RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12022
(143 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 46.2 bits (110), Expect = 5e-08
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 17/69 (24%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
C++CG +QK LN H++ H + + F C+ CGK +++
Sbjct: 8 LQCEICGFTCRQKASLNWHQRK--------H----AETVAALR-----FPCEFCGKRFEK 50
Query: 80 KYGLNRHKK 88
+ H+
Sbjct: 51 PDSVAAHRS 59
Score = 41.2 bits (97), Expect = 4e-06
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 68 FACDVCGKEYKQKYGLNRHKK---YDCGQEPKYQCLYCPYRAKLRFNLKTHINVKHSYE 123
C++CG +QK LN H++ + C +C R + ++ H + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHPAL 65
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 40.2 bits (95), Expect = 1e-05
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 17/83 (20%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
+AC C K ++QK L+ H K +YH +F F C CGK + +
Sbjct: 16 YACSHCDKTFRQKQLLDMHFK-------RYHDPNFVPAA---------FVCSKCGKTFTR 59
Query: 80 KYGLNRHKKYDCGQEPKYQCLYC 102
+ + RH G + +
Sbjct: 60 RNTMARHADNCAGPDG-VEGENS 81
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 40.3 bits (95), Expect = 4e-05
Identities = 13/68 (19%), Positives = 18/68 (26%), Gaps = 11/68 (16%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
C + + + L H + P W C GK +K
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGP-EQNNHVCYWEE----------CPREGKSFKA 74
Query: 80 KYGLNRHK 87
KY L H
Sbjct: 75 KYKLVNHI 82
Score = 28.0 bits (63), Expect = 0.87
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 8/57 (14%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRA--------KLRFNLKTHI 116
C + + + L H + P+ C + K ++ L HI
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Score = 26.9 bits (60), Expect = 1.8
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 22/68 (32%)
Query: 22 CDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDV--CGKEYKQ 79
C GK +K KY L H + G++P F C CGK + +
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKP--------------------FPCPFPGCGKIFAR 104
Query: 80 KYGLNRHK 87
L HK
Sbjct: 105 SENLKIHK 112
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 39.4 bits (91), Expect = 5e-05
Identities = 15/94 (15%), Positives = 24/94 (25%), Gaps = 14/94 (14%)
Query: 7 SSWPGEKQNHAEM-FACDVCGKEYKQKYGLNRH------------KKYDCGQEPKYHGED 53
S F C C Y L H + + +
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 54 FSSWPGEKQNHAE-MFACDVCGKEYKQKYGLNRH 86
S E + A+ + C CG ++ L+ H
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 27.4 bits (60), Expect = 0.94
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 2 LPKDFSSWPGEKQNHAE-MFACDVCGKEYKQKYGLNRH 38
P+ S E + A+ + C CG ++ L+ H
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 38.6 bits (91), Expect = 6e-05
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 21/84 (25%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
AC++CGK ++ Y LNRHK G++P ++C VCG +K+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP--------------------YSCPVCGLRFKR 47
Query: 80 KYGLNRHKKYDCGQEPK-YQCLYC 102
K ++ H + G K Y C C
Sbjct: 48 KDRMSYHVRSHDGSVGKPYICQSC 71
Score = 33.2 bits (77), Expect = 0.006
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 18/69 (26%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
++C VCG +K+K ++ H + G K P + C CGK + +
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGK---------P---------YICQSCGKGFSR 77
Query: 80 KYGLNRHKK 88
LN H K
Sbjct: 78 PDHLNGHIK 86
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 38.3 bits (90), Expect = 6e-05
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPK-YQCLYCPYRAKLRFNLKTHINVKHSYE 123
+ C +C + Q + H + + C +C + +L H+ +HSY
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS 72
Score = 33.6 bits (78), Expect = 0.003
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 18/67 (26%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
+ C +C + Q + H + H E+ + F C C +
Sbjct: 16 YECYICHARFTQSGTMKMHIL-------QKHTENVAK-----------FHCPHCDTVIAR 57
Query: 80 KYGLNRH 86
K L H
Sbjct: 58 KSDLGVH 64
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 37.9 bits (89), Expect = 7e-05
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 18/69 (26%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
+ C VC + Y RH + K ++ C C KE+ +
Sbjct: 11 YRCKVCSRVYTHISNFCRH------YVTSHKR-------NVK-----VYPCPFCFKEFTR 52
Query: 80 KYGLNRHKK 88
K + H K
Sbjct: 53 KDNMTAHVK 61
Score = 28.3 bits (64), Expect = 0.26
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 11 GEKQNHAEMFACDVCGKEYKQKYGLNRHKK 40
K ++ C C KE+ +K + H K
Sbjct: 37 NVK-----VYPCPFCFKEFTRKDNMTAHVK 61
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 36.3 bits (85), Expect = 3e-04
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTH 115
C C K L H++ C P ++C YC + K NL H
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKH 56
Score = 34.8 bits (81), Expect = 0.001
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 20/69 (28%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
C C K L H++ C P F C+ C + KQ
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRP--------------------FKCNYCSFDTKQ 49
Query: 80 KYGLNRHKK 88
L++H K
Sbjct: 50 PSNLSKHMK 58
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.001
Identities = 26/136 (19%), Positives = 39/136 (28%), Gaps = 35/136 (25%)
Query: 31 QKYGLNRHKKYDCGQEPK------------YH------GEDFS---------SWPGEKQN 63
Y N K +D +H E + + +K
Sbjct: 451 DHY--NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 64 HAEMFACDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINVKHSYE 123
H A + G L +K Y C +PKY+ L L F L +
Sbjct: 509 HDST-AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI---LDF-LPKIEENLICSK 563
Query: 124 YIRIILRTAIMPSVSS 139
Y +LR A+M +
Sbjct: 564 YTD-LLRIALMAEDEA 578
Score = 27.5 bits (60), Expect = 1.7
Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 10/69 (14%)
Query: 1 MLPK---DFSSWPGEKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEPKYHG-----E 52
+ DF + +K H A + G L +K Y C +PKY
Sbjct: 492 LFRMVFLDFR-FLEQKIRHDST-AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 53 DFSSWPGEK 61
DF E
Sbjct: 550 DFLPKIEEN 558
Score = 25.6 bits (55), Expect = 8.7
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 14/73 (19%)
Query: 57 WPGEKQNHAEMFACDVCGKEYKQKYGL-NRHKKYDCGQEPKYQC--LYCPYRAKLRFNLK 113
W ++ + + KY L + K E +Y + KL
Sbjct: 396 WFDVIKSDVMVVVNKLH------KYSLVEKQPK-----ESTISIPSIYLELKVKLENEYA 444
Query: 114 THINVKHSYEYIR 126
H ++ Y +
Sbjct: 445 LHRSIVDHYNIPK 457
