BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12028
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
Y C CGK + K+ L RH++ G++P + CP+C Q+A L H Q
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAH----QRTHTGEK 104
Query: 62 MYACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
YAC CGK + L H++ G++P ++CP C R+D L H +
Sbjct: 105 PYACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTHQRT 155
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
Y C CGK + + L H++ G++P + CP+C Q A HL Q
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLA----HLRAHQRTHTGEK 132
Query: 62 MYACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
Y C CGK + + L H++ G++P ++CP C R+D L+ H +
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVHQRT 183
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
YAC CGK + L H++ G++P + CP+C K L RH Q
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRH----QRTHTGEK 76
Query: 62 MYACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHC 97
Y C CGK + + L H++ G++P + CP C
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRTHTGEKP-YACPEC 111
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 24 ECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHVMYACDVCGKVYQHKQTLDRHKK 83
E G++P + CP+C + + + HL Q Y C CGK + K+ L RH++
Sbjct: 16 EPGEKP-YACPEC----GKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR 70
Query: 84 DECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
G++P ++CP C ++ L H +
Sbjct: 71 THTGEKP-YKCPECGKSFSQRANLRAHQRT 99
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
YAC CGK + L H++ G++P + CP+C ++ L+ H Q
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTH----QRTHTGEK 160
Query: 62 MYACDVCGKVYQHKQTLDRHKKDECGQ 88
Y C CGK + + L+ H++ G+
Sbjct: 161 PYKCPECGKSFSRRDALNVHQRTHTGK 187
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 64 ACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMK 112
AC++CGK+++ L+RHK G++P + CP C R KRKD + H++
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVR 56
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 3 ACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHVM 62
AC++CGK ++ L RHK G++P + CP C R ++K ++ H+ G+
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHV--RSHDGSVGKP 65
Query: 63 YACDVCGKVYQHKQTLDRHKK 83
Y C CGK + L+ H K
Sbjct: 66 YICQSCGKGFSRPDHLNGHIK 86
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 28 EPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHVMYACDVCGKVYQHKQTLDRHKKDECG 87
E + CP+C Q + L +H Q Y C CGK + L +H++ G
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKH----QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTG 57
Query: 88 QEPKFECPHCPYRSKRKDTLDRHMKI 113
++P ++CP C R D L RH +
Sbjct: 58 EKP-YKCPECGKSFSRSDHLSRHQRT 82
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
Y C CGK + L +H++ G++P + CP+C Q + L +H Q
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKP-YKCPECGKSFSQSSDLQKH----QRTHTGEK 59
Query: 62 MYACDVCGKVYQHKQTLDRHKK 83
Y C CGK + L RH++
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQR 81
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 2 YACDV--CGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNA 59
YAC V C + + K L H + GQ+P F C C Q+A+LN H+
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQQASLNAHIRTH----TG 59
Query: 60 HVMYACDVCGKVYQHKQTLDRHKK 83
+ACD+CG+ + T RH K
Sbjct: 60 EKPFACDICGRKFATLHTRTRHTK 83
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 63 YACDV--CGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMK 112
YAC V C + + K LD H + GQ+P F+C C ++ +L+ H++
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQQASLNAHIR 55
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 2 YACDV--CGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNA 59
YAC V C + + K L H + GQ+P F C C Q LN+H+
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQHTGLNQHIRTH----TG 59
Query: 60 HVMYACDVCGKVYQHKQTLDRHKK 83
+ACD+CG+ + T DRH K
Sbjct: 60 EKPFACDICGRKFATLHTRDRHTK 83
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 28 EPKFGCP--QCPYRSRQKATLNRHLGWEQLQGNAHVMYACDVCGKVYQHKQTLDRHKKDE 85
E + CP C R QK L+ H+ Q + C +C + + L++H +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKP----FQCRICMRNFSQHTGLNQHIRTH 57
Query: 86 CGQEPKFECPHCPYRSKRKDTLDRHMKI 113
G++P F C C + T DRH KI
Sbjct: 58 TGEKP-FACDICGRKFATLHTRDRHTKI 84
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 4 CDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHVMY 63
C C K++ K L H + G++P F CP+C +K L H + + V +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 64 ACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKIIH 115
C VC + ++ + L H G+ P ++C C + +K L HM +H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQ--EPKFGCPQCPYRSRQKATLNRHLGWEQLQGNA 59
