RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12023
         (55 letters)



>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
           transition [Transcription / Cell division and chromosome
           partitioning].
          Length = 423

 Score = 28.5 bits (63), Expect = 0.10
 Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 24/75 (32%)

Query: 2   FMCDV--CGKGYKYKNGIYRHKK-------------------FECGQEPKYQCPQCPYRA 40
           + C V  C K YK +NG+  H                     F    +P Y+C  C  R 
Sbjct: 350 YKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKP-YRCEVCDKRY 408

Query: 41  KQNAHLTTHMAIKHY 55
           K    L  H   KH 
Sbjct: 409 KNLNGLKYH--RKHS 421


>gnl|CDD|202726 pfam03691, UPF0167, Uncharacterized protein family (UPF0167).
          The proteins in this family are about 200 amino acids
          long and each contain 3 CXXC motifs.
          Length = 177

 Score = 28.1 bits (63), Expect = 0.13
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 8/35 (22%)

Query: 4  CDVCGK--GYKYKNGIYRHKKFECGQEPKYQCPQC 36
          CD CG+  GY Y    Y        ++ +Y CP C
Sbjct: 27 CDCCGQARGYVYTGPFY------TVEDVEYLCPWC 55


>gnl|CDD|215825 pfam00262, Calreticulin, Calreticulin family. 
          Length = 359

 Score = 25.7 bits (57), Expect = 1.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 1   MFMCDVCGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTT 48
           MF  D+CG   K  + I+RHK     +E K+   +   R  +  HL T
Sbjct: 113 MFGPDICGSDTKKVHFIFRHKPITGYKEEKHLIKKPISRCDKLTHLYT 160


>gnl|CDD|235840 PRK06599, PRK06599, DNA topoisomerase I; Validated.
          Length = 675

 Score = 25.2 bits (56), Expect = 1.4
 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 3/28 (10%)

Query: 4   CDVCGKGYKYKNGIYRHKKF-ECGQEPK 30
           C  CG     K G  R+ KF  C   P+
Sbjct: 640 CPKCGGPLVLKKG--RYGKFLACSGYPE 665


>gnl|CDD|235516 PRK05582, PRK05582, DNA topoisomerase I; Validated.
          Length = 650

 Score = 24.8 bits (55), Expect = 2.1
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 15/48 (31%)

Query: 2   FMCDVCGKGYKYKNGIYRHKKF-------ECG------QEPKYQCPQC 36
             C  CG     K G  R+ KF       +C       +E   +CP+C
Sbjct: 572 EDCPKCGSPMVIKMG--RYGKFIACSNFPDCRNTKPIVKEIGVKCPKC 617


>gnl|CDD|222450 pfam13909, zf-H2C2_5, C2H2-type zinc-finger domain. 
          Length = 24

 Score = 23.4 bits (51), Expect = 2.2
 Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)

Query: 31 YQCPQCPYRAKQNAHLTTHMAIKH 54
          Y+C  CPY +     L  H+ + H
Sbjct: 1  YKCSHCPYSSTP-KKLERHLKLHH 23


>gnl|CDD|235871 PRK06835, PRK06835, DNA replication protein DnaC; Validated.
          Length = 329

 Score = 24.1 bits (53), Expect = 3.8
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 28  EPKYQCPQC 36
           E KY CP+C
Sbjct: 96  EMKYTCPKC 104


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.139    0.491 

Gapped
Lambda     K      H
   0.267   0.0692    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,474,550
Number of extensions: 140058
Number of successful extensions: 251
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 23
Length of query: 55
Length of database: 10,937,602
Length adjustment: 27
Effective length of query: 28
Effective length of database: 9,740,044
Effective search space: 272721232
Effective search space used: 272721232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.3 bits)