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 34.3 bits (80), Expect = 0.002
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 21/94 (22%)
Query: 22 CDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQKY 81
C+VCGK + +K L H + G +P + C C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKP--------------------YKCKTCDYAAADSS 50
Query: 82 GLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTH 115
LN+H + + P ++C CPY ++ L H
Sbjct: 51 SLNKHLRIHSDERP-FKCQICPYASRNSSQLTVH 83
Score = 30.9 bits (71), Expect = 0.044
Identities = 12/78 (15%), Positives = 18/78 (23%), Gaps = 27/78 (34%)
Query: 22 CDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQKY 81
C C LN+H + + P F C +C +
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERP--------------------FKCQICPYASRNSS 78
Query: 82 GLNRHKK-------YDCG 92
L H + G
Sbjct: 79 QLTVHLRSHTGDSGPSSG 96
Score = 24.3 bits (54), Expect = 8.2
Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 7/32 (21%)
Query: 20 FACDVCGKEYKQKYGLNRHKK-------YDCG 44
F C +C + L H + G
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDSGPSSG 96
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 34.8 bits (81), Expect = 0.002
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
F C CGK Y +K L H+ +C + E+ F C VC + +++
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNC-----MN-------RSEQV-----FTCSVCQETFRR 78
Query: 80 KYGLNRHKKYDCGQEPKYQCLYC 102
+ L H G+ P Y+C C
Sbjct: 79 RMELRLHMVSHTGEMP-YKCSSC 100
Score = 34.8 bits (81), Expect = 0.003
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 24/86 (27%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
C C K++ KY L H + G++P F C CGK Y +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKP--------------------FECPKCGKCYFR 47
Query: 80 KYGLNRHKKYDC---GQEPKYQCLYC 102
K L H+ +C ++ + C C
Sbjct: 48 KENLLEHEARNCMNRSEQV-FTCSVC 72
Score = 29.8 bits (68), Expect = 0.14
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 20/69 (28%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
F C VC + ++++ L H G+ P + C C +++ Q
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMP--------------------YKCSSCSQQFMQ 106
Query: 80 KYGLNRHKK 88
K L H
Sbjct: 107 KKDLQSHMI 115
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 32.8 bits (76), Expect = 0.006
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 21/83 (25%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
F C +CGK +K+ L+ H P + C CGK + Q
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP--------------------YPCQYCGKRFHQ 41
Query: 80 KYGLNRHKKYDCGQEPKYQCLYC 102
K + +H G++P ++C C
Sbjct: 42 KSDMKKHTFIHTGEKP-HKCQVC 63
Score = 30.1 bits (69), Expect = 0.068
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 20/69 (28%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
+ C CGK + QK + +H G++P C VCGK + Q
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKP--------------------HKCQVCGKAFSQ 69
Query: 80 KYGLNRHKK 88
L H +
Sbjct: 70 SSNLITHSR 78
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 33.2 bits (77), Expect = 0.007
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 21/83 (25%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
F C CG+ + + Y L H++ + P + CD+C K +++
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERP--------------------YTCDICHKAFRR 57
Query: 80 KYGLNRHKKYDCGQEPKYQCLYC 102
+ L H+ ++P ++C C
Sbjct: 58 QDHLRDHRYIHSKEKP-FKCQEC 79
Score = 31.3 bits (72), Expect = 0.034
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 21/80 (26%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
+ CD+C K ++++ L H+ ++P F C CGK + Q
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKP--------------------FKCQECGKGFCQ 85
Query: 80 KYGLNRHKKYDCGQEPKYQC 99
L HK
Sbjct: 86 SRTLAVHKTLHMQTSS-PTA 104
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 33.3 bits (75), Expect = 0.008
Identities = 15/112 (13%), Positives = 28/112 (25%), Gaps = 24/112 (21%)
Query: 10 PGEKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFA 69
+ E++ C +C + H++
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERL----------------------CRNAAV 44
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINVKHS 121
C C + H+ + K CL C K F++ H H+
Sbjct: 45 CPYCSLRFFSPELKQEHESKC--EYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 25.6 bits (55), Expect = 3.8
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSS 56
C C + +K + + RH+ Q SS
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSS 106
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 31.8 bits (72), Expect = 0.009
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLYC 102
AC++CGK ++ Y LNRHK G++P Y
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPS 46
Score = 29.9 bits (67), Expect = 0.040
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
AC++CGK ++ Y LNRHK G++P
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKP 40
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 32.4 bits (75), Expect = 0.009
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 20/69 (28%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
F C +C + + + L H + G++P FACD+CG+++ +
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKP--------------------FACDICGRKFAR 74
Query: 80 KYGLNRHKK 88
RH K
Sbjct: 75 SDERKRHTK 83
Score = 30.1 bits (69), Expect = 0.065
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 23/85 (27%)
Query: 20 FACDV--CGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEY 77
+AC V C + + Q L RH + GQ+P F C +C + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKP--------------------FQCRICMRNF 44
Query: 78 KQKYGLNRHKKYDCGQEPKYQCLYC 102
+ L H + G++P + C C
Sbjct: 45 SRSDHLTTHIRTHTGEKP-FACDIC 68
Score = 26.3 bits (59), Expect = 2.0
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 11 GEKQNHAEMFACDVCGKEYKQKYGLNRHKK 40
GEK FACD+CG+++ + RH K
Sbjct: 59 GEKP-----FACDICGRKFARSDERKRHTK 83
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 31.3 bits (70), Expect = 0.011
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 97 YQCLYCPYRAKLRFNLKTHINVKHSYE 123
YQC YC +R+ NLKTHI KHS E
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHSKE 29
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 33.0 bits (74), Expect = 0.013
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINVKHS 121
F C +C + L +H +Y E C C + H+ KH+
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRY---TEHTKVCPVCKKEFTSTDSALDHVCKKHN 125
Score = 26.8 bits (58), Expect = 1.7