+ C CGK Y K L H+ C E F C C R++ L H+ +
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM----VSHTG 91
Query: 60 HVMYACDVCGKVYQHKQTLDRH 81
+ Y C C + + K+ L H
Sbjct: 92 EMPYKCSSCSQQFMQKKDLQSH 113
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 1 MYACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHL 50
++ C VC + ++ + L H G+ P + C C + QK L H+
Sbjct: 66 VFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHM 114
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPK-FECPHCPYRSKRKDTLDRHMKIIH 115
Y C VC +VY H RH + K + CP C RKD + H+KIIH
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQ 54
+ C+ CGK Y+ L RH++ G P+ CP+C R ++ +NRHL Q
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPR-SCPECGKCFRDQSEVNRHLKVHQ 56
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
+ C+ CGK Y+ L RH++ G P+ CP C + + ++RH+K+
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPR-SCPECGKCFRDQSEVNRHLKV 54
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
+ C +CGK ++ TL H P + C C R QK+ + +H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFIH----TGEK 56
Query: 62 MYACDVCGKVYQHKQTLDRHKKDECG 87
+ C VCGK + L H + G
Sbjct: 57 PHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 31 FGCPQCPYRSRQKATLNRHLGWEQLQGNAHVMYACDVCGKVYQHKQTLDRHKKDECGQEP 90
F C C ++ +TL+ HL L + Y C CGK + K + +H G++P
Sbjct: 2 FDCKICGKSFKRSSTLSTHL----LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP 57
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHM 111
Y C VCGK ++ K L H K G +P +EC C R +D+ RH+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSFHRHV 85
Score = 32.0 bits (71), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 62 MYACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
+Y C CGK + HK DRH G P + C C + K K L HMKI
Sbjct: 10 LYPCQ-CGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKI 59
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHL 50
Y C VCGK+++ K L H K G +P + C C R + + +RH+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSFHRHV 85
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 65 CDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
C+VCGK + K L H + G +P ++C C Y + +L++H++I
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRI 58
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 4 CDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHVMY 63
C+VCGK + K L H + G +P + C C Y + ++LN+HL + +
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSDE----RPF 65
Query: 64 ACDVCGKVYQHKQTLDRHKKDECGQE 89
C +C ++ L H + G
Sbjct: 66 KCQICPYASRNSSQLTVHLRSHTGDS 91
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 28 EPKFGCP--QCPYRSRQKATLNRHLGWEQLQGNAHVMYACDVCGKVYQHKQTLDRHKKDE 85
E + CP C R Q +L RH+ Q + C +C + + L H +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKP----FQCRICMRNFSRSDHLTTHIRTH 57
Query: 86 CGQEPKFECPHCPYRSKRKDTLDRHMKI 113
G++P F C C + R D RH KI
Sbjct: 58 TGEKP-FACDICGRKFARSDERKRHTKI 84
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 2 YACDV--CGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNA 59
YAC V C + + +L RH + GQ+P F C C + L H+
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTH----TG 59
Query: 60 HVMYACDVCGKVYQHKQTLDRHKK 83
+ACD+CG+ + RH K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTK 83
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKIIH 115
+ C+VC + + ++ L RH + ++P + C C R+D L RH + IH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIH 54
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 2 YACDV--CGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNA 59
YAC V C + + L RH + GQ+P F C C + + + HL
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKP-FQCRIC----MRNFSRSDHLTTHIRTHTG 59
Query: 60 HVMYACDVCGKVYQHKQTLDRHKK 83
+ACD+CG+ + RH K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTK 83
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 28 EPKFGCP--QCPYRSRQKATLNRHLGWEQLQGNAHVMYACDVCGKVYQHKQTLDRHKKDE 85
E + CP C R + L RH+ Q + C +C + + L H +
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKP----FQCRICMRNFSRSDHLTTHIRTH 57
Query: 86 CGQEPKFECPHCPYRSKRKDTLDRHMKI 113
G++P F C C + R D RH KI
Sbjct: 58 TGEKP-FACDICGRKFARSDERKRHTKI 84
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C VCGK + H+Q+L H++ G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C VCGK + H+++L H++ G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 28 EPKFGCP--QCPYRSRQKATLNRHLGWEQLQGNAHVMYACDVCGKVYQHKQTLDRHKKDE 85
E + CP C R + A L RH+ Q + C +C + + L H +
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKP----FQCRICMRNFSRSDHLTTHIRTH 57
Query: 86 CGQEPKFECPHCPYRSKRKDTLDRHMKI 113
G++P F C C + R D RH KI
Sbjct: 58 TGEKP-FACDICGRKFARSDERKRHTKI 84
