RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12028
(118 letters)
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 45.2 bits (108), Expect = 2e-07
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
C C K++ K L H + G++P F CP+C +K L H + + +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEH----EARNCMNR 62
Query: 62 M---YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKIIH 115
+ C VC + ++ + L H G+ P ++C C + +K L HM +H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLH 118
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 43.3 bits (103), Expect = 3e-07
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPK-FECPHCPYRSKRKDTLDRHMKIIH 115
Y C VC +VY H RH + K + CP C RKD + H+KIIH
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 32.9 bits (76), Expect = 0.004
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPK-FGCPQCPYRSRQKATLNRHL 50
Y C VC + Y H RH + K + CP C +K + H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 23.7 bits (52), Expect = 8.9
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 2 YACDVCGKEYQHKRTLYRHKK 22
Y C C KE+ K + H K
Sbjct: 41 YPCPFCFKEFTRKDNMTAHVK 61
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 42.8 bits (101), Expect = 6e-07
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 63 YACDVCGKVYQHKQTLDRHKK---DECGQEPKFECPHCPYRSKRKDTLDRHMKIIH 115
C++CG + K +L+ H++ + F C C R ++ D++ H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 37.0 bits (86), Expect = 1e-04
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 2 YACDVCGKEYQHKRTLYRHKK---DECGQEPKFGCPQCPYRSRQKATLNRHL 50
C++CG + K +L H++ + F C C R + ++ H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHR 58
Score = 36.2 bits (84), Expect = 2e-04
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 28 EPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHVMYACDVCGKVYQHKQTLDRHKK 83
C C + RQKA+LN H + + A + + C+ CGK ++ ++ H+
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRS 59
Score = 27.4 bits (61), Expect = 0.53
Identities = 5/36 (13%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCP 37
+ C+ CGK ++ ++ H+ + +
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRS-KSHPALLLAPQESS 73
Score = 24.3 bits (53), Expect = 6.4
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 89 EPKFECPHCPYRSKRKDTLDRHMKI 113
+C C + ++K +L+ H +
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRK 29
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 42.5 bits (101), Expect = 7e-07
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPK-FECPHCPYRSKRKDTLDRHMKIIH 115
Y C +C + T+ H + + F CPHC RK L H++ H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 35.2 bits (82), Expect = 5e-04
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPK-FGCPQCPYRSRQKATLNRHL 50
Y C +C + T+ H + + F CP C +K+ L HL
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 40.2 bits (95), Expect = 6e-06
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
C C K L H++ C P F+C +C + +K+ L +HMK
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKK 59
Score = 37.9 bits (89), Expect = 4e-05
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHL 50
C C K L H++ C P F C C + ++Q + L++H+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHM 57
Score = 31.7 bits (73), Expect = 0.011
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 20/59 (33%)
Query: 33 CPQCPYRSRQKATLNRHLGWEQLQGNAHVM--------YACDVCGKVYQHKQTLDRHKK 83
C +C Y KA L H + C+ C + L +H K
Sbjct: 12 CSECSYSCSSKAALRIH------------ERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 24.0 bits (53), Expect = 5.6
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 2 YACDVCGKEYQHKRTLYRHKK 22
+ C+ C + + L +H K
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMK 58
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 38.2 bits (90), Expect = 5e-05
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 34/115 (29%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
AC++CGK ++ L RHK G++P
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP-------------------------------- 35
Query: 62 MYACDVCGKVYQHKQTLDRHKKDECGQEPK-FECPHCPYRSKRKDTLDRHMKIIH 115
Y+C VCG ++ K + H + G K + C C R D L+ H+K +H
Sbjct: 36 -YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.9 bits (82), Expect = 6e-04
Identities = 13/80 (16%), Positives = 24/80 (30%)
Query: 15 RTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHVMYACDVCGKVYQH 74
+ H + E + C C +++ H+ E + Y C C + +
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 75 KQTLDRHKKDECGQEPKFEC 94
L H E F+
Sbjct: 63 YDALSEHNLKYHPGEENFKL 82
Score = 27.8 bits (61), Expect = 0.43
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 77 TLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKIIH 115
H + E +EC +C +++ + H+ H
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH 42
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 34.4 bits (80), Expect = 0.001
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 63 YACDVCGKVYQHKQTLDRHKK---DECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
YAC C K ++ KQ LD H K D F C C R++T+ RH
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Score = 30.6 bits (70), Expect = 0.035
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 2 YACDVCGKEYQHKRTLYRHKK---DECGQEPKFGCPQCPYRSRQKATLNRH 49