Identities = 12/67 (17%), Positives = 17/67 (25%), Gaps = 22/67 (32%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
F C +C + L +H +Y C VC KE+
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRY----------------------TEHTKVCPVCKKEFTS 112
Query: 80 KYGLNRH 86
H
Sbjct: 113 TDSALDH 119
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 31.6 bits (71), Expect = 0.014
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHI 116
C+ CG K+ L +H + P Y C YC + K + NL H+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHM 49
Score = 28.1 bits (62), Expect = 0.22
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 20/71 (28%)
Query: 22 CDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQKY 81
C+ CG K+ L +H + P + C C +K K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRP--------------------YHCTYCNFSFKTKG 43
Query: 82 GLNRHKKYDCG 92
L +H K
Sbjct: 44 NLTKHMKSKAH 54
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 31.4 bits (72), Expect = 0.019
Identities = 24/96 (25%), Positives = 31/96 (32%), Gaps = 29/96 (30%)
Query: 11 GEKQNHAEMFACDV--CGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMF 68
G CD CG+ + + LN HKKY H +K F
Sbjct: 4 GSSG-----MPCDFPGCGRIFSNRQYLNHHKKYQ-------H-------IHQKS-----F 39
Query: 69 ACD--VCGKEYKQKYGLNRHKKYDCGQEPKYQCLYC 102
+C CGK + K L H K Y C +
Sbjct: 40 SCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEFS 74
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 32.0 bits (74), Expect = 0.022
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 21/78 (26%)
Query: 25 CGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQKYGLN 84
CGK + K +RH G P + C VCGK++K K+ L
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRP--------------------YGCGVCGKKFKMKHHLV 54
Query: 85 RHKKYDCGQEPKYQCLYC 102
H K G +P Y+C C
Sbjct: 55 GHMKIHTGIKP-YECNIC 71
Score = 30.9 bits (71), Expect = 0.060
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 25/79 (31%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
+ C VCGK++K K+ L H K G +P + C++C K +
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKP--------------------YECNICAKRFMW 77
Query: 80 KYGLNRH-----KKYDCGQ 93
+ +RH K Y+ +
Sbjct: 78 RDSFHRHVTSCTKSYEAAK 96
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 31.3 bits (72), Expect = 0.029
Identities = 15/79 (18%), Positives = 23/79 (29%), Gaps = 26/79 (32%)
Query: 11 GEKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFAC 70
GEK FACD+CG+++ + RH+ P
Sbjct: 28 GEKP-----FACDICGRKFARSDERKRHR--------DIQHIL----P---------ILE 61
Query: 71 DVCGKEYKQKYGLNRHKKY 89
D + + Y L
Sbjct: 62 DKVEELLSKNYHLENEVAR 80
Score = 30.5 bits (70), Expect = 0.042
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 26/80 (32%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
F C +C + + + L H + H GEK FACD+CG+++ +
Sbjct: 4 FQCRICMRNFSRSDHLTTHI--------RTH-------TGEKP-----FACDICGRKFAR 43
Query: 80 KYGLNRH------KKYDCGQ 93
RH +
Sbjct: 44 SDERKRHRDIQHILPILEDK 63
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 32.0 bits (74), Expect = 0.037
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 27/100 (27%)
Query: 20 FACDVCGKEYKQKYGLNRH-------KKYDCGQEPKYHGEDFSSWP----------GEKQ 62
+ C CGK + K L RH K Y C + G+ FS GEK
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPE----CGKSFSQRANLRAHQRTHTGEKP 105
Query: 63 NHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLYC 102
+AC CGK + Q L H++ G++P Y+C C
Sbjct: 106 -----YACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPEC 139
Score = 31.6 bits (73), Expect = 0.050
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 21/83 (25%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
+AC CGK + + L H++ G++P + C CGK +
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKP--------------------YKCPECGKSFSD 61
Query: 80 KYGLNRHKKYDCGQEPKYQCLYC 102
K L RH++ G++P Y+C C
Sbjct: 62 KKDLTRHQRTHTGEKP-YKCPEC 83
Score = 30.5 bits (70), Expect = 0.13
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 21/83 (25%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
+AC CGK + Q L H++ G++P + C CGK + +
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKP--------------------YKCPECGKSFSR 145
Query: 80 KYGLNRHKKYDCGQEPKYQCLYC 102
+ L+ H++ G++P Y+C C
Sbjct: 146 EDNLHTHQRTHTGEKP-YKCPEC 167
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 30.5 bits (70), Expect = 0.038
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 20/67 (29%)
Query: 22 CDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQKY 81
CD C ++ K L HK G++P + C++CG ++ +
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKP--------------------YRCNICGAQFNRPA 59
Query: 82 GLNRHKK 88
L H +
Sbjct: 60 NLKTHTR 66
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 30.1 bits (69), Expect = 0.048
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 20/69 (28%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
F C+VC + + ++ L RH + ++P + C +C + + +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP--------------------YPCGLCNRAFTR 42
Query: 80 KYGLNRHKK 88
+ L RH +
Sbjct: 43 RDLLIRHAQ 51
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 30.6 bits (70), Expect = 0.079
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 26/100 (26%)
Query: 20 FACDV--CGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEY 77
AC C K ++ + +H HG C CGK +
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHL--------HTHGPR----V---------HVCAECGKAF 44
Query: 78 KQKYGLNRHKKYDCGQEPKYQCLY--CPYRAKLRFNLKTH 115
+ L RH+ G++P +QC + C R L FNL+TH
Sbjct: 45 VESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTH 83
Score = 25.6 bits (57), Expect = 5.0
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 23/84 (27%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDV--CGKEY 77
C CGK + + L RH+ G++P F C CGK +
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKP--------------------FQCTFEGCGKRF 74
Query: 78 KQKYGLNRHKKYDCGQEPKYQCLY 101
+ L H + G P Y C +
Sbjct: 75 SLDFNLRTHVRIHTGDRP-YVCPF 97
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 29.0 bits (64), Expect = 0.084
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWP 58
+ACD+CGK YK + GL+ H + E + ++ S P
Sbjct: 8 YACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKEDSQPP 46
Score = 27.8 bits (61), Expect = 0.25
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ACD+CGK YK + GL+ H + E
Sbjct: 8 YACDICGKRYKNRPGLSYHYAHSHLAEE 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.15
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
F CD+CGK + + LNRH ++P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP-SGP 43