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 2 YACDV--CGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNA 59
YAC V C + + L RH + GQ+P F C C + + + HL
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKP-FQCRICM----RNFSRSDHLTTHIRTHTG 59
Query: 60 HVMYACDVCGKVYQHKQTLDRHKK 83
+ACD+CG+ + RH K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTK 83
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 28 EPKFGCP--QCPYRSRQKATLNRHLGWEQLQGNAHVMYACDVCGKVYQHKQTLDRHKKDE 85
E + CP C R + A L RH+ Q + C +C + + L H +
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKP----FQCRICMRNFSRSDHLTTHIRTH 57
Query: 86 CGQEPKFECPHCPYRSKRKDTLDRHMKI 113
G++P F C C + R D RH KI
Sbjct: 58 TGEKP-FACDICGRKFARSDERKRHTKI 84
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 2 YACDV--CGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNA 59
YAC V C + + L RH + GQ+P F C C + + + HL
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKP-FQCRICM----RNFSRSDHLTTHIRTHTG 59
Query: 60 HVMYACDVCGKVYQHKQTLDRHKK 83
+ACD+CG+ + RH K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTK 83
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 33.1 bits (74), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 2 YACDV--CGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNA 59
YAC V C + + L RH + GQ+P F C C + + + HL
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICM----RNFSRSDHLTTHIRTHTG 59
Query: 60 HVMYACDVCGKVYQHKQTLDRHKK 83
+ACD+CG+ + RH K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTK 83
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 28 EPKFGCP--QCPYRSRQKATLNRHLGWEQLQGNAHVMYACDVCGKVYQHKQTLDRHKKDE 85
E + CP C R + L RH+ Q + C +C + + L H +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKP----FQCRICMRNFSRSDHLTTHIRTH 57
Query: 86 CGQEPKFECPHCPYRSKRKDTLDRHMKI 113
G++P F C C + R D RH KI
Sbjct: 58 TGEKP-FACDICGRKFARSDERKRHTKI 84
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 33.1 bits (74), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 2 YACDV--CGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNA 59
YAC V C + + L RH + GQ+P F C C + + + HL
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICM----RNFSRSDHLTTHIRTHTG 58
Query: 60 HVMYACDVCGKVYQHKQTLDRHKK 83
+ACD+CG+ + RH K
Sbjct: 59 EKPFACDICGRKFARSDERKRHTK 82
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 28 EPKFGCP--QCPYRSRQKATLNRHLGWEQLQGNAHVMYACDVCGKVYQHKQTLDRHKKDE 85
E + CP C R + L RH+ Q + C +C + + L H +
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKP----FQCRICMRNFSRSDHLTTHIRTH 56
Query: 86 CGQEPKFECPHCPYRSKRKDTLDRHMKI 113
G++P F C C + R D RH KI
Sbjct: 57 TGEKP-FACDICGRKFARSDERKRHTKI 83
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 2 YACDV--CGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNA 59
YAC V C + + L RH + GQ+P F C C + + + HL
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICM----RNFSRSDHLTTHIRTHTG 59
Query: 60 HVMYACDVCGKVYQHKQTLDRHKK 83
+ACD+CG+ + RH K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTK 83
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 28 EPKFGCP--QCPYRSRQKATLNRHLGWEQLQGNAHVMYACDVCGKVYQHKQTLDRHKKDE 85
E + CP C R + L RH+ Q + C +C + + L H +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKP----FQCRICMRNFSRSDHLTTHIRTH 57
Query: 86 CGQEPKFECPHCPYRSKRKDTLDRHMKI 113
G++P F C C + R D RH KI
Sbjct: 58 TGEKP-FACDICGRKFARSDERKRHTKI 84
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 65 CDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMK 112
C CGK ++ L+ H + G++P ++C C Y + +K +L H++
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLE 53
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C+ CGKV++H L RH++ G++P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C+ CGK ++H L RH++ G++P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
Y CD CGK + H L +H++ G++P ++C C ++ L H ++
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGHHRV 68
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRH 49
Y CD CGK + H L +H++ G++P + C +C Q++ L H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGH 65
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 51 GWEQLQGNAHVMYACDVCGKVYQHKQTLDRHKKDECGQEPKFECP 95
G G AC++CGK+++ L+RHK G++P P
Sbjct: 1 GSSGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGP 45
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 3 ACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQ 35
AC++CGK ++ L RHK G++P P
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 30.8 bits (68), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 63 YACDVCGKVYQHKQTLDRHKK---DECGQEPKFECPHCPYRSKRKDTLDRH 110
YAC C K ++ KQ LD H K D F C C R++T+ RH
