Score = 26.3 bits (58), Expect = 8.0
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 27 KEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQKYGLNRH 86
E + +N K + EP Y FS +P E + ++ C+ C K Y + L RH
Sbjct: 122 HEGARVKNINEIKLGNYEIEPWY----FSPYPEEFSDLDIVYICEFCLKYYGSQTSLVRH 177
Query: 87 KK 88
+K
Sbjct: 178 RK 179
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family
contains a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 23.8 bits (51), Expect = 8.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 20 FACDVCGKEYKQKYGLNRHKK 40
F C +CGK + K L RH +
Sbjct: 1 FKCPLCGKSFSSKDALKRHLR 21
Score = 23.8 bits (51), Expect = 8.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 68 FACDVCGKEYKQKYGLNRHKK 88
F C +CGK + K L RH +
Sbjct: 1 FKCPLCGKSFSSKDALKRHLR 21
>gnl|CDD|236613 PRK09693, PRK09693, Cascade antiviral complex protein; Validated.
Length = 489
Score = 25.9 bits (57), Expect = 9.1
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 21 ACDVCGKEYKQKY-GLNRHK 39
C CG+E +Q+Y G + K
Sbjct: 249 KCSCCGQESEQRYTGFLKEK 268
Score = 25.9 bits (57), Expect = 9.1
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 69 ACDVCGKEYKQKY-GLNRHK 87
C CG+E +Q+Y G + K
Sbjct: 249 KCSCCGQESEQRYTGFLKEK 268
>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies). This
family contains two copies of a C2H2-like zinc finger
domain.
Length = 100
Score = 24.9 bits (55), Expect = 9.3
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 98 QCLYCPYRAKLRFNLKTHINVKHS 121
CL+C + + H+ H
Sbjct: 1 DCLFCNHTSDTVEENLEHMFKSHG 24
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.449
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,901,410
Number of extensions: 561096
Number of successful extensions: 593
Number of sequences better than 10.0: 1
Number of HSP's gapped: 586
Number of HSP's successfully gapped: 45
Length of query: 143
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 56
Effective length of database: 7,078,804
Effective search space: 396413024
Effective search space used: 396413024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)