Score = 26.3 bits (59), Expect = 0.87
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
F CD+CGK + + LNRH ++P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 29.4 bits (65), Expect = 0.17
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 68 FACDVCGKEYKQKYGLNRH---KKYDCGQEPKYQCLYCPYRAKLRFNLKTHINVKHSYE 123
+ C C + H + + Y C+ C + K L H H E
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGE 77
Score = 29.4 bits (65), Expect = 0.19
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 84 NRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINVKHS 121
+ H + + E Y+C YC ++ H++ +H
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.22
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
CDVCGKE+ Q L H++ G++P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP-SGP 43
Score = 25.2 bits (56), Expect = 2.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 22 CDVCGKEYKQKYGLNRHKKYDCGQEP 47
CDVCGKE+ Q L H++ G++P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP 40
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 29.1 bits (64), Expect = 0.23
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 14 QNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEPK 48
Q + C C K++K K GLN H + +P
Sbjct: 49 QKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS 83
Score = 29.1 bits (64), Expect = 0.23
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 62 QNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEPK 96
Q + C C K++K K GLN H + +P
Sbjct: 49 QKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS 83
Score = 25.3 bits (54), Expect = 5.4
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 68 FACDVCGK-EYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINVKHS 121
C C K GL +H + + +C +C + K + L H +HS
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 28.6 bits (65), Expect = 0.24
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 25/77 (32%)
Query: 11 GEKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFAC 70
++ + CD CGK + L++H++ G++P + C
Sbjct: 15 ERRR-----YKCDECGKSFSHSSDLSKHRRTHTGEKP--------------------YKC 49
Query: 71 DVCGKEYKQKYGLNRHK 87
D CGK + Q+ L H
Sbjct: 50 DECGKAFIQRSHLIGHH 66
Score = 26.3 bits (59), Expect = 1.4
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 59 GEKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLYC 102
++ + CD CGK + L++H++ G++P Y+C C
Sbjct: 15 ERRR-----YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDEC 52
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 28.2 bits (64), Expect = 0.31
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 20/69 (28%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
+ C CGK + + L +H++ G++P + C CGK + Q
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP--------------------YKCLECGKAFSQ 54
Query: 80 KYGLNRHKK 88
GL H++
Sbjct: 55 NSGLINHQR 63
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.48
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C+ CGK Y K+ L+ H+K G+ P
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERP-SGP 43
Score = 24.0 bits (53), Expect = 4.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 22 CDVCGKEYKQKYGLNRHKKYDCGQEP 47
C+ CGK Y K+ L+ H+K G+ P
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERP 40
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.52
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C+ CGK Y ++ L+ H++ G++
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKT-SGP 43
Score = 25.1 bits (56), Expect = 2.4
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ C+ CGK Y ++ L+ H++ G++
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKT 40
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1
PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I
1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I*
1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Length = 122
Score = 28.3 bits (62), Expect = 0.61
Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 3/94 (3%)
Query: 12 EKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACD 71
+K+N+ +F C C Y ++ G +++ + C
Sbjct: 19 DKENNRLLFECRTCS--YVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECP 76
Query: 72 VCGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYR 105
C + + ++ ++ D + CL C +
Sbjct: 77 KCHSR-ENVFFQSQQRRKDTSMVLFFVCLSCSHI 109
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.67
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
++C+VCGK + LN+H + +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETL-SGP 43
Score = 24.4 bits (54), Expect = 4.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 20 FACDVCGKEYKQKYGLNRHKK 40
++C+VCGK + LN+H +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLR 33
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 27.9 bits (63), Expect = 0.78
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 12/66 (18%)
Query: 22 CDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQKY 81
D C +E+ + L H + HG K+ C + +K +Y
Sbjct: 6 WDGCSQEFDSQEQLVHHINSE-----HIHG-------ERKEFVCHWGGCSRELRPFKAQY 53
Query: 82 GLNRHK 87
L H
Sbjct: 54 MLVVHM 59
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.4 bits (59), Expect = 0.80
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C CGK + Y L +H ++P
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKP-SGP 43
Score = 24.4 bits (54), Expect = 4.0
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 22 CDVCGKEYKQKYGLNRHKKYDCGQEP 47
C CGK + Y L +H ++P
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKP 40
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.9 bits (56), Expect = 0.89
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 11 GEKQNHAEMFACDVCGKEYKQKYGLNRHK 39
G + + CD+CGK++K K L HK
Sbjct: 1 GSSGSSGKTHLCDMCGKKFKSKGTLKSHK 29
Score = 25.9 bits (56), Expect = 0.89
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 59 GEKQNHAEMFACDVCGKEYKQKYGLNRHK 87
G + + CD+CGK++K K L HK
Sbjct: 1 GSSGSSGKTHLCDMCGKKFKSKGTLKSHK 29
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 25.9 bits (58), Expect = 0.92
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 20 FACDVCGKEYKQKYGLNRH 38
+ C++CG ++ L H
Sbjct: 12 YPCEICGTRFRHLQTLKSH 30
Score = 25.9 bits (58), Expect = 0.92
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 68 FACDVCGKEYKQKYGLNRH 86
+ C++CG ++ L H
Sbjct: 12 YPCEICGTRFRHLQTLKSH 30
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 26.9 bits (59), Expect = 0.94
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 27/76 (35%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
