RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12022
(143 letters)
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 32.4 bits (73), Expect = 0.001
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 97 YQCLYCPYRAKLRFNLKTHINVKHSYE 123
YQC YC +R+ NLKTHI KHS E
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHSKE 29
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 30.0 bits (67), Expect = 0.010
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 21 ACDVCGKEYKQKYGLNRHKKYDCGQEP 47
AC++CGK ++ Y LNRHK G++P
Sbjct: 7 ACEICGKIFRDVYHLNRHKLSHSGEKP 33
Score = 30.0 bits (67), Expect = 0.010
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 69 ACDVCGKEYKQKYGLNRHKKYDCGQEP 95
AC++CGK ++ Y LNRHK G++P
Sbjct: 7 ACEICGKIFRDVYHLNRHKLSHSGEKP 33
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 28.5 bits (63), Expect = 0.050
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 21/69 (30%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDFSSWPGEKQNHAEMFACDVCGKEYKQ 79
+ C CGK + K +RH + C VCGK++K
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHL--------------------GLRPYGCGVCGKKFKM 42
Query: 80 KYGLNRHKK 88
K+ L H K
Sbjct: 43 KHHLVGHMK 51
Score = 28.5 bits (63), Expect = 0.061
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLYCPYRAKLRFNLKTH 115
+ C CGK + K +RH Y C C + K++ +L H
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGH 49
Score = 24.3 bits (52), Expect = 2.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 14 QNHAEMFACDVCGKEYKQKYGLNRHKK 40
+ C VCGK++K K+ L H K
Sbjct: 25 HLGLRPYGCGVCGKKFKMKHHLVGHMK 51
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.3 bits (61), Expect = 0.11
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 7/34 (20%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGED 53
+ C +C + Q + H + H E+
Sbjct: 9 YECYICHARFTQSGTMKMHIL-------QKHTEN 35
Score = 26.9 bits (60), Expect = 0.16
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 68 FACDVCGKEYKQKYGLNRHKK 88
+ C +C + Q + H
Sbjct: 9 YECYICHARFTQSGTMKMHIL 29
Score = 23.4 bits (51), Expect = 2.8
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 97 YQCLYCPYRAKLRFNLKTHINVKHSYE 123
Y+C C R +K HI KH+
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTEN 35
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 26.8 bits (60), Expect = 0.15
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 20 FACDVCGKEYKQKYGLNRHKK 40
+ C CGK + + L +H++
Sbjct: 8 YGCVECGKAFSRSSILVQHQR 28
Score = 26.8 bits (60), Expect = 0.15
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 68 FACDVCGKEYKQKYGLNRHKK 88
+ C CGK + + L +H++
Sbjct: 8 YGCVECGKAFSRSSILVQHQR 28
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.2 bits (58), Expect = 0.25
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 20 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYHGEDF 54
+AC C K ++QK L+ H K +YH +F
Sbjct: 9 YACSHCDKTFRQKQLLDMHFK-------RYHDPNF 36
Score = 25.8 bits (57), Expect = 0.39
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 68 FACDVCGKEYKQKYGLNRHKK 88
+AC C K ++QK L+ H K
Sbjct: 9 YACSHCDKTFRQKQLLDMHFK 29
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 26.1 bits (58), Expect = 0.29
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 68 FACDVCGKEYKQKYGLNRHKKYDCGQEPKYQC 99
+ C CGK + + LN H K E ++C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 25.3 bits (56), Expect = 0.53
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 20 FACDVCGKEYKQKYGLNRHKK 40
+ C CGK + + LN H K
Sbjct: 6 YICQSCGKGFSRPDHLNGHIK 26
Score = 23.4 bits (51), Expect = 2.9
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 97 YQCLYCPYRAKLRFNLKTHINVKHSYE 123
Y C C +L HI H+ E
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSE 32
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 25.7 bits (57), Expect = 0.42
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 20 FACDVCGKEYKQKYGLNRHKK 40
F C+VC + + ++ L RH +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR 23
Score = 25.7 bits (57), Expect = 0.42
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 68 FACDVCGKEYKQKYGLNRHKK 88
F C+VC + + ++ L RH +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR 23
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 25.3 bits (56), Expect = 0.51
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 20 FACDVCGKEYKQKYGLNRHKK 40
F C +C + + + L H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR 24
Score = 25.3 bits (56), Expect = 0.51
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 68 FACDVCGKEYKQKYGLNRHKK 88
