RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12028
(118 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 29.7 bits (66), Expect = 0.015
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
Y C CGK + HK DRH + C C + K K L HMKI
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHMKI 52
Score = 26.2 bits (57), Expect = 0.28
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 35 QCPYRSRQKATLNRHLGWEQLQGNAHVMYACDVCGKVYQHKQTLDRHKK 83
QC K+ +RH+ Y C VCGK ++ K L H K
Sbjct: 7 QCGKSFTHKSQRDRHMSMHL----GLRPYGCGVCGKKFKMKHHLVGHMK 51
Score = 25.4 bits (55), Expect = 0.53
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEPKFGCPQCPYRSRQKATLNRHL 50
Y C CGK + HK RH +GC C + + K L H+
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHM 50
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 28.0 bits (63), Expect = 0.039
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 92 FECPHCPYRSKRKDTLDRHMKIIH 115
+ C C R D L+ H+K +H
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVH 29
Score = 23.0 bits (50), Expect = 2.8
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEPKFEC 94
Y C CGK + L+ H K E +C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 22.6 bits (49), Expect = 4.3
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 2 YACDVCGKEYQHKRTLYRHKK 22
Y C CGK + L H K
Sbjct: 6 YICQSCGKGFSRPDHLNGHIK 26
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.9 bits (60), Expect = 0.11
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 92 FECPHCPYRSKRKDTLDRHMKIIH 115
+EC C R + T+ H+ H
Sbjct: 9 YECYICHARFTQSGTMKMHILQKH 32
Score = 24.2 bits (53), Expect = 1.1
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 63 YACDVCGKVYQHKQTLDRHKK 83
Y C +C + T+ H
Sbjct: 9 YECYICHARFTQSGTMKMHIL 29
Score = 23.0 bits (50), Expect = 2.7
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 2 YACDVCGKEYQHKRTLYRHKK 22
Y C +C + T+ H
Sbjct: 9 YECYICHARFTQSGTMKMHIL 29
Score = 21.9 bits (47), Expect = 6.7
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 31 FGCPQCPYRSRQKATLNRHL 50
+ C C R Q T+ H+
Sbjct: 9 YECYICHARFTQSGTMKMHI 28
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 25.0 bits (54), Expect = 0.51
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQEP 90
AC++CGK+++ L+RHK G++P
Sbjct: 6 VACEICGKIFRDVYHLNRHKLSHSGEKP 33
Score = 23.1 bits (49), Expect = 2.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQEP 29
AC++CGK ++ L RHK G++P
Sbjct: 6 VACEICGKIFRDVYHLNRHKLSHSGEKP 33
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 24.9 bits (55), Expect = 0.63
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 92 FECPHCPYRSKRKDTLDRHMKI 113
+ C C R L +H ++
Sbjct: 8 YGCVECGKAFSRSSILVQHQRV 29
Score = 24.9 bits (55), Expect = 0.66
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 63 YACDVCGKVYQHKQTLDRHKK 83
Y C CGK + L +H++
Sbjct: 8 YGCVECGKAFSRSSILVQHQR 28
Score = 24.1 bits (53), Expect = 1.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 2 YACDVCGKEYQHKRTLYRHKK 22
Y C CGK + L +H++
Sbjct: 8 YGCVECGKAFSRSSILVQHQR 28
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 25.0 bits (55), Expect = 0.64
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 89 EPKFECPHCPYRSKRKDTLDRHMKIIH 115
E + C HC ++K LD H K H
Sbjct: 6 EKPYACSHCDKTFRQKQLLDMHFKRYH 32
Score = 23.9 bits (52), Expect = 1.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 63 YACDVCGKVYQHKQTLDRHKK 83
YAC C K ++ KQ LD H K
Sbjct: 9 YACSHCDKTFRQKQLLDMHFK 29
Score = 23.1 bits (50), Expect = 2.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 2 YACDVCGKEYQHKRTLYRHKK 22
YAC C K ++ K+ L H K
Sbjct: 9 YACSHCDKTFRQKQLLDMHFK 29
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 24.6 bits (54), Expect = 0.75
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 92 FECPHCPYRSKRKDTLDRHMKI 113
F CP CP R R D L +H+K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKT 24
Score = 22.3 bits (48), Expect = 4.8
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 63 YACDVCGKVYQHKQTLDRHKK 83
+AC C K + L +H K
Sbjct: 3 FACPECPKRFMRSDHLSKHIK 23
Score = 21.9 bits (47), Expect = 5.8
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 2 YACDVCGKEYQHKRTLYRHKK 22
+AC C K + L +H K
Sbjct: 3 FACPECPKRFMRSDHLSKHIK 23
Score = 21.5 bits (46), Expect = 9.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 31 FGCPQCPYRSRQKATLNRH 49
F CP+CP R + L++H
Sbjct: 3 FACPECPKRFMRSDHLSKH 21
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 24.6 bits (53), Expect = 0.81
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 92 FECPHCPYRSKRKDTLDRHMKIIH 115
+ CP C RKD + H+KIIH
Sbjct: 2 YPCPFCFKEFTRKDNMTAHVKIIH 25
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 24.1 bits (53), Expect = 1.2
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 92 FECPHCPYRSKRKDTLDRHMKI 113
F C C R++ L RH +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS 24
Score = 22.6 bits (49), Expect = 3.3
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 63 YACDVCGKVYQHKQTLDRHKK 83
+ C+VC + + ++ L RH +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR 23
Score = 22.6 bits (49), Expect = 3.7
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 2 YACDVCGKEYQHKRTLYRHKK 22
