RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12029
(81 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 28.5 bits (63), Expect = 0.023
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSI 74
D+L+ C C + + +K RH + Y C +C + K K +L+ HM I
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHMKI 52
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 27.0 bits (59), Expect = 0.049
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 53 YFCPLCPYRAKQKTNLMTHMSIKHS 77
Y C C +R+ +NL TH+ KHS
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHS 27
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.5 bits (59), Expect = 0.081
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 53 YFCPLCPYRAKQKTNLMTHMSIKHS 77
Y C +C R Q + H+ KH+
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHT 33
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 26.7 bits (59), Expect = 0.082
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 40 ARHQTYECGQEPQYFCPLCPYRAKQKTNLMTHMSI 74
R + + + Y C C ++L H
Sbjct: 1 GRSEWQQRERRR-YKCDECGKSFSHSSDLSKHRRT 34
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 25.3 bits (56), Expect = 0.25
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 53 YFCPLCPYRAKQKTNLMTHMSIKHS 77
Y C C + +L H+ H+
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHT 30
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 24.6 bits (54), Expect = 0.37
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 50 EPQYFCPLCPYRAKQKTNLMTHMSIKH 76
E Y C C +QK L H H
Sbjct: 6 EKPYACSHCDKTFRQKQLLDMHFKRYH 32
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 24.2 bits (53), Expect = 0.51
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 53 YFCPLCPYRAKQKTNLMTHMSI 74
+ CP CP R + +L H+
Sbjct: 3 FACPECPKRFMRSDHLSKHIKT 24
>d2ffma1 d.267.1.1 (A:1-83) Hypothetical protein SAV1430
{Staphylococcus aureus [TaxId: 1280]}
Length = 83
Score = 25.2 bits (55), Expect = 0.56
Identities = 3/43 (6%), Positives = 12/43 (27%), Gaps = 4/43 (9%)
Query: 8 PFYFQITES--SYFADRLFSCSGCARVY--KNKKSLARHQTYE 46
+ + F + + G ++ + S+ +
Sbjct: 28 SDTYTKVDDSQPAFINDILKVEGVKSIFHVMDFISVDKENDAN 70
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 24.1 bits (53), Expect = 0.66
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 53 YFCPLCPYRAKQKTNLMTHMSI 74
Y C C + + L+ H +
Sbjct: 8 YGCVECGKAFSRSSILVQHQRV 29
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 23.4 bits (51), Expect = 1.0
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 53 YFCPLCPYRAKQKTNLMTHMSI 74
+ C +C ++ +L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS 24
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 23.5 bits (50), Expect = 1.2
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 24 FSCSGCARVYKNKKSLARH 42
F CS C + + + ++ARH
Sbjct: 5 FVCSKCGKTFTRRNTMARH 23
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 24.8 bits (54), Expect = 1.3
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 20 ADRLFSCSGCARVYKNKKSLARHQTYECGQEP 51
D ++ + + +KK R++ + P
Sbjct: 31 EDFIYIDDFTLQYFGSKKQYERYRKKCTLRHP 62
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 23.2 bits (50), Expect = 1.5
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 50 EPQYFCPLCPYRAKQKTNLMTHMSI 74
+ + C +C K N H+ +
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKV 29
>d1gqaa_ a.24.3.2 (A:) Cytochrome c' {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 130
Score = 24.2 bits (52), Expect = 1.8
Identities = 3/13 (23%), Positives = 7/13 (53%)
Query: 25 SCSGCARVYKNKK 37
+C C ++ K+
Sbjct: 118 TCKSCHDDFRVKR 130
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 22.2 bits (48), Expect = 3.4
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 53 YFCPLCPYRAKQKTNLMTHMSI 74
+ C +C + +L TH+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRT 25
>d1s05a_ a.24.3.2 (A:) Cytochrome c-556 {Rhodopseudomonas palustris
[TaxId: 1076]}
Length = 129
Score = 23.4 bits (50), Expect = 3.5
Identities = 3/13 (23%), Positives = 8/13 (61%)
Query: 25 SCSGCARVYKNKK 37
+C C +++K+
Sbjct: 116 ACGNCHENFRDKE 128
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 23.2 bits (50), Expect = 4.1
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 20 ADRLFSCSGCARVYKNKKSLARHQ 43
+L+ C C + K +KS H
Sbjct: 28 QPKLWLCEYCLKYMKYEKSYRFHL 51
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 22.7 bits (49), Expect = 4.2
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 24 FSCSGCARVYKNKKSLARHQ 43
C CAR + + +L H
Sbjct: 16 HRCLACARYFIDSTNLKTHF 35
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 21.9 bits (46), Expect = 4.4
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 50 EPQYFCPLCPYRAKQKTNLMTHM 72
E + C +CPY ++ + L H+
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHL 23
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 21.5 bits (45), Expect = 4.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 53 YFCPLCPYRAKQKTNLMTHMSIKH 76
Y CP C +K N+ H+ I H
Sbjct: 2 YPCPFCFKEFTRKDNMTAHVKIIH 25
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 270
Score = 22.9 bits (49), Expect = 5.4
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 21 DRLFSCSGCARVYKNKKSLARHQ 43
+L+ C C + K++ L +H
Sbjct: 29 PKLYLCEFCLKYMKSRTILQQHM 51
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 21.5 bits (45), Expect = 6.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 55 CPLCPYRAKQKTNLMTHMSIKH 76
C C + KQ +NL HM H
Sbjct: 5 CNYCSFDTKQPSNLSKHMKKFH 26
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 28
Score = 21.2 bits (44), Expect = 7.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 24 FSCSGCARVYKNKKSLARHQTYEC 47
F C C + Y K++L H+ C
Sbjct: 2 FECPKCGKCYFRKENLLEHEARNC 25
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor,
different fingers {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 36
Score = 21.2 bits (44), Expect = 8.0
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 24 FSCSGCARVYKNKKSLARHQTYEC 47
F C C + + +L HQ Y C
Sbjct: 9 FMCLPCGIAFSSPSTLEAHQAYYC 32
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 21.2 bits (45), Expect = 8.4
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 53 YFCPLCPYRAKQKTNLMTHMSI 74
+ CP C + +L H
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKR 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.135 0.435
Gapped
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 289,449
Number of extensions: 10407
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 59
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.5 bits)