YAC C K ++ K+ L H K D F C +C ++ T+ RH
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 25.9 bits (58), Expect = 1.5
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQC 36
+ C CGK + + T+ RH + G +
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNCAGPDG-VEGENS 81
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 33.2 bits (75), Expect = 0.002
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
Y C+ CG + L +H + P + C +C + K K L +HMK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKS 51
Score = 32.4 bits (73), Expect = 0.004
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHL 50
Y C+ CG + L +H + P + C C + + K L +H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHM 49
Score = 27.0 bits (59), Expect = 0.50
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 30 KFGCPQCPYRSRQKATLNRHLGWEQLQGNAHVMYACDVCGKVYQHKQTLDRHKKDECG 87
K+ C +C R ++ + L +H+ Y C C ++ K L +H K +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTH----TDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 32.8 bits (76), Expect = 0.003
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKIIH 115
+ C+VC + + ++ L RH + ++P + C C R+D L RH + IH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 25.9 bits (58), Expect = 1.1
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRH 49
+ C+VC + + + L RH + ++P + C C ++ L RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRH 49
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 33.6 bits (78), Expect = 0.003
Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 34/112 (30%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
+ C+VCGK + K L H + G +P
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKP-------------------------------- 36
Query: 62 MYACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
Y C C +L++H + + P F+C CPY S+ L H++
Sbjct: 37 -YKCKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVHLRS 86
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 33.6 bits (78), Expect = 0.006
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
Y C CGK + K+ L RH++ G++P + CP+C Q+A L H
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAH----------QR 98
Query: 62 M------YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
YAC CGK + L H++ G++P ++CP C R+D L H +
Sbjct: 99 THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTHQRT 155
Score = 32.8 bits (76), Expect = 0.011
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
YAC CGK + L H++ G++P + CP+C K L RH
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRH----------QR 70
Query: 62 M------YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
Y C CGK + + L H++ G++P + CP C + L H +
Sbjct: 71 THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAHQRT 127
Score = 28.2 bits (64), Expect = 0.55
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 17/88 (19%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
YAC CGK + L H++ G++P + CP+C ++ L+ H
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTH----------QR 154
Query: 62 M------YACDVCGKVYQHKQTLDRHKK 83
Y C CGK + + L+ H++
Sbjct: 155 THTGEKPYKCPECGKSFSRRDALNVHQR 182
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 32.4 bits (75), Expect = 0.007
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 17/88 (19%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
+ C +CGK ++ TL H P + C C R QK+ + +H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKH----------TF 50
Query: 62 M------YACDVCGKVYQHKQTLDRHKK 83
+ + C VCGK + L H +
Sbjct: 51 IHTGEKPHKCQVCGKAFSQSSNLITHSR 78
Score = 28.9 bits (66), Expect = 0.11
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
+ C +CGK ++ TL H P + C +C R +K + +H I
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFI 51
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 32.0 bits (72), Expect = 0.016
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Query: 28 EPKFGCPQCPYRSRQKATLNRHLGWEQ-LQGNAHVMYACDVCGKVYQHKQTLDRHKKDEC 86
KF C C L H+ + + H + K++L + E
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED 76
Query: 87 GQEPKFECPHCPYRSKRKDTLDRHMK 112
Q+ +C +C + + L HM
Sbjct: 77 AQKV-LKCMYCGHSFESLQDLSVHMI 101
Score = 30.5 bits (68), Expect = 0.064
Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
+ C C Y L H + + + + ++ + R +++G
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNE--TGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77
Query: 62 --MYACDVCGKVYQHKQTLDRH 81
+ C CG ++ Q L H
Sbjct: 78 QKVLKCMYCGHSFESLQDLSVH 99
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 30.7 bits (70), Expect = 0.021
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 63 YACDV--CGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
YAC V C + + L RH + GQ+P F+C C R D L H++
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRT 71
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 31.3 bits (72), Expect = 0.023
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 18/99 (18%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
+ C CG+ + L H++ + P + C C R++ L H
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDH----------RY 66
Query: 62 M------YACDVCGKVYQHKQTLDRHKKDECGQEPKFEC 94
+ + C CGK + +TL HK
Sbjct: 67 IHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSS-PTA 104
