BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12030
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 92 ECGQEPKYQCPQCKDSFFS---WSAFHKNLSGM--FACDVCGKEYKYKRGLYRHKKFECG 146
E G++P Y CP+C SF + + +G + C CGK + K+ L RH++ G
Sbjct: 16 EPGEKP-YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 147 QEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEP 204
++P Y+CP C +ANL+ H G +AC CGK + L H+R G++P
Sbjct: 75 EKP-YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP 133
Query: 205 KYQCPHCPHKAKHKANLKTH 224
Y+CP C + NL TH
Sbjct: 134 -YKCPECGKSFSREDNLHTH 152
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 10/151 (6%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFS---WSAFHKNLSGM--F 122
K + C CGK + L H++ G++P Y+CP+C SF + + +G +
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRHQRTHTGEKPY 78
Query: 123 ACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACN 180
C CGK + + L H++ G++P Y CP C A+L+ H G + C
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 181 VCGKGYRYKTGLYRHKREECGQEPKYQCPHC 211
CGK + + L+ H+R G++P Y+CP C
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKP-YKCPEC 167
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 9/142 (6%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSF---FSWSAFHKNLSGM--F 122
K ++C CGK + K+ L RH++ G++P Y+CP+C SF + A + +G +
Sbjct: 48 KPYKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAHQRTHTGEKPY 106
Query: 123 ACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACN 180
AC CGK + L H++ G++P Y+CP C + NL TH G + C
Sbjct: 107 ACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTHQRTHTGEKPYKCP 165
Query: 181 VCGKGYRYKTGLYRHKREECGQ 202
CGK + + L H+R G+
Sbjct: 166 ECGKSFSRRDALNVHQRTHTGK 187
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 119 SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQL---- 174
S C C K++ K L H + G++P ++CP C K NL H A
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 175 -GVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHS 230
VF C+VC + +R + L H G+ P Y+C C + K +L++H+ HS
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 67 SKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAF--HKNLSGM--- 121
S G EC C K++ K L H + G++P ++CP+C +F H+ + M
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 122 ---FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHI 170
F C VC + ++ + L H G+ P Y+C C + K +L++H+
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHM 114
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FAC 179
F C +CGK +K L H P Y C +C R K+++K H G C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 180 NVCGKGYRYKTGLYRHKREECG 201
VCGK + + L H R+ G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 25/107 (23%)
Query: 69 GFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCG 128
F+C++CGK +K L H P + C CG
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRP------------------------YPCQYCG 36
Query: 129 KEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG 175
K + K + +H G++P ++C C +NL TH G
Sbjct: 37 KRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 151 YQCPHCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
+ C C K + L TH+ + C CGK + K+ + +H G++P ++C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKC 60
Query: 209 PHCPHKAKHKANLKTH 224
C +NL TH
Sbjct: 61 QVCGKAFSQSSNLITH 76
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 62 LVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSF 108
L+ ++ + CQ CGKR+ K + +H G++P ++C C +F
Sbjct: 22 LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAF 67
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAI 227
F C +CGK ++ + L H P Y C +C + K+++K H I
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFI 51
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 119 SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV-- 176
S AC++CGK ++ L RHK G++P Y CP C R K K + H+ G
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 177 --FACNVCGKGYRYKTGLYRHKRE 198
+ C CGKG+ L H ++
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 67 SKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSF-------FSWSAFHKNLS 119
S G C++CGK ++ L+RHK G++P Y CP C F + + ++
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 120 GMFACDVCGKEYKYKRGLYRHKK 142
+ C CGK + L H K
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIK 86
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHI 225
AC +CGK +R L RHK G++P Y CP C + K K + H+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHV 55
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FAC 179
+ C CGK + L +H++ G++P Y+CP C ++L+ H G + C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKP-YKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 180 NVCGKGYRYKTGLYRHKR 197
CGK + L RH+R
Sbjct: 64 PECGKSFSRSDHLSRHQR 81
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNL-----SGMF 122
K ++C CGK + L +H++ G++P Y+CP+C SF S K+ +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKP-YKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 123 ACDVCGKEYKYKRGLYRHKK 142
C CGK + L RH++
Sbjct: 62 KCPECGKSFSRSDHLSRHQR 81
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 148 EPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYRHKREECGQEPK 205
E Y+CP C +NL+ H G + C CGK + + L +H+R G++P
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP- 60
Query: 206 YQCPHC 211
Y+CP C
Sbjct: 61 YKCPEC 66
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 96 EPKYQCPQCKDSFFSWSAFHKNL-----SGMFACDVCGKEYKYKRGLYRHKKFECGQEPK 150
E Y+CP+C SF S K+ + C CGK + L +H++ G++P
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP- 60
Query: 151 YQCPHC 156
