RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12029
(81 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 38.9 bits (91), Expect = 7e-06
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 24 FSCSGCARVYKNKKSLARHQ---TYECGQEPQYFCPLCPYRAKQKTNLMTHMSIKHS 77
C C + K SL HQ + C C R ++ ++ H S H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHP 63
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 35.2 bits (82), Expect = 1e-04
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 24 FSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSI 74
CS C+ +K +L H+ C P + C C + KQ +NL HM
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKK 59
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 32.9 bits (76), Expect = 0.001
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 24 FSCSGCARVYKNKKSLARHQ-TYECGQEPQYFCPLCPYRAKQKTNLMTHMSIKH 76
+ C C+RVY + + RH T Y CP C +K N+ H+ I H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 31.8 bits (71), Expect = 0.009
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 24 FSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSIKHS 77
F C C + + SL +H Y E CP+C + + H+ KH+
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVCKKHN 125
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 30.1 bits (67), Expect = 0.024
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 53 YFCPLCPYRAKQKTNLMTHMSIKHSHYQ 80
Y C C ++ H+ +H +
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVV 46
Score = 29.4 bits (65), Expect = 0.057
Identities = 11/57 (19%), Positives = 15/57 (26%), Gaps = 3/57 (5%)
Query: 24 FSCSGCARVYKNKKSLARHQTYE---CGQEPQYFCPLCPYRAKQKTNLMTHMSIKHS 77
+ C C + H E Y C C + K+ L H H
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP 75
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 30.1 bits (67), Expect = 0.037
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 24 FSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSIKHSHYQ 80
+ + K+SL + E Q+ C C + + +L HM IK HYQ
Sbjct: 53 DNNNPKRWSKPRKRSLLEMEGKEDAQKV-LKCMYCGHSFESLQDLSVHM-IKTKHYQ 107
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 28.3 bits (64), Expect = 0.094
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 24 FSCSGCARVYKNKKSLARHQ---TYECGQEPQYFCPLCPYRAKQKTNLMTHMSIKHS 77
+ C C + ++ H E ++ CP C +K++L H+ +HS
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTE--NVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 27.8 bits (61), Expect = 0.10
Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 26 CSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSI 74
C C K L +H P Y C C + K K NL HM
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKS 51
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 27.6 bits (60), Expect = 0.25
Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 24 FSCSGCARV-YKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSIKHSH 78
C C V K L +H + C C + K K L H +HS
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.5 bits (60), Expect = 0.25
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 24 FSCSGCARV-YKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSIKHSH 78
SC C V K + L +H C QE + C C + + + H+ H+
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHME-NCKQEM-FTCHHCGKQLRSLAGMKYHVMANHNS 88
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 25.6 bits (55), Expect = 0.58
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 53 YFCPLCPYRAKQKTNLMTHMSIKHS 77
Y C C +R+ +NL TH+ KHS
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHS 27
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 26.5 bits (59), Expect = 0.84
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 24 FSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRA--------KQKTNLMTHMSI 74
C R + L H T E P+ +C + K K L+ H+ +
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 26.5 bits (58), Expect = 1.0
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 8 PFYFQITESSY-FADRLFSCSGCARVYKNKKSLARHQTYECGQEP 51
P+YF D ++ + + +KK R++ + P
Sbjct: 20 PWYFSPYPIELTDEDFIYIDDFTLQYFGSKKQYERYRKKCTLRHP 64
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 1.0
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 53 YFCPLCPYRAKQKTNLMTHMSIKHS 77
Y CP C Y + K NL H+ KH+
Sbjct: 10 YKCPQCSYASAIKANLNVHLR-KHT 33
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 25.4 bits (55), Expect = 1.1
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 18 YFADRLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSIK 75
+ DR CS C ++ + +L+R +T C + + C Q+ L +
Sbjct: 13 HLGDRSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSC--------QEAALNKDEGNE 62
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 25.9 bits (56), Expect = 1.3
Identities = 5/44 (11%), Positives = 11/44 (25%)
Query: 4 QLLVPFYFQITESSYFADRLFSCSGCARVYKNKKSLARHQTYEC 47
+L I + ++ +V N + L
Sbjct: 189 RLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 26.0 bits (56), Expect = 1.5
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 24 FSCSGCARVYKNKKSLARHQT 44
+ C C+ V + L H
Sbjct: 181 YQCHVCSAVLFSPLDLDAHVA 201
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 25.1 bits (56), Expect = 1.8
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 26 CSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSI 74
C C + SL +H + P + C +CPY ++ + L H+
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVHLRS 86
Score = 23.5 bits (52), Expect = 5.9
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 26 CSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSI 74
C C + + K L H G +P Y C C Y A ++L H+ I
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRI 58
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 25.7 bits (57), Expect = 1.9
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 50 EPQYFCPLCPYRAKQKTNLMTHMS-IKHSHYQG 81