Score = 27.8 bits (63), Expect = 0.42
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
+ C CG+ + L H++ + P + C C +R+D L H I
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDHRYI 67
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 30.9 bits (71), Expect = 0.025
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
+ C +C + + L H + G++P F C C + R D RH KI
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHTKI 84
Score = 29.4 bits (67), Expect = 0.098
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 23/92 (25%)
Query: 2 YACDV--CGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNA 59
YAC V C + + +L RH + GQ+P F C C + L H
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTH---------- 53
Query: 60 HVM--------YACDVCGKVYQHKQTLDRHKK 83
+ +ACD+CG+ + RH K
Sbjct: 54 --IRTHTGEKPFACDICGRKFARSDERKRHTK 83
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 30.9 bits (71), Expect = 0.026
Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 20/89 (22%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
+ C +C + + L H + G++P F C C + + RH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRH------------ 50
Query: 62 M-------YACDVCGKVYQHKQTLDRHKK 83
D ++ L+
Sbjct: 51 RDIQHILPILEDKVEELLSKNYHLENEVA 79
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 31.4 bits (70), Expect = 0.028
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKIIH 115
+ C +C + +L +H + E CP C D+ H+ H
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 26.4 bits (57), Expect = 1.6
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHL 50
+ C +C + +L +H + E CP C + H+
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHV 120
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 29.9 bits (66), Expect = 0.084
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 8/82 (9%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
Y C +C + H++ CP C R H + +
Sbjct: 17 YQCRLCNAKLSSLLEQGSHER---LCRNAAVCPYCSLRFFSPELKQEHESKCEYK----- 68
Query: 62 MYACDVCGKVYQHKQTLDRHKK 83
C C + ++ ++ RH+
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQV 90
Score = 26.4 bits (57), Expect = 1.4
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Query: 60 HVMYACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKIIH 115
C C + + H+ + K C C K ++ RH +H
Sbjct: 40 RNAAVCPYCSLRFFSPELKQEHESKC--EYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 24.9 bits (53), Expect = 5.8
Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 3/54 (5%)
Query: 58 NAHVMYACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHM 111
+Y C +C H++ CP+C R + H
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHER---LCRNAAVCPYCSLRFFSPELKQEHE 62
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 29.4 bits (67), Expect = 0.088
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 63 YACDV--CGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
Y CD CG + L RH + G P F+C C R D L HMK
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQKCDRAFSRSDHLALHMKR 87
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 29.1 bits (66), Expect = 0.12
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 63 YAC--DVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
Y C + C + L RH + G +P F+C C R D L HMK
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALHMKR 97
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 28.6 bits (65), Expect = 0.12
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
Y CD C +++K L HK G++P + C C + R L H +I
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRI 67
Score = 28.2 bits (64), Expect = 0.18
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRH 49
Y CD C +++K L HK G++P + C C + + A L H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTH 64
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 28.5 bits (64), Expect = 0.16
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 62 MYACDV--CGKVYQHKQTLDRHKKDECGQEPKFEC--PHCPYRSKRKDTLDRHMKI 113
+ C CGK Y L H + G++P F C C R R D L RH +
Sbjct: 17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGCERRFARSDELSRHRRT 71
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 27.4 bits (60), Expect = 0.24
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 92 FECPHCPYRSKRKDTLDRHMK 112
F CP CP R R D L +H+K
Sbjct: 3 FACPACPKRFMRSDALSKHIK 23
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 28.8 bits (65), Expect = 0.26
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 8/59 (13%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPK--------FECPHCPYRSKRKDTLDRHMKI 113
C + + L H E P+ ECP K K L H+++
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
Score = 28.0 bits (63), Expect = 0.45
Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 33/132 (25%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPK--------FGCPQCPYRSRQKATLNRHLGWE 53
C + + L H E P+ CP+ + K L H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH---- 81
Query: 54 QLQGNAHVM--------YACDV--CGKVYQHKQTLDRHKKDECGQEPKFECPH--CPYRS 101
+ + C CGK++ + L HK+ G++P F+C C R
Sbjct: 82 --------IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP-FKCEFEGCDRRF 132
Query: 102 KRKDTLDRHMKI 113
+HM +
Sbjct: 133 ANSSDRKKHMHV 144
Score = 26.5 bits (59), Expect = 1.6
Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 9/114 (7%)