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 26 GQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHVMYACDVCGKVYQHKQTLDRHKKDE 85
G++P + C C RQK L+ H + C CGK + + T+ RH +
Sbjct: 12 GEKP-YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70
Query: 86 CGQE 89
G +
Sbjct: 71 AGPD 74
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPK 91
+ C CGKV+ HK L H+K G+ P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPS 41
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPK 30
+ C CGK + HK L H+K G+ P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPS 41
>pdb|2KFQ|A Chain A, Nmr Structure Of Fp1
Length = 32
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 92 FECPHCPYRSKRKDTLDRHMK 112
F CP CP R R D L +H+K
Sbjct: 3 FACPACPKRFMRSDALSKHIK 23
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C VCGK + + L +H+K G++P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C VCGK + + L +H+K G++P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPK 91
Y C++CG ++H QTL H + G P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFG 32
Y C++CG ++H +TL H + G P G
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPSSG 42
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPK 91
Y CDVC K + H +L +H++ G++P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPS 41
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPK 30
Y CDVC K + H +L +H++ G++P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPS 41
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y CDVCGKE+ L H++ G++P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y CDVCGK + L H++ G++P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C+ CGK + K L H++ G++P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C+ CGK + K L H++ G++P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 65 CDV--CGKVYQHKQTLDRHKKDECGQEPKFECPH--CPYRSKRKDTLDRHMKI 113
CD CG+++ ++Q L+ HKK + + F CP C K L HMK+
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C+ CGK + K L+RH++ G++P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C+ CGK + K L RH++ G++P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
Y C CGK + L +H++ G++P ++C C + L H +I
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINHQRI 64
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRH 49
Y C CGK + L +H++ G++P + C +C Q + L H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINH 61
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
Y CD C +++K L HK G++P + C C + R L H +I
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRI 67
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 33/89 (37%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
Y CD C +++K L HK G++P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP-------------------------------- 45
Query: 62 MYACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C++CG + L H + G++P
Sbjct: 46 -YRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 78
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 33 CPQCPYRSRQKATLNRHLGWEQ---LQGNAHVMYACDVCGKVYQHKQTLDRHKK 83
C C + RQKA+LN W Q + A + + C+ CGK ++ ++ H+
Sbjct: 10 CEICGFTCRQKASLN----WHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS 59
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 65 CDVCGKVYQHKQTLDRHKK--DECGQEPKFECPHCPYRSKRKDTLDRHMKIIH 115
C++CG + K +L+ H++ E +F C C R ++ D++ H H
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>pdb|1RIM|A Chain A, E6-Binding Zinc Finger (E6apc2)
Length = 33
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 30 KFGCPQCPYRSRQKATLNRHLGWEQLQGN 58
KF CP+CP R + L++H+ +L G
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 91 KFECPHCPYRSKRKDTLDRHMKI 113
KF CP CP R R D L +H+ +
Sbjct: 2 KFACPECPKRFMRSDHLSKHITL 24
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
+ C CGK + K TL H+K G++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
+ C CGK + K TL H+K G++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C+ CGK Y K LD H+K G+ P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C+ CGK Y K L H+K G+ P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C+ CGKV+ L +H+K G++P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C+ CGK + L +H+K G++P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 51 GWEQLQGNAHVMYACDVCGKVYQHKQTLDRHKKDECGQEPK 91
G G A + CD C K ++ + L+ H+ G++P
Sbjct: 1 GSSGSSGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKPS 41
>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 3)
pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f3, Minimized Average Structure
Length = 29
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 91 KFECPHCPYRSKRKDTLDRHMK 112
KF CP CP R R D L +H+K
Sbjct: 2 KFACPECPKRFMRSDHLSKHIK 23
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 30 KFGCPQCPYRSRQKATLNRHLGWEQ 54
