BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12029
(81 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 17 SYFADRLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHM 72
++ ++ + C C + + +KK L RHQ G++P Y CP C Q+ NL H
Sbjct: 43 THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAHQ 97
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 20 ADRLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHM 72
++ ++C C + + LA HQ G++P Y CP C K +L H
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRHQ 69
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 17 SYFADRLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHM 72
++ ++ ++C C + + L HQ G++P Y CP C ++ NL TH
Sbjct: 99 THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTHQ 153
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 17 SYFADRLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHM 72
++ ++ + C C + + + +L HQ G++P Y CP C Q +L H
Sbjct: 71 THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAHQ 125
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 10 YFQITESSYFADRLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLM 69
+ + + ++ ++ + C C + + + +L HQ G++P Y CP C ++ L
Sbjct: 120 HLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALN 178
Query: 70 THM 72
H
Sbjct: 179 VHQ 181
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSI 74
D+ + C C ++ K +LA H+T G++P Y C +C + + NL TH I
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRI 67
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 24 FSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHM 72
+C C +++++ L RH+ G++P Y CP+C R K+K + H+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHV 55
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 20 ADRLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSIKHS 77
++++F+CS C ++ + L H G+ P Y C C + QK +L +HM HS
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 4 QLLVPFYFQITESSYFADRLFSCSGCARVYKNKKSLARHQTYEC--GQEPQYFCPLCPYR 61
+ L +Y ++ + ++ F C C + Y K++L H+ C E + C +C
Sbjct: 16 KFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQET 75
Query: 62 AKQKTNLMTHM 72
+++ L HM
Sbjct: 76 FRRRMELRLHM 86
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 26 CSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSIKH 76
CS C + +++ L H G++P Y C C Y A QKT+L H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 20 ADRLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSI 74
++R F C+ C + Y++ L+RH+ G P+ CP C + ++ + H+ +
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRS-CPECGKCFRDQSEVNRHLKV 54
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHM 72
++ + C C + + +L +HQ G++P Y CP C Q ++L H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKP-YKCPECGKSFSQSSDLQKHQ 52
Score = 28.5 bits (62), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 11 FQITESSYFADRLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLC 58
Q + ++ ++ + C C + + L +HQ G++P Y CP C
Sbjct: 20 LQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP-YKCPEC 66
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 53 YFCPLCPYRAKQKTNLMTHMSIKHS 77
Y C C YR+ +NL TH+ KHS
Sbjct: 3 YQCQYCEYRSADSSNLKTHIKTKHS 27
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
Length = 66
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 20 ADRLFSCSGCARVYKNKKSLARHQTYECGQEPQ-YFCPLCPYRAKQKTNLMTHMSIKH 76
+ + C C+RVY + + RH + + Y CP C +K N+ H+ I H
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 22 RLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSI 74
R + C C + + + L++H+ G++P Y C C Q+++L+ H +
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGHHRV 68
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 17 SYFADRLFSCS--GCARVYKNKKSLARHQTYECGQEPQYFC--PLCPYRAKQKTNLMTHM 72
S+ ++ + C GC++ + N A+HQ E Y C P C R ++L H+
Sbjct: 91 SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Query: 73 SIKHS 77
H
Sbjct: 151 KTVHG 155
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 22 RLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSIKHS 77
R + C C + + K + +H G++P + C +C Q +NL+TH S KH+
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAFSQSSNLITH-SRKHT 81
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 24 FSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSI 74
F C C + +K +L+ H P Y C C R QK+++ H I
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFI 51
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSI 74
++ + C C + + L +HQ G++P Y C C Q + L+ H I
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINHQRI 64
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 53 YFCPLCPYRAKQKTNLMTHMSIKHS 77
Y C C +R+ +NL TH+ KHS
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHS 27
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEP 51
++ + C C +V++ LARHQ G++P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain
Bound To The Adeno-Associated Virus P5 Initiator
Element
Length = 124
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 22 RLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPL--CPYRAKQKTNLMTHMSI 74