Query: 7 CGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHL-----GWEQLQGNAHV 61
G Q + K + Q C L H+ G + +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLS-RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 62 MYACDVCGKVYQHKQTLDRHKKDECGQEPKFECPH--CPYRSKRKDTLDRHMKI 113
C GK ++ K L H + G++P F CP C R + L H +
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGEKP-FPCPFPGCGKIFARSENLKIHKRT 114
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 28.0 bits (63), Expect = 0.30
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 63 YACDV--CGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKIIH 115
Y C C K + L RH+K G + C + K +H+ H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 26.0 bits (58), Expect = 1.3
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 62 MYACDV--CGKVYQHKQTLDRHKKDECGQEPKFECPH--CPYRSKRKDTLDRHMKI 113
MY C CGK ++ L H+ Q P +ECPH C R L RH K+
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRHEKV 55
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 26.7 bits (60), Expect = 0.34
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 63 YACDVCGKVYQHKQTLDRH 81
Y C++CG ++H QTL H
Sbjct: 12 YPCEICGTRFRHLQTLKSH 30
Score = 26.3 bits (59), Expect = 0.56
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 2 YACDVCGKEYQHKRTLYRH 20
Y C++CG ++H +TL H
Sbjct: 12 YPCEICGTRFRHLQTLKSH 30
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 28.2 bits (64), Expect = 0.36
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 13/80 (16%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
Y C VCGK+++ K L H K G +P + C C R + + +RH+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSFHRHV---------TS 87
Query: 62 M---YACDVCGKVYQHKQTL 78
Y +
Sbjct: 88 CTKSYEAAKAEQNTTEASGP 107
Score = 27.4 bits (62), Expect = 0.66
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 15/99 (15%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHV 61
Y C CGK + HK RH G P +GC C + + K L H+ H
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHM-------KIHT 61
Query: 62 M---YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHC 97
Y C++C K + + + H+ + +E
Sbjct: 62 GIKPYECNICAKRFMWRDSF--HRHVTSCTKS-YEAAKA 97
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 27.0 bits (61), Expect = 0.63
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHC 97
Y CD CGK + H L +H++ G++P ++C C
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDEC 52
Score = 26.6 bits (60), Expect = 0.68
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRH 49
Y CD CGK + H L +H++ G++P + C +C Q++ L H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGH 65
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.79
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPH 96
Y C VCGK + H+Q+L H++ G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP-SGPSS 45
>1vzy_A 33 kDa chaperonin; chaperone, heat shock protein, crystal
engineering, molecular chaperone, redox-active center,
PSI; 1.97A {Bacillus subtilis} SCOP: d.193.1.1 g.81.1.1
Length = 291
Score = 27.6 bits (62), Expect = 0.82
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 15/55 (27%)
Query: 27 QEPKFGCPQCPYRSRQK--ATLNRHLGWEQL------QGNAHVMYACDVCGKVYQ 73
+F CP C S+++ + LG +++ G A + C C + Y
Sbjct: 229 MPVRFHCP-C---SKERFETAI-LGLGKKEIQDMIEEDGQAEAV--CHFCNEKYL 276
>1vq0_A 33 kDa chaperonin; TM1394, joint center for structural genomics,
protein structure initiative, PSI, chaperone; HET: UNL;
2.20A {Thermotoga maritima} SCOP: d.193.1.1 g.81.1.1
Length = 302
Score = 27.6 bits (62), Expect = 0.99
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 14/54 (25%)
Query: 27 QEPKFGCPQCPYRSRQK--ATLNRHLGWEQLQ-----GNAHVMYACDVCGKVYQ 73
E K+ C C +R+K L L ++L+ G V+ C C Y
Sbjct: 237 AEIKYKCD-C---NREKAKNAL-LVLDKKELEDMRKEGKGEVV--CKWCNTRYV 283
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 26.3 bits (59), Expect = 1.0
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRH 49
Y C CGK + L +H++ G++P + C +C Q + L H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINH 61
Score = 25.5 bits (57), Expect = 2.0
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
Y C CGK + L +H++ G++P ++C C + L H +I
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINHQRI 64
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 1.0
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFEC 94
+ CD+CGK + + L+RH ++P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP-SGP 43
Score = 25.1 bits (56), Expect = 1.7
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGC 33
+ CD+CGK + + L RH ++P G
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP-SGP 43
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 25.7 bits (56), Expect = 1.1
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQC 36
AC++CGK ++ L RHK G++P +
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPS 46
Score = 25.7 bits (56), Expect = 1.2
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHC 97
AC++CGK+++ L+RHK G++P +
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPS 46
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 26.0 bits (58), Expect = 1.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 63 YACDV--CGKVYQHKQTLDRHKKDECGQEPKFECPH--CPYRSKRKDTLDRHMKI 113
CD CG+++ ++Q L+ HKK + + F CP C K L HMK+