+ C+VC + + + L RH +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR 23
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 24.0 bits (52), Expect = 1.5
Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 80 RHKKDECGQEPKFECPHCPYRSKRKDTLDRHMKI 113
R + + + ++C C L +H +
Sbjct: 2 RSEWQQRERRR-YKCDECGKSFSHSSDLSKHRRT 34
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.9 bits (51), Expect = 1.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 91 KFECPHCPYRSKRKDTLDRHMKIIH 115
KF CPHC RK L H++ H
Sbjct: 2 KFHCPHCDTVIARKSDLGVHLRKQH 26
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 23.6 bits (51), Expect = 2.0
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 89 EPKFECPHCPYRSKRKDTLDRHMKI 113
+ F C C K RH+K+
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKV 29
Score = 22.4 bits (48), Expect = 5.7
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 2 YACDVCGKEYQHKRTLYRHKK 22
+ C +C + K RH K
Sbjct: 8 FVCRICLSAFTTKANCARHLK 28
Score = 22.0 bits (47), Expect = 6.6
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 63 YACDVCGKVYQHKQTLDRHKK 83
+ C +C + K RH K
Sbjct: 8 FVCRICLSAFTTKANCARHLK 28
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 23.3 bits (51), Expect = 2.0
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 63 YACDVCGKVYQHKQTLDRHKK 83
+ C +C + + L H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR 24
Score = 23.0 bits (50), Expect = 2.6
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 92 FECPHCPYRSKRKDTLDRHMKI 113
F+C C R D L H++
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRT 25
Score = 23.0 bits (50), Expect = 2.7
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 2 YACDVCGKEYQHKRTLYRHKK 22
+ C +C + + L H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR 24
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 25.2 bits (55), Expect = 2.1
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 57 GNAHVMYACDVCGKVYQHKQTLDRHKKDECGQEPK 91
+ +Y D + + K+ +R++K + P
Sbjct: 29 TDEDFIYIDDFTLQYFGSKKQYERYRKKCTLRHPP 63
Score = 24.4 bits (53), Expect = 4.6
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 1 MYACDVCGKEYQHKRTLYRHKKDECGQEPK 30
+Y D + + K+ R++K + P
Sbjct: 34 IYIDDFTLQYFGSKKQYERYRKKCTLRHPP 63
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 24.8 bits (54), Expect = 2.9
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 57 GNAHVMYACDVCGKVYQHKQTLDRHKK 83
G ++ C+ C K +++++ H
Sbjct: 26 GKQPKLWLCEYCLKYMKYEKSYRFHLG 52
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 22.7 bits (48), Expect = 3.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 92 FECPHCPYRSKRKDTLDRHMKIIH 115
F+C +C + +K+ L +HMK H
Sbjct: 3 FKCNYCSFDTKQPSNLSKHMKKFH 26
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 22.5 bits (49), Expect = 3.8
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 63 YACDVCGKVYQHKQTLDRHKK 83
Y C CGK + L H++
Sbjct: 3 YKCLECGKAFSQNSGLINHQR 23
Score = 22.2 bits (48), Expect = 4.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 2 YACDVCGKEYQHKRTLYRHKK 22
Y C CGK + L H++
Sbjct: 3 YKCLECGKAFSQNSGLINHQR 23
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 22.7 bits (48), Expect = 4.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 89 EPKFECPHCPYRSKRKDTLDRHMK 112
E + CP C R KRKD + H++
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVR 24
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 22.8 bits (49), Expect = 4.2
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 92 FECPHCPYRSKRKDTLDRHMKI 113
F+CP C R D L H K
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKR 33
Score = 22.4 bits (48), Expect = 5.6
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 63 YACDVCGKVYQHKQTLDRHKK 83
+ C C + + L H+K
Sbjct: 12 FQCPDCDRSFSRSDHLALHRK 32
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 22.4 bits (47), Expect = 5.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 63 YACDVCGKVYQHKQTLDRHKKDECGQE 89
+ C CGK + + T+ RH + G +
Sbjct: 5 FVCSKCGKTFTRRNTMARHADNCAGPD 31
Score = 22.0 bits (46), Expect = 7.4
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 2 YACDVCGKEYQHKRTLYRHKKDECGQE 28
+ C CGK + + T+ RH + G +
Sbjct: 5 FVCSKCGKTFTRRNTMARHADNCAGPD 31
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 270
Score = 23.6 bits (51), Expect = 6.7
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 57 GNAHVMYACDVCGKVYQHKQTLDRHKK 83
+Y C+ C K + + L +H K
Sbjct: 26 SRLPKLYLCEFCLKYMKSRTILQQHMK 52
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 22.0 bits (46), Expect = 7.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 92 FECPHCPYRSKRKDTLDRHMKIIHFSD 118
++C +C +RS L H+K H +
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHSKE 29
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 21.5 bits (45), Expect = 9.0
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 28 EPKFGCPQCPYRSRQKATLNRHL 50
E F C CPY SR + L HL
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHL 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.475
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 457,113
Number of extensions: 19066
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 149
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (21.9 bits)