C CG + ++ L+R K C+ C K+ Q
Sbjct: 19 QKCSKCGIIFIRRSTLSRRKTP---------------------------MCEKCRKDSCQ 51
Query: 80 KYGLNRHKKYDCGQEP 95
+ LN+ + + G++
Sbjct: 52 EAALNKDEGNESGKKT 67
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.7 bits (61), Expect = 1.0
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 9/33 (27%)
Query: 42 DCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCG 74
+C P E FS ++ C +CG
Sbjct: 26 ECKVYPPKIVERFS--------EGDVV-CALCG 49
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 26.0 bits (58), Expect = 1.0
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 59 GEKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
G+K F C CGK ++ K L H++ G++
Sbjct: 9 GQKP-----FECTHCGKSFRAKGNLVTHQRIHTGEKS-GPS 43
Score = 23.7 bits (52), Expect = 7.2
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 12/40 (30%)
Query: 11 GEKQNHAEMFACDVCGKEYKQKYGLNRH-------KKYDC 43
G+K F C CGK ++ K L H K
Sbjct: 9 GQKP-----FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 1.1
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C C K + Q LN+HK+ G+
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERS-SGP 43
Score = 24.0 bits (53), Expect = 4.6
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 22 CDVCGKEYKQKYGLNRHKKYDCGQEP 47
C C K + Q LN+HK+ G+
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERS 40
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 1.1
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
F C CGK + GLN+H++ G++P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP-SGP 43
Score = 23.6 bits (52), Expect = 7.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
F C CGK + GLN+H++ G++P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 26.9 bits (59), Expect = 1.1
Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 11/67 (16%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
C + + + L H + P+ W C GK +K
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQ-NNHVCYWEE----------CPREGKSFKA 74
Query: 80 KYGLNRH 86
KY L H
Sbjct: 75 KYKLVNH 81
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 1.1
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 11 GEKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQE 46
G + ++F C+ C K +K K+ L H + ++
Sbjct: 1 GSSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 25.6 bits (55), Expect = 1.1
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 59 GEKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQE 94
G + ++F C+ C K +K K+ L H + ++
Sbjct: 1 GSSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 26.0 bits (58), Expect = 1.2
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 19/56 (33%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGK 75
+ C CGK + + LN H K + H E+ C V
Sbjct: 13 YICQSCGKGFSRPDHLNGHIK-------QVH-------TSERP-----HKCQVWVS 49
Score = 26.0 bits (58), Expect = 1.3
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLYC 102
+ C CGK + + LN H K E ++C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 26.8 bits (60), Expect = 1.2
Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 25/106 (23%)
Query: 19 MFACDV--CGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDV--CG 74
M+ C CGK +K+ L H+ Q P + C C
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLP--------------------YECPHEGCD 40
Query: 75 KEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINVKH 120
K + L RH+K G + C + K H+ H
Sbjct: 41 KRFSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWTLYLKHVAECH 85
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.3
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C+ CGK + + L H K ++
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKS-SGP 43
Score = 24.0 bits (53), Expect = 5.8
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 20 FACDVCGKEYKQKYGLNRHKK 40
+ C+ CGK + + L H K
Sbjct: 13 YGCNECGKNFGRHSHLIEHLK 33
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 1.4
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 59 GEKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
GE F C CGK + K L H+K G+ P
Sbjct: 9 GENP-----FICSECGKVFTHKTNLIIHQKIHTGERP-SGP 43
Score = 23.2 bits (51), Expect = 9.7
Identities = 10/40 (25%), Positives = 12/40 (30%), Gaps = 12/40 (30%)
Query: 11 GEKQNHAEMFACDVCGKEYKQKYGLNRH-------KKYDC 43
GE F C CGK + K L H +
Sbjct: 9 GENP-----FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 1.5
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C CGK + +K GL+ H++ G+
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERH-SGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.6
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
F C+ CGK + ++ L H + ++
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKS-SGP 43
Score = 23.6 bits (52), Expect = 7.3
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 20 FACDVCGKEYKQKYGLNRHKK 40
F C+ CGK + ++ L H +
Sbjct: 13 FKCNECGKGFGRRSHLAGHLR 33
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 1.6
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C CGK + QK L +H++ G++P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP-SGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.7
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
CDVC K ++ L H++ G++P
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKP-SGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (57), Expect = 1.7
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C C + Q L H+ G++P
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKP-SGP 43
Score = 23.3 bits (51), Expect = 8.9
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 22 CDVCGKEYKQKYGLNRHKKYDCGQEP 47
C C + Q L H+ G++P
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKP 40
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 27.5 bits (60), Expect = 1.7
Identities = 7/42 (16%), Positives = 10/42 (23%), Gaps = 5/42 (11%)
Query: 3 PKDFSSWPGE-----KQNHAEMFACDVCGKEYKQKYGLNRHK 39
S P + + C VC L+ H
Sbjct: 159 SAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHV 200
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.8
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C+ CGK + QK LNRH++ G++P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP-SGP 43
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus
familiaris} SCOP: b.29.1.12 b.104.1.1
Length = 424
Score = 27.4 bits (60), Expect = 1.8
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 12/99 (12%)
Query: 26 GKEYKQKYGLNRHKKYDCG--------QEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEY 77