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.2 bits (54), Expect = 1.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 57 GNAHVMYACDVCGKVYQHKQTLDRHK 82
G++ + CD+CGK ++ K TL HK
Sbjct: 4 GSSGKTHLCDMCGKKFKSKGTLKSHK 29
Score = 23.6 bits (50), Expect = 5.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 2 YACDVCGKEYQHKRTLYRHK 21
+ CD+CGK+++ K TL HK
Sbjct: 10 HLCDMCGKKFKSKGTLKSHK 29
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 26.4 bits (59), Expect = 1.7
Identities = 24/134 (17%), Positives = 37/134 (27%), Gaps = 34/134 (25%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDEC---GQEPKFGCPQCPYRSRQKA-----TLNRHLGWE 53
D C +E+ + L H E ++ F C + L H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGGCSRELRPFKAQYMLVVH---- 58
Query: 54 QLQGNAHVM--------YACDV--CGKVYQHKQTLDRHKKDECGQEPKFECPH--CPYRS 101
M + C C K Y + L H + G++P + C H C
Sbjct: 59 --------MRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAF 109
Query: 102 KRKDTLDRHMKIIH 115
+H H
Sbjct: 110 SNASDRAKHQNRTH 123
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.8
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPH 96
Y CDVC K + H +L +H++ G++P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP-SGPSS 45
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 25.8 bits (56), Expect = 1.9
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 16 TLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLGWEQLQGNAHVMYACDVCGKVYQHK 75
+ + +K G C +C +++TL+R C+ C K +
Sbjct: 5 SSGKRQKIHLGDRS-QKCSKCGIIFIRRSTLSRRKT-----------PMCEKCRKDSCQE 52
Query: 76 QTLDRHKKDECGQEP 90
L++ + +E G++
Sbjct: 53 AALNKDEGNESGKKT 67
Score = 25.0 bits (54), Expect = 2.8
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHLG 51
C CG + + TL R K C +C S Q+A LN+ G
Sbjct: 19 QKCSKCGIIFIRRSTLSRRK--------TPMCEKCRKDSCQEAALNKDEG 60
Score = 24.6 bits (53), Expect = 4.1
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 8/51 (15%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
C CG ++ + TL R K C C S ++ L++
Sbjct: 19 QKCSKCGIIFIRRSTLSRRKT--------PMCEKCRKDSCQEAALNKDEGN 61
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 26.0 bits (56), Expect = 1.9
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKIIHFSD 118
+C C V + + + C QE F C HC + + + H+ H S
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENCKQEM-FTCHHCGKQLRSLAGMKYHVMANHNSL 89
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 24.9 bits (53), Expect = 2.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 88 QEPKFECPHCPYRSKRKDTLDRHMKI 113
E + CP C R KRKD + H++
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRS 32
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 25.9 bits (58), Expect = 2.2
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFEC--PHCPYRSKRKDTLDRHMKI 113
+ C C + + L H + G++P F C P C + R D L RH +
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRHHNM 118
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 25.7 bits (55), Expect = 2.3
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 54 QLQGNAHVMYACDVCGKV-YQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMK 112
Q + C C V + L +H + + +C HC + K K L+ H
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Query: 113 IIHFSD 118
H +
Sbjct: 76 AEHSAK 81
>1i7f_A Heat shock protein 33; HSP33, redox sensitive molecular chaperone,
chaperone; 2.70A {Escherichia coli} SCOP: d.193.1.1 PDB:
1xjh_A
Length = 292
Score = 26.4 bits (59), Expect = 2.3
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 15/55 (27%)
Query: 27 QEPKFGCPQCPYRSRQK--ATLNRHLGWEQL------QGNAHVMYACDVCGKVYQ 73
Q+ +F C C SR++ L + L E++ G + CD CG Y
Sbjct: 224 QDVEFKCT-C---SRERSADAL-KTLPDEEVDSILAEDGEIDM--HCDYCGNHYL 271
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 24.6 bits (54), Expect = 2.4
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 89 EPKFECPHCPYRSKRKDTLDRHMK 112
F+CP C R D L H K
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRK 32
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 24.6 bits (54), Expect = 2.5
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 63 YACDVCGKVYQHKQTLDRHKK 83
Y+C C + + L +H+K
Sbjct: 11 YSCAECKETFSDNNRLVQHQK 31
Score = 24.2 bits (53), Expect = 3.7
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 2 YACDVCGKEYQHKRTLYRHKK 22
Y+C C + + L +H+K
Sbjct: 11 YSCAECKETFSDNNRLVQHQK 31
>3av0_A DNA double-strand break repair protein MRE11; DNA repair,
calcineurin-like phosphoesterase, ABC transporte
domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus
jannaschii} PDB: 3auz_A*
Length = 386
Score = 26.4 bits (58), Expect = 2.6
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 108 DRHMKIIHFSD 118
HM +H +D
Sbjct: 18 GSHMMFVHIAD 28
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.3
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFEC 94
Y CDVC K +++ +L H++ G++P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP-SGP 43
Score = 23.2 bits (51), Expect = 7.7
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 2 YACDVCGKEYQHKRTLYRHKK 22
Y CDVC K +++ +L H++
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQR 33
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 3.9
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPH 96