EP C C + + K NL ++ G
Sbjct: 91 EPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDG 123
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 24.8 bits (55), Expect = 1.9
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 24 FSCSGCARVYKNKKSLARHQ---TYECGQEPQYFCPLCPYRAKQKTNLMTHMSI 74
++CS C + ++ K+ L H + C C ++ + H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.1 bits (51), Expect = 2.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 53 YFCPLCPYRAKQKTNLMTHMS 73
+ C LC Y + K+NL HM+
Sbjct: 10 FKCSLCEYATRSKSNLKAHMN 30
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 24.0 bits (52), Expect = 2.3
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 15 ESSYFADRLFSCSGCARVYKNKKSLARHQTYECGQEPQ 52
SS + F CS C RV+ + L +H+ +
Sbjct: 4 GSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 24.8 bits (55), Expect = 2.4
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 24 FSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSIKHSH 78
C C + + +K L H G++P + CP C +K NL+ H + +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHEARNCMN 61
Score = 24.4 bits (54), Expect = 3.6
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 24 FSCSGCARVYKNKKSLARHQTYEC---GQEPQYFCPLCPYRAKQKTNLMTHMSI 74
F C C + Y K++L H+ C ++ + C +C +++ L HM
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVCQETFRRRMELRLHMVS 88
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 24.5 bits (53), Expect = 2.6
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 8/57 (14%)
Query: 24 FSCSGCARVYKNKKSLARHQTYE---CGQEPQYFC--PLCPYRAK---QKTNLMTHM 72
C R + L H T E ++ + C CP K K L+ H+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 24.9 bits (53), Expect = 2.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQ 43
+ +C C R +K+ S+ RHQ
Sbjct: 67 YKKLTCLECMRTFKSSFSIWRHQ 89
Score = 24.1 bits (51), Expect = 4.7
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 22 RLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSIKHSH 78
C C+ + + + H++ + + C C K ++ H H+
Sbjct: 41 NAAVCPYCSLRFFSPELKQEHESKC--EYKKLTCLECMRTFKSSFSIWRHQVEVHNQ 95
Score = 24.1 bits (51), Expect = 5.2
Identities = 9/53 (16%), Positives = 13/53 (24%), Gaps = 3/53 (5%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMS 73
++ C C + H+ CP C R H S
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERL---CRNAAVCPYCSLRFFSPELKQEHES 63
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 24.2 bits (53), Expect = 2.7
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 24 FSCS--GCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHM 72
++C C R + L RH GQ+P + C +C + +L TH+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 23.7 bits (50), Expect = 3.4
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 16 SSYFADRLFSCSGCARVYKNKKSLARHQTYECGQ 49
SS A C C +++++ L HQ G+
Sbjct: 5 SSGAAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 24.4 bits (54), Expect = 3.5
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 24 FSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSI 74
+C C +++++ L RH+ G++P Y CP+C R K+K + H+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRS 57
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 24.3 bits (52), Expect = 4.5
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 24 FSCSGCARVYKNKKSLARHQ 43
C CAR + + +L H
Sbjct: 51 HRCLACARYFIDSTNLKTHF 70
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 23.2 bits (49), Expect = 4.7
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEPQ 52
D+ ++C C + YKN+ L+ H + E +
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSHLAEEE 36
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 23.0 bits (49), Expect = 6.3
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 22 RLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLC 58
+ +C C +++++ L RH+ G++P Y
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPS 46
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 22.8 bits (50), Expect = 7.3
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 22 RLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSIKHS 77
R F C C R + ++ L RH ++P Y C LC ++ L+ H HS
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIHS 55
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome
biogenesis, metal BIN protein; NMR {Pyrococcus
horikoshii}
Length = 165
Score = 23.7 bits (51), Expect = 8.4
Identities = 7/33 (21%), Positives = 8/33 (24%), Gaps = 13/33 (39%)
Query: 26 CSGCARVYKNKKSLARHQTYECGQEPQYFCPLC 58
C GC R + CP C
Sbjct: 135 CIGCGRKFSTLPPG-------------GVCPDC 154
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 22.5 bits (47), Expect = 8.8
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 16 SSYFADRLFSCSGCARVYKNKKSLARHQTYECGQE 50
SS ++ C C ++ SL HQ GQ+
Sbjct: 5 SSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 22.4 bits (48), Expect = 9.0
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 22 RLFSCSGCARVYKNKKSLARHQT 44
R ++CS C R +++ ++L H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMN 27
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 23.9 bits (51), Expect = 9.5
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 18 YFADRL-FSCSGCARVYKNKKSLARHQTYECGQE 50
+F D FS V N +L H E G+
Sbjct: 1652 HFKDTYGFSILDI--VINNPVNLTIHFGGEKGKR 1683
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 21.9 bits (47), Expect = 9.8
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 22 RLFSCSGCARVYKNKKSLARHQ 43
R F C C R + ++ L RH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.135 0.435
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,148,457
Number of extensions: 49447
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 108
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.0 bits)