K +Y +N +CG + P+ + + F K + MF D CG++Y
Sbjct: 100 TKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHD----KTPYTIMFGPDKCGEDY 155
Query: 78 KQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHI 116
K + E K+ + KTH+
Sbjct: 156 KLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHL 194
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.8
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C VC K + QK L +H+K G++P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP-SGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.2 bits (56), Expect = 1.8
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
C CG+ + K LN+H++ G++P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 25.2 bits (56), Expect = 1.8
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
C CG+ + K LN+H++ G++P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.2 bits (56), Expect = 1.8
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C+ CGK + + L H G++P
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKP-SGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.9
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
F C CGK Y Q+ L +H++ G++P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP-SGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.2 bits (56), Expect = 2.0
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C CGK +K K L H++ G++P
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKP-SGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.0
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
F C+ CGK + Q L+ H++ G++P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP-SGP 43
Score = 23.3 bits (51), Expect = 9.0
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 20 FACDVCGKEYKQKYGLNRH-------KKYDCGQ 45
F C+ CGK + Q L+ H K
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.1
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C CGK + K L H+K G+
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERH-SGP 43
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 26.4 bits (57), Expect = 2.1
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 16 HAEMFACDVCGKEYKQKYGLNRHKKYDCGQEP 47
EMF C CGK+ + G+ H + P
Sbjct: 59 KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Score = 26.4 bits (57), Expect = 2.1
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 64 HAEMFACDVCGKEYKQKYGLNRHKKYDCGQEP 95
EMF C CGK+ + G+ H + P
Sbjct: 59 KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Score = 26.0 bits (56), Expect = 2.9
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 68 FACDVCGK-EYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTHINVKHS 121
+C C K GL +H + +C QE + C +C + + +K H+ H+
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHME-NCKQEM-FTCHHCGKQLRSLAGMKYHVMANHN 87
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.1 bits (56), Expect = 2.1
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C VCGK + + L +H+K G++P
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKP-SGP 43
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 25.2 bits (55), Expect = 2.1
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHG 51
F C C + + Q+ L +H++ + G
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSGPSSG 44
Score = 24.8 bits (54), Expect = 2.5
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 51 GEDFSSWPGEKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEP 95
G SS GE F C C + + Q+ L +H++ +
Sbjct: 1 GSSGSSGAGENP-----FKCSKCDRVFTQRNYLVQHERTHARKSG 40
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.2
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
F C+ C K + Q L H++ G++P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP-SGP 43
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 24.9 bits (55), Expect = 2.2
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 8 SWPGEKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEP 47
S GE + C CGK + Q+ L H++ P
Sbjct: 5 SSGGETP-----YLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
Score = 24.9 bits (55), Expect = 2.2
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 56 SWPGEKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEP 95
S GE + C CGK + Q+ L H++ P
Sbjct: 5 SSGGETP-----YLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.3
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
F C+ CGK + Q L+ H++ G++P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP-SGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.4
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C CGK + +KY L H++ G++P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP-SGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 24.8 bits (55), Expect = 2.4
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
F C CGK + ++ LN H K G++P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP-SGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.5
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C+ CGK + QK L+ H++ G++P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP-SGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 24.8 bits (55), Expect = 2.6
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C CGK + Q +H++ G++P
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKP-SGP 43
Score = 24.8 bits (55), Expect = 3.0
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
C CGK + Q +H++ G++P
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.6
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C+ CGK + Q L H++ G +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP-SGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 24.8 bits (55), Expect = 2.8
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C+ CGK + + L++H+K G++P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP-SGP 43
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 25.9 bits (58), Expect = 2.9
Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 25/92 (27%)
Query: 25 CGKEYKQKYGLNRH-------KKYDCGQEPKYHGEDFSSWP----------GEKQNHAEM 67
C K Y + L H K Y C + K FS G K
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQC--DFKDCERRFSRSDQLKRHQRRHTGVKP----- 66
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
F C C +++ + L H + G++P + C
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSC 97
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.9
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C+ CGK + Q L H + G++P
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKP-SGP 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 24.8 bits (55), Expect = 2.9