Y C+ CGK + + +L H+ G++P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP-SGPSS 45
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C+ CGK Y + LD H++ G++
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKT 40
Score = 23.6 bits (52), Expect = 6.8
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGC 33
Y C+ CGK Y + L H++ G++ G
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKT-SGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.2
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPH 96
+ C CGK + L++H++ G++P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP-SGPSS 45
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 23.7 bits (51), Expect = 4.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 91 KFECPHCPYRSKRKDTLDRHMK 112
KF CP CP R R D L H+
Sbjct: 2 KFACPECPKRFMRSDHLTLHIL 23
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.4
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFEC 94
+ C CGKV+ HK L H+K G+ P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP-SGP 43
Score = 23.2 bits (51), Expect = 8.4
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGC 33
+ C CGK + HK L H+K G+ P G
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP-SGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.4
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPH 96
Y+C+VCGK + L++H + +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETL-SGPSS 45
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 23.7 bits (51), Expect = 5.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 91 KFECPHCPYRSKRKDTLDRHMK 112
KF CP CP R R D L +H+
Sbjct: 2 KFACPECPKRFMRSDHLSKHIT 23
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 23.7 bits (52), Expect = 5.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 63 YACDVCGKVYQHKQTLDRHK 82
+ CD CGK + + L H+
Sbjct: 13 HTCDECGKNFCYISALRIHQ 32
Score = 23.3 bits (51), Expect = 7.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 2 YACDVCGKEYQHKRTLYRHK 21
+ CD CGK + + L H+
Sbjct: 13 HTCDECGKNFCYISALRIHQ 32
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 5.2
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFEC 94
Y C+ CGK + L H K ++
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKS-SGP 43
Score = 22.9 bits (50), Expect = 9.8
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGC 33
Y C+ CGK + L H K ++ G
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKS-SGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 23.7 bits (52), Expect = 5.5
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 63 YACDVCGKVYQHKQTLDRHKK 83
+ C CG+ + K L++H++
Sbjct: 13 HQCHECGRGFTLKSHLNQHQR 33
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.7 bits (52), Expect = 5.6
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C CGK + L +H ++P
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 23.3 bits (51), Expect = 6.9
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y C CGK + L +H ++P
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKP 40
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 23.7 bits (52), Expect = 5.7
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
+ C C + +L H+ G++P
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKP 40
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 25.5 bits (56), Expect = 5.8
Identities = 5/25 (20%), Positives = 7/25 (28%), Gaps = 3/25 (12%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECG 26
A + Y +YR G
Sbjct: 47 NAAPGSTESYSLDEIVYR---SRSG 68
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 23.4 bits (51), Expect = 6.4
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFG 32
Y C CGK + + +L H++ P G
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG 42
Score = 23.0 bits (50), Expect = 8.3
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y C CGK + + +L H++ P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 23.3 bits (51), Expect = 6.9
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFEC 94
Y C CGK ++ K +L H++ G++P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP-SGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 23.3 bits (51), Expect = 6.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
Y CD CGK + K +L H + G P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 22.9 bits (50), Expect = 9.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
Y CD CGK + K +L H + G P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 7.0
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPH 96
Y C CGK + + L +H+K Q+P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP-SGPSS 45
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 7.0
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFEC 94
Y C+ CGK + H L H++ G++P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP-SGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 7.1
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFEC 94
Y C+ CGK + K L H++ G++P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP-SGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 7.1
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFEC 94
Y CDVCGK + L H++ G++P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP-SGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 7.4
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPH 96