Y+CP C
Sbjct: 61 YKCPEC 66
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILP- 235
+ C CGK + + L +H+R G++P Y+CP C ++L+ H ++
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKP-YKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 236 PQEGRVWTRA 245
P+ G+ ++R+
Sbjct: 64 PECGKSFSRS 73
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 148 EPKYQCP--HCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYRHKREECGQE 203
E Y CP C R K NL THI G F C +C + + TGL +H R G++
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 204 PKYQCPHCPHK--AKHKANLKTHIAIKHSD 231
P + C C K H + T I ++ D
Sbjct: 62 P-FACDICGRKFATLHTRDRHTKIHLRQKD 90
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 73 QVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGM-----FACDVC 127
+ C +R+ K L H + GQ+P +QC C +F + ++++ FACD+C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDIC 68
Query: 128 GKEYKYKRGLYRHKKFECGQE 148
G+++ RH K Q+
Sbjct: 69 GRKFATLHTRDRHTKIHLRQK 89
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 122 FACDV--CGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--F 177
+AC V C + + L RH + GQ+P +QC C +L THI G F
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 178 ACNVCGKGYRYKTGLYRH 195
AC++CG+ + RH
Sbjct: 64 ACDICGRKFARSDERKRH 81
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 73 QVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGM-----FACDVC 127
+ C +R+ L RH + GQ+P +QC C +F ++ FACD+C
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 128 GKEYKYKRGLYRHKKFECGQE 148
G+++ RH K Q+
Sbjct: 69 GRKFARSDERKRHTKIHLRQK 89
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 148 EPKYQCP--HCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYRHKREECGQE 203
E Y CP C R +NL HI G F C +C + + L H R G++
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 204 PKYQCPHCPHKAKHKANLKTHIAI 227
P + C C K K H I
Sbjct: 62 P-FACDICGRKFARSDERKRHTKI 84
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 122 FACDV--CGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--F 177
+AC V C + + L RH + GQ+P +QC C +L THI G F
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 178 ACNVCGKGYRYKTGLYRH 195
AC++CG+ + RH
Sbjct: 64 ACDICGRKFARSDERKRH 81
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 73 QVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGM-----FACDVC 127
+ C +R+ L RH + GQ+P +QC C +F ++ FACD+C
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 128 GKEYKYKRGLYRHKKFECGQE 148
G+++ RH K Q+
Sbjct: 69 GRKFARSDERKRHTKIHLRQK 89
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 148 EPKYQCP--HCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYRHKREECGQE 203
E Y CP C R A+L HI G F C +C + + L H R G++
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 204 PKYQCPHCPHKAKHKANLKTHIAI 227
P + C C K K H I
Sbjct: 62 P-FACDICGRKFARSDERKRHTKI 84
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAI 227
F CN CGK YR +GL RH+R G P+ CP C + ++ + H+ +
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPR-SCPECGKCFRDQSEVNRHLKV 54
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 70 FECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNL 118
F C CGK Y+ GL RH++ G P+ CP+C F S +++L
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPR-SCPECGKCFRDQSEVNRHL 52
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHI 170
F C+ CGK Y+ GL RH++ G P+ CP C + ++ + H+
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPR-SCPECGKCFRDQSEVNRHL 52
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 122 FACDV--CGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--F 177
+AC V C + + L RH + GQ+P +QC C +L THI G F
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 178 ACNVCGKGYRYKTGLYRH 195
AC++CG+ + RH
Sbjct: 64 ACDICGRKFARSDERKRH 81
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 73 QVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGM-----FACDVC 127
+ C +R+ L RH + GQ+P +QC C +F ++ FACD+C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 128 GKEYKYKRGLYRHKKFECGQE 148
G+++ RH K Q+
Sbjct: 69 GRKFARSDERKRHTKIHLRQK 89
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 148 EPKYQCP--HCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYRHKREECGQE 203
E Y CP C R +L HI G F C +C + + L H R G++
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 204 PKYQCPHCPHKAKHKANLKTHIAI 227
P + C C K K H I
Sbjct: 62 P-FACDICGRKFARSDERKRHTKI 84
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 73 QVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGM-----FACDVC 127
+ C +R+ K L H + GQ+P +QC C +F ++ + ++ FACD+C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQQASLNAHIRTHTGEKPFACDIC 68
Query: 128 GKEYKYKRGLYRHKKFECGQE 148
G+++ RH K Q+
Sbjct: 69 GRKFATLHTRTRHTKIHLRQK 89
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 148 EPKYQCP--HCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYRHKREECGQE 203
E Y CP C R K NL THI G F C +C + + + L H R G++
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 204 PKYQCPHCPHK--AKHKANLKTHIAIKHSD 231
P + C C K H T I ++ D
Sbjct: 62 P-FACDICGRKFATLHTRTRHTKIHLRQKD 90
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 119 SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTH--IAPQLGV 176
SG C+VCGK + K L H + G +P Y+C C + A ++L H I
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQE 203
F C +C R + L H R G
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDS 91
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 175 GVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSD 231
G C VCGK + K L H R G +P Y+C C + A ++L H+ I HSD
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