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
F C C K + K L H++ ++P
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKP-SGP 41
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.0
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C VCGK ++ L +H G+ P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERP-SGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 24.5 bits (54), Expect = 3.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEP 47
+ CD CGK + QK L H + G P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 24.5 bits (54), Expect = 3.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEP 95
+ CD CGK + QK L H + G P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.1
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C+ CGK + Q L RH++ G++P
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKP-SGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.1
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C+ CGK + Q L RH++ G +P
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKP-SGP 43
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 24.8 bits (54), Expect = 3.1
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 92 GQEPKYQCLY--CPYRAKLRFNLKTHI 116
+ ++CL+ C K R+N+++HI
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHI 40
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.1
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C+ CGK + Q L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP-SGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.2
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C VCGK + + L+ H++ G++P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKP-SGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.4
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C+ CGK + Q L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP-SGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.4
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
CDVC K + L +H++ G++P
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKP-SGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.5
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C CGK + + LN H++ G P
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRP-SGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.5
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
F C CGK ++Q L H + G++P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP-SGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.6
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C CGK + K L H + G++P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP-SGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.6
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C CGK + + L +H++ G++P
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP-SGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.7
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C CGK YK++ L+ H++ G++
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKL-SGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.8
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ CD CGK + L RH++ G++P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP-SGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.8
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C CGK + + L H+K G++P
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKP-SGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.9
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
F C C K + K L H++ G++P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP-SGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.0
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C+ CGK + L H++ G++P
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKP-SGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.0
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C CGK + K L H++ +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKH-SGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.1
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C +CGK + +K L+ H++ G++P
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKP-SGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.2
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
F C CGK + +K L+ H+K G++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP-SGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.2
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C+ CGK + Q L RH++ G++P
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKP-SGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.3
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C+ CGK + Q L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP-SGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.4
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C+ CGK ++ L H+ G++P
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKP-SGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.4
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C CGK + QK L+ H++ G++P
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKP-SGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 4.5
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C CGK +++ L RH+ G++P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP-SGP 43
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 25.2 bits (56), Expect = 4.6
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 23/85 (27%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDV--CGKEY 77
CGK Y + L H + G++P + CD CG ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKP--------------------YHCDWDGCGWKF 47
Query: 78 KQKYGLNRHKKYDCGQEPKYQCLYC 102
+ L RH + G P +QC C
Sbjct: 48 ARSDELTRHYRKHTGHRP-FQCQKC 71
Score = 24.4 bits (54), Expect = 8.3
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 22/71 (30%)
Query: 20 FACDV--CGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEY 77
+ CD CG ++ + L RH + G P F C C + +
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRP--------------------FQCQKCDRAF 75
Query: 78 KQKYGLNRHKK 88
+ L H K
Sbjct: 76 SRSDHLALHMK 86
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.6
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C+ CGK + L H+ G++P
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKP-SGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.9
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C CGK + +K L+ H++ G+ P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENP-SGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 24.1 bits (53), Expect = 5.1