Y C CGK + + +H++ GQ P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRP-SGPSS 45
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.3 bits (49), Expect = 7.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 92 FECPHCPYRSKRKDTLDRHMK 112
++CP C Y S K L+ H++
Sbjct: 10 YKCPQCSYASAIKANLNVHLR 30
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 7.5
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
+ C CG + +L++H + +P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDP 40
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 24.9 bits (55), Expect = 7.5
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 63 YAC--DVCGKVYQHKQTLDRHKKDECGQEPK--FECPHCPYRSKRKDTLDRHMKIIH 115
Y C + C K + L RH+K G K C K +H+ H
Sbjct: 135 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFV---GKTWTLYLKHVAECH 188
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 7.6
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPH 96
Y C VCGK + + L +H+K G++P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP-SGPSS 45
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 8.0
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFEC 94
Y CD CGK + L RH++ G++P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP-SGP 43
Score = 22.9 bits (50), Expect = 9.6
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQ 35
Y CD CGK + L RH++ G++P G
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP-SGPSS 45
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 8.0
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPH 96
Y C+ CGK + +L H+ G++P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP-SGPSS 45
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32
chimeric protein; DNA double-strand break repair,
nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe}
PDB: 4fbq_A*
Length = 472
Score = 24.9 bits (53), Expect = 8.0
Identities = 5/51 (9%), Positives = 12/51 (23%), Gaps = 1/51 (1%)
Query: 68 CGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKIIHFSD 118
+ + + K S + ++I+ SD
Sbjct: 35 KSNANSRHTSKYYSGRKNFKKFQKKASQKVD-GSAGSAGSENTIRILISSD 84
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 8.2
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFEC 94
Y C+ CGKV++H L RH++ G++P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP-SGP 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 8.3
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFEC 94
Y C+ CGK Y K LD H+K G+ P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP-SGP 43
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins,
DNA breaks, DOUB stranded, DNA repair, DNA repair
enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB:
3qg5_C
Length = 379
Score = 24.7 bits (54), Expect = 8.6
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 111 MKIIHFSD 118
MKI+H SD
Sbjct: 1 MKILHTSD 8
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 8.7
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFEC 94
C CGK + K L H++ +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKH-SGP 43
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 22.9 bits (49), Expect = 8.8
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 92 FECPHCPYRSKRKDTLDRHMKIIHFSD 118
+ C C R+D L RH + IH +
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSGN 29
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein,
structural genomics, riken struc genomics/proteomics
initiative, RSGI; 1.80A {Thermus thermophilus} SCOP:
c.47.1.10 PDB: 2ywo_A
Length = 188
Score = 24.6 bits (54), Expect = 9.2
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 92 FECPHCPY 99
F C HCPY
Sbjct: 40 FMCNHCPY 47
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 22.9 bits (50), Expect = 9.3
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFEC 94
+ C CGK ++ K L H++ G++
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKS-GPS 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 22.9 bits (50), Expect = 9.6
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPH 96
+ C CGK + + L+ H K G++P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP-SGPSS 45
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 22.9 bits (50), Expect = 9.7
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
+ C CGK + +H++ G++P
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 9.8
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPH 96
+ C CGK + K TL H+K G++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP-SGPSS 45
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
hypothetical protein; 2.05A {Sinorhizobium meliloti}
Length = 218
Score = 24.7 bits (54), Expect = 9.8
Identities = 3/8 (37%), Positives = 4/8 (50%)
Query: 92 FECPHCPY 99
F CP+
Sbjct: 66 FISNRCPF 73
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 23.3 bits (51), Expect = 9.9
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHC 97
Y C CGK + L+ H K E +C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.475
Gapped
Lambda K H
0.267 0.0776 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,727,814
Number of extensions: 83264
Number of successful extensions: 862
Number of sequences better than 10.0: 1
Number of HSP's gapped: 754
Number of HSP's successfully gapped: 420
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)