RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12023
         (55 letters)



>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 27.6 bits (62), Expect = 0.011
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 31 YQCPQCPYRAKQNAHLTTHMAIKH 54
          Y+C  C  R  Q+  +  H+  KH
Sbjct: 9  YECYICHARFTQSGTMKMHILQKH 32


>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 39

 Score = 26.1 bits (58), Expect = 0.055
 Identities = 7/24 (29%), Positives = 9/24 (37%)

Query: 31 YQCPQCPYRAKQNAHLTTHMAIKH 54
          Y C  C     +  HL  H+   H
Sbjct: 6  YICQSCGKGFSRPDHLNGHIKQVH 29



 Score = 21.5 bits (46), Expect = 3.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 2  FMCDVCGKGYKYKNGIYRHKKFECGQEPKYQC 33
          ++C  CGKG+   + +  H K     E  ++C
Sbjct: 6  YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37


>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 25.8 bits (57), Expect = 0.071
 Identities = 8/27 (29%), Positives = 9/27 (33%)

Query: 28 EPKYQCPQCPYRAKQNAHLTTHMAIKH 54
          E  Y C  C    +Q   L  H    H
Sbjct: 6  EKPYACSHCDKTFRQKQLLDMHFKRYH 32



 Score = 21.2 bits (45), Expect = 5.3
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 2  FMCDVCGKGYKYKNGIYRHKK 22
          + C  C K ++ K  +  H K
Sbjct: 9  YACSHCDKTFRQKQLLDMHFK 29


>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 33

 Score = 25.3 bits (56), Expect = 0.097
 Identities = 5/22 (22%), Positives = 10/22 (45%)

Query: 31 YQCPQCPYRAKQNAHLTTHMAI 52
          Y C +C     +++ L  H  +
Sbjct: 8  YGCVECGKAFSRSSILVQHQRV 29



 Score = 22.2 bits (48), Expect = 1.7
 Identities = 5/21 (23%), Positives = 12/21 (57%)

Query: 2  FMCDVCGKGYKYKNGIYRHKK 22
          + C  CGK +   + + +H++
Sbjct: 8  YGCVECGKAFSRSSILVQHQR 28


>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 53

 Score = 25.8 bits (56), Expect = 0.099
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 7  CGKGYKYKNGIYRHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 52
          CGK + +K+   RH          Y C  C  + K   HL  HM I
Sbjct: 8  CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHMKI 52


>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
          Saccharomyces cerevisiae sequence}
          Length = 29

 Score = 24.9 bits (55), Expect = 0.13
 Identities = 5/22 (22%), Positives = 7/22 (31%)

Query: 31 YQCPQCPYRAKQNAHLTTHMAI 52
          + C  C     +  HL  H   
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRS 24



 Score = 21.0 bits (45), Expect = 4.4
 Identities = 6/21 (28%), Positives = 13/21 (61%)

Query: 2  FMCDVCGKGYKYKNGIYRHKK 22
          F+C+VC + +  +  + RH +
Sbjct: 3  FVCEVCTRAFARQEHLKRHYR 23


>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 29

 Score = 24.6 bits (54), Expect = 0.18
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 31 YQCPQCPYRAKQNAHLTTHMAI 52
          + CP+CP R  ++ HL+ H+  
Sbjct: 3  FACPECPKRFMRSDHLSKHIKT 24


>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 28

 Score = 24.5 bits (54), Expect = 0.18
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 31 YQCPQCPYRAKQNAHLTTHMAI 52
          +QC  C     ++ HLTTH+  
Sbjct: 4  FQCRICMRNFSRSDHLTTHIRT 25



 Score = 20.6 bits (44), Expect = 6.7
 Identities = 4/21 (19%), Positives = 10/21 (47%)

Query: 2  FMCDVCGKGYKYKNGIYRHKK 22
          F C +C + +   + +  H +
Sbjct: 4  FQCRICMRNFSRSDHLTTHIR 24


>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
          protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 38

 Score = 24.4 bits (53), Expect = 0.24
 Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 19 RHKKFECGQEPKYQCPQCPYRAKQNAHLTTHMAI 52
          R +  +  +   Y+C +C      ++ L+ H   
Sbjct: 2  RSEWQQRERRR-YKCDECGKSFSHSSDLSKHRRT 34


>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 29

 Score = 23.8 bits (51), Expect = 0.35
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 28 EPKYQCPQCPYRAKQNAHLTTHM 50
          E  ++C  CPY ++ ++ LT H+
Sbjct: 1  ERPFKCQICPYASRNSSQLTVHL 23


>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
          Length = 30

 Score = 24.0 bits (51), Expect = 0.35
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 31 YQCPQCPYRAKQNAHLTTHMAIKH 54
          YQC  C +R+  +++L TH+  KH
Sbjct: 3  YQCQYCEFRSADSSNLKTHIKTKH 26


>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 35

 Score = 22.8 bits (49), Expect = 1.2
 Identities = 4/25 (16%), Positives = 9/25 (36%)

Query: 28 EPKYQCPQCPYRAKQNAHLTTHMAI 52
          +  + C  C       A+   H+ +
Sbjct: 5  KRPFVCRICLSAFTTKANCARHLKV 29


>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 37

 Score = 22.4 bits (47), Expect = 1.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 2  FMCDVCGKGYKYKNGIYRH 20
          F+C  CGK +  +N + RH
Sbjct: 5  FVCSKCGKTFTRRNTMARH 23


>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 37

 Score = 22.0 bits (47), Expect = 2.2
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 31 YQCPQCPYRAKQNAHLTTHMAI 52
          +QCP C     ++ HL  H   
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKR 33


>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 75

 Score = 21.6 bits (45), Expect = 6.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 27 QEPKYQCPQCPYRAKQNAHLTTHM 50
          Q   YQC  C  + +  A LT+H+
Sbjct: 15 QNSTYQCKHCDSKLQSTAELTSHL 38


>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 29

 Score = 20.7 bits (43), Expect = 7.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 31 YQCPQCPYRAKQNAHLTTHMAIKH 54
          ++C  C +  KQ ++L+ HM   H
Sbjct: 3  FKCNYCSFDTKQPSNLSKHMKKFH 26


>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 35

 Score = 20.4 bits (42), Expect = 8.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 4  CDVCGKGYKYKNGIYRHKKFECGQEP 29
          C++CGK ++    + RHK    G++P
Sbjct: 8  CEICGKIFRDVYHLNRHKLSHSGEKP 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.139    0.491 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 218,671
Number of extensions: 7736
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 63
Length of query: 55
Length of database: 2,407,596
Length adjustment: 26
Effective length of query: 29
Effective length of database: 2,050,616
Effective search space: 59467864
Effective search space used: 59467864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)