KF CP+CP R + L++H+ Q
Sbjct: 2 KFACPECPKRFMRSDHLSKHIKTHQ 26
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 66 DVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMK 112
D CG + L RH + G P F+C C R D L HMK
Sbjct: 42 DGCGWKFARSDELTRHYRKHTGHRP-FQCQKCDRAFSRSDHLALHMK 87
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 57 GNAHVMYACDV--CGKVYQHKQTLDRHKKDECGQEPKFECPH--CPYRSKRKDTLDRHMK 112
G+ + CD CGK Y L H + G++P + C C ++ R D L RH +
Sbjct: 1 GSRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYR 59
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPK 30
Y CD CGK + L RH++ G++P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPS 41
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPK 91
Y CD CGK + L RH++ G++P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPS 41
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 66 DVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMK 112
D CG + L RH + G P F+C C R D L HMK
Sbjct: 41 DGCGWKFARSDELTRHYRKHTGHRP-FQCQKCDRAFSRSDHLALHMK 86
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 61 VMYACDV--CGKVYQHKQTLDRHKKDECGQEPKFECPH--CPYRSKRKDTLDRHMK 112
+ CD CGK Y L H + G++P + C C ++ R D L RH +
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYR 58
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C CGK + K TL H++ G++P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C CGK + K TL H++ G++P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C+ CGKV+ L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMK 112
Y C+ CG + L +H + P + C +C + K K L +HMK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMK 50
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 75 KQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKIIH 115
K L H++ C P F+C +C + +K+ L +HMK H
Sbjct: 22 KAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKKFH 61
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C+ CGKV+ L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C+ CGKV+ L RH++ G +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|3PIC|A Chain A, Glucuronoyl Esterase Catalytic Domain (Cip2_ge) From
Hypocrea Jecorina
pdb|3PIC|B Chain B, Glucuronoyl Esterase Catalytic Domain (Cip2_ge) From
Hypocrea Jecorina
pdb|3PIC|C Chain C, Glucuronoyl Esterase Catalytic Domain (Cip2_ge) From
Hypocrea Jecorina
Length = 375
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 23 DECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHVMY 63
D G + FGC + + Q ++ H+G+ Q+ +AH +
Sbjct: 289 DWLGPQSCFGCMTAAHMAWQALGVSDHMGYSQIGAHAHCAF 329
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C +CGK + K L+ H++ G++P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C +CGK + K L H++ G++P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFG 32
Y CD CGK + K +L H + G P G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG 42
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPK 91
Y CD CGK + K +L H + G P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C+ CGK + L RH++ G++P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C+ CGK + L RH++ G++P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
Y C VC + Y +L RH E K+ C C + L + ++
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIH-SWEKKYPCRYCE----KVFPLAEYRTKHEIHHTGER 77
Query: 62 MYACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C CGK + + Q + H K Q+P
Sbjct: 78 RYQCLACGKSFINYQFMSSHIKSVHSQDP 106
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C+ CGKV+ L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C+ CGK + L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C+ CGK + L RH++ G++P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C+ CGK + L RH++ G++P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 68 CGKVYQHKQTLDRHKKDECGQEPKFECP--HCPYRSKRKDTLDRHMKI 113
CGK Y L H + G++P F C C R R D L RH +
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGCERRFARSDELSRHRRT 71
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 65 CDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKIIHFSD 118
C VCG+ + K +RH + + F C +CP L RH+ H S+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQ-VFPCKYCPATFYSSPGLTRHINKCHPSE 83
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C CGK + K TL H++ G++P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C CGK + K TL H++ G++P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 36 CPYRSRQKATLNRHLGWEQLQGNAHVMYACDVCGKVYQHKQTLDRHKKDECGQEPKFECP 95
CP++ K + + L + ++ C CGK + L RH+ G++P F+C
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKP-FQCT 66
Query: 96 H--CPYRSKRKDTLDRHMKI 113
C R L H++I
Sbjct: 67 FEGCGKRFSLDFNLRTHVRI 86
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKIIHF 116