R+ C+ C + + L RHQ G++P + C C R NL TH+ I
Sbjct: 33 RVHVCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTHVRI 86
>pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
Length = 349
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 18 YFADRLFSCSGCARVYKNK 36
+ ADRL C GC++V+ +K
Sbjct: 286 FVADRLLECLGCSKVFHSK 304
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEP 51
++ + C+ C +V+++ L+RHQ G++P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEP 51
+ F CS C +V+ +K +L HQ G+ P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 28 GCARVYKNKKSLARHQTYECGQEPQYFC--PLCPYRAKQKTNLMTHMSI 74
GC R++ N++ L H+ Y+ + + C P C K +L HM +
Sbjct: 14 GCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 26 CSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSI 74
C C + + K L H G +P Y C C Y A ++L H+ I
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRI 58
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 53 YFCPLCPYRAKQKTNLMTHMSIKHS 77
Y C C R+ +NL TH+ KHS
Sbjct: 3 YQCQYCEXRSADSSNLKTHIKTKHS 27
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 53 YFCPLCPYRAKQKTNLMTHMSIKHS 77
Y C C R+ +NL TH+ KHS
Sbjct: 3 YQCQYCELRSADSSNLKTHIKTKHS 27
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEP 51
+R + CS C + + K +L HQ G++P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 24 FSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSIKHSHYQG 81
F C C R + ++ L RH ++P Y C LC ++ L+ H HS G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEP 51
++ + C+ C + ++ + SLA HQ G++P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEP 51
+R + C+ C + + ++ +L +HQ G++P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEP 51
++ + C+ C +V+ LARH+ G++P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 24 FSCSGCARVYKNKKSLARHQTYECGQEP 51
F C+ C + + K +L+ HQ G++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 22 RLFSCSGCARVYKNKKSLARHQTYECGQEP 51
+LF C+ C + + SL HQ G++P
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 50 EPQYFCPL--CPYRAKQKTNLMTHMSI 74
E Y CP+ C R QKTNL TH+ I
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRI 28
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 50 EPQYFCPL--CPYRAKQKTNLMTHMSI 74
E Y CP+ C R QKTNL TH+ I
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRI 28
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEP 51
++ + C+ C + + LARHQ G++P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 21 DRLFSC--SGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHM 72
+R ++C C R + + +L RH GQ+P + C +C + +L TH+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEP 51
++ + CS C + + +++SL+ HQ G++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEP 51
++ F CS C + + K +L HQ G++P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 36 KKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSIKHSHYQG 81
K +L H+ C P + C C + KQ +NL HM H G
Sbjct: 22 KAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKKFHGDMSG 66
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 21 DRLFSC--SGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHM 72
+R ++C C R + SL RH GQ+P + C +C + +L TH+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEP 51
+R + CS C + + K +L+ HQ G++P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 22 RLFSCSGCARVYKNKKSLARHQTYECGQEP 51
+ + C+ C +V+ LARH+ G++P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 6 LVPFYFQITESSYFADRLFSCSGCARVYKNKKSLARH 42
L+ +F+ F F CS C + + + ++ARH
Sbjct: 30 LLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEP 51
++ + C C++ + K LA+HQ G++P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 22 RLFSCSGCARVYKNKKSLARHQTYECGQEP 51
+ + C+ C + + LARHQ G++P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 16 SSYFADRLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMS 73
S + R + C C + +K K L H G +P Y C +C R + + H++
Sbjct: 30 SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSFHRHVT 86
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEP 51
++ + C+ C +V+ L++HQ G++P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 53 YFCPLCPYRAKQKTNLMTHMS 73
+ C LC Y + K+NL HM+
Sbjct: 10 FKCSLCEYATRSKSNLKAHMN 30
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 14 TESSYFADRLFSCSGCARVYKNKKSLARHQTYECGQEP 51
+ SS + F C+ C + + + L++HQ G+ P
Sbjct: 3 SGSSGTKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 24 FSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSIKH 76
F C C R + L H G++P + C +C + + H I+H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDIQH 55
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.0 bits (53), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEP 51
++ + C+ C +V+ LARH+ G +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.135 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,240,470
Number of Sequences: 62578
Number of extensions: 64395
Number of successful extensions: 343
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 122
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)