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C CGK ++ L +H++ G++P
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKP-SGP 43
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 26.3 bits (58), Expect = 5.1
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 26/53 (49%)
Query: 22 CDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCG 74
C+ C +EY P +++ HA+ AC CG
Sbjct: 164 CEKCSREYHD--------------------------PHDRRFHAQPVACFDCG 190
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 5.2
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C CGK + + L +H+K Q+P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP-SGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.0 bits (53), Expect = 5.4
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C+ C K + K L H++ G+
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESG-PSS 43
Score = 24.0 bits (53), Expect = 5.8
Identities = 7/30 (23%), Positives = 9/30 (30%), Gaps = 7/30 (23%)
Query: 22 CDVCGKEYKQKYGLNRH-------KKYDCG 44
C+ C K + K L H G
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSSG 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 5.5
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C+ CGK ++ L+RH++ G++P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP-SGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 5.7
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C+ CGK + Q L +H++ G++P
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKP-SGP 43
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 25.6 bits (57), Expect = 6.0
Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 33/103 (32%)
Query: 20 FACD--VCGKEYKQKYGLNRHKK-------YDCGQEPKYHGEDFSSWP----------GE 60
F C C K + + L RH + C + F++
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGC--DLRFTTKANMKKHFNRFHNI 100
Query: 61 KQNHAEMFACDV--CGKEYKQKYGLNRHKK-------YDCGQE 94
K ++ C CGK +K+ L H+ Y+C E
Sbjct: 101 KI---CVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHE 140
Score = 25.6 bits (57), Expect = 6.4
Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 33/82 (40%)
Query: 25 CGKEYKQKYGLNRHKK-------YDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEY 77
CG Y + + L H + C +E C K +
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEG-------------------------CEKGF 54
Query: 78 KQKYGLNRHKKYDCGQEPKYQC 99
+ L RH G++ + C
Sbjct: 55 TSLHHLTRHSLTHTGEKN-FTC 75
Score = 24.9 bits (55), Expect = 9.1
Identities = 18/87 (20%), Positives = 25/87 (28%), Gaps = 34/87 (39%)
Query: 25 CGKEYKQKYGLNRHKK-------YDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEY 77
CGK +K+ L H+ Y+C E C K +
Sbjct: 112 CGKAFKKHNQLKVHQFSHTQQLPYECPHEG-------------------------CDKRF 146
Query: 78 KQKYGLNRHKKYDCGQEPK--YQCLYC 102
L RH+K G K C +
Sbjct: 147 SLPSRLKRHEKVHAGYPCKKDDSCSFV 173
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.7 bits (52), Expect = 6.4
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C CGK + +H++ GQ P
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRP-SGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.7 bits (52), Expect = 6.6
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C+ CGK ++ + L H+ G++P
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKP-SGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 23.6 bits (52), Expect = 6.9
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C CGK + Q L +H++ G++P
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP-SGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 23.7 bits (52), Expect = 6.9
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C C K + K L H++ ++P
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKP-SGP 43
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 23.2 bits (49), Expect = 8.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCG 44
++C VCGK + K+ + H + G
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 23.2 bits (49), Expect = 8.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCG 92
++C VCGK + K+ + H + G
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 24.5 bits (54), Expect = 8.4
Identities = 23/97 (23%), Positives = 29/97 (29%), Gaps = 18/97 (18%)
Query: 7 SSWPGEKQNHAEMFACDV--CGKEYKQKYGLNRH-------KKYDCGQEPKYHGEDFSSW 57
S G + CD C K Y + L H K Y C E F+
Sbjct: 3 SGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWE--GCDWRFAR- 59
Query: 58 PGEKQNHAEM------FACDVCGKEYKQKYGLNRHKK 88
E H F C VC + + + L H K
Sbjct: 60 SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 23.3 bits (51), Expect = 8.6
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
F C+ CGK + H++ G++P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP-SGP 43
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 23.4 bits (51), Expect = 9.3
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 20 FACDVCGKEYKQKYGLNRHKK 40
++C C + + L +H+K
Sbjct: 11 YSCAECKETFSDNNRLVQHQK 31
Score = 23.4 bits (51), Expect = 9.3
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 68 FACDVCGKEYKQKYGLNRHKK 88
++C C + + L +H+K
Sbjct: 11 YSCAECKETFSDNNRLVQHQK 31
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 23.3 bits (51), Expect = 9.4
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C C K + K L H++ G +P
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKP-SGP 43
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 23.3 bits (51), Expect = 9.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 20 FACDVCGKEYKQKYGLNRHKK 40
+ C+ CGK + + + L RH+K
Sbjct: 13 YNCNECGKAFTRIFHLTRHQK 33
Score = 23.3 bits (51), Expect = 9.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 68 FACDVCGKEYKQKYGLNRHKK 88
+ C+ CGK + + + L RH+K
Sbjct: 13 YNCNECGKAFTRIFHLTRHQK 33
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 23.2 bits (51), Expect = 9.8
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C CGK + +K L H+K GQ
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSG-PSS 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 10.0
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
C+ CGK + + L H+ G++P
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKP-SGP 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.449
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,158,757
Number of extensions: 110593
Number of successful extensions: 820
Number of sequences better than 10.0: 1
Number of HSP's gapped: 700
Number of HSP's successfully gapped: 349
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)