+ C +C + + L H + G++P F C C + R D RH I H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDIQHI 56
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPK 91
+ C+ CGK + H L +H+ G+ P
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENPS 41
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPK 30
+ C+ CGK + H L +H+ G+ P
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENPS 41
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C VC K + K L +H+K G++P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C VC K + K L +H+K G++P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 1 MYACDVCGKEYQHKRTLYRHKKDECGQEPKFG 32
+Y C CGK ++ K +L H++ G P G
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIHTGSGPSSG 41
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 62 MYACDVCGKVYQHKQTLDRHKKDECGQEPK 91
+Y C CGK ++ K +L H++ G P
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIHTGSGPS 39
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 63 YACDVCGKVYQHKQTLDRHK-KDECGQEPKFECPHCPYRSKRKDTLDRHMK 112
Y C +C + T+ H + KF CPHC RK L H++
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 63 YACDVCGKVYQHKQTLDRH 81
YACD+CGK Y+++ L H
Sbjct: 8 YACDICGKRYKNRPGLSYH 26
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 2 YACDVCGKEYQHKRTLYRH 20
YACD+CGK Y+++ L H
Sbjct: 8 YACDICGKRYKNRPGLSYH 26
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y CDVC K +++ +L H++ G++P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y CDVC K +++ +L H++ G++P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C+ CGK + H L H++ G++P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C+ CGK + H L H++ G++P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C CGK + K L +H++ G++P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C CGK + K L +H++ G++P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C CGK + + L+ H+K G++P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C+ CGK ++ + +L H+ G++P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 25.4 bits (54), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C+ CGK ++ + +L H+ G++P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y+C+ CGK + K L HK G +P
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y+C+ CGK + K L HK G +P
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1210
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 58 NAHVMYACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSK 102
+A+ + CD+CG + D ++ C +F + PY +K
Sbjct: 1145 DAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAK 1189
>pdb|1RIK|A Chain A, E6-Binding Zinc Finger (E6apc1)
Length = 29
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 91 KFECPHCPYRSKRKDTLDRHMKI 113
KF CP CP R R D L H+ +
Sbjct: 2 KFACPECPKRFMRSDHLTLHILL 24
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPK 91
Y C CGK ++ K L H + G++P
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTGEKPS 39
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPK 30
Y C CGK ++ K L H + G++P
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTGEKPS 39
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C CGK + K L H + G++P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C CGK + K L H + G++P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 31 FGCPQCPYRSRQKATLNRHL 50
+ CPQC Y S KA LN HL
Sbjct: 10 YKCPQCSYASAIKANLNVHL 29
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C CGKV++ L RH+ G++P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
+ CD+CGK + + L+RH ++P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C+ CGKV+ L H + G++P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 68 CGKVYQHKQTLDRHKKDECGQEP-KFECPHCPYRSKRKDTLDRHMKIIHFSD 118
CGK++ + L HK+ G++P K E C R +HM +H SD
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH-VHTSD 148
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C CGK ++ K +L H++ G++P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C CGK ++ K +L H++ G++P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C+ CGK + + +L H+ G++P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C+ CGKV+ L H++ G +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 57 GNAHVMYACDVCGKVYQHKQTLDRHK 82
G++ + CD+CGK ++ K TL HK
Sbjct: 4 GSSGKTHLCDMCGKKFKSKGTLKSHK 29
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 51 GWEQLQGNAHVMYACDVCGKVYQHKQTLDRHKKDECGQ 88
G G A C CGK+++H L H+ G+
Sbjct: 1 GSSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.475
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,705,191
Number of Sequences: 62578
Number of extensions: 132857
Number of successful extensions: 702
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 305
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)