F C +C + + + L H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR 24
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 25.0 bits (55), Expect = 0.70
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 20 FACDVCGKEYKQKYGLNRHKK 40
FAC C K + + L++H K
Sbjct: 3 FACPECPKRFMRSDHLSKHIK 23
Score = 25.0 bits (55), Expect = 0.70
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 68 FACDVCGKEYKQKYGLNRHKK 88
FAC C K + + L++H K
Sbjct: 3 FACPECPKRFMRSDHLSKHIK 23
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 24.8 bits (54), Expect = 0.86
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 20 FACDVCGKEYKQKYGLNRHKK 40
FACD+CG+++ + RH K
Sbjct: 4 FACDICGRKFARSDERKRHTK 24
Score = 24.8 bits (54), Expect = 0.86
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 68 FACDVCGKEYKQKYGLNRHKK 88
FACD+CG+++ + RH K
Sbjct: 4 FACDICGRKFARSDERKRHTK 24
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 24.7 bits (54), Expect = 0.90
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 20 FACDVCGKEYKQKYGLNRHKK 40
F C +C + K RH K
Sbjct: 8 FVCRICLSAFTTKANCARHLK 28
Score = 24.7 bits (54), Expect = 0.90
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 68 FACDVCGKEYKQKYGLNRHKK 88
F C +C + K RH K
Sbjct: 8 FVCRICLSAFTTKANCARHLK 28
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 24.1 bits (53), Expect = 1.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 20 FACDVCGKEYKQKYGLNRHKK 40
+ C CGK + Q GL H++
Sbjct: 3 YKCLECGKAFSQNSGLINHQR 23
Score = 24.1 bits (53), Expect = 1.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 68 FACDVCGKEYKQKYGLNRHKK 88
+ C CGK + Q GL H++
Sbjct: 3 YKCLECGKAFSQNSGLINHQR 23
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 24.3 bits (53), Expect = 1.4
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 20 FACDVCGKEYKQKYGLNRHKK 40
F C C + + + L H+K
Sbjct: 12 FQCPDCDRSFSRSDHLALHRK 32
Score = 24.3 bits (53), Expect = 1.4
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 68 FACDVCGKEYKQKYGLNRHKK 88
F C C + + + L H+K
Sbjct: 12 FQCPDCDRSFSRSDHLALHRK 32
>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 23.9 bits (51), Expect = 1.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 18 EMFACDVCGKEYKQKYGLNRHKKYDCGQEP 47
EMF C CGK+ + G+ H + P
Sbjct: 1 EMFTCHHCGKQLRSLAGMKYHVMANHNSLP 30
Score = 23.9 bits (51), Expect = 1.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 66 EMFACDVCGKEYKQKYGLNRHKKYDCGQEP 95
EMF C CGK+ + G+ H + P
Sbjct: 1 EMFTCHHCGKQLRSLAGMKYHVMANHNSLP 30
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 23.9 bits (52), Expect = 1.9
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 70 CDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLY 101
CGK + K L H K Y C +
Sbjct: 6 EPACGKSFNFKKHLKEHMKLHSDTRD-YICEF 36
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 25.2 bits (55), Expect = 3.1
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 54 FSSWPGEKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEPKYQCLY 101
FS +P E + ++ D + + K R++K + P +Y
Sbjct: 21 FSPYPIELTDEDFIYIDDFTLQYFGSKKQYERYRKKCTLRHPPGNEIY 68
Score = 24.0 bits (52), Expect = 7.1
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 6 FSSWPGEKQNHAEMFACDVCGKEYKQKYGLNRHKKYDCGQEPK 48
FS +P E + ++ D + + K R++K + P
Sbjct: 21 FSPYPIELTDEDFIYIDDFTLQYFGSKKQYERYRKKCTLRHPP 63
>d2ex0a1 c.87.1.9 (A:26-412)
Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteurella
multocida [TaxId: 747]}
Length = 387
Score = 25.2 bits (55), Expect = 3.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 109 RFNLKTHINVKHSYEYIRIILR 130
L H+N+ HS + IR IL
Sbjct: 76 NIELNIHLNIAHSVQLIRPILA 97
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 22.7 bits (48), Expect = 4.6
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 97 YQCLYCPYRAKLRFNLKTHINVKH 120
++C YC + K NL H+ H
Sbjct: 3 FKCNYCSFDTKQPSNLSKHMKKFH 26
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 21.9 bits (46), Expect = 9.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 96 KYQCLYCPYRAKLRFNLKTHINVKHSY 122
K+ C +C + +L H+ +HSY
Sbjct: 2 KFHCPHCDTVIARKSDLGVHLRKQHSY 28
>d2ghfa2 g.37.1.1 (A:9-44) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 22.0 bits (46), Expect = 9.6
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 93 QEPKYQCLYCPYRAKLRFNLKTHINVKH 120
E Y+C YC ++ H++ +H
Sbjct: 7 VEGGYECKYCTFQTPDLNMFTFHVDSEH 34
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.449
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 562,254
Number of extensions: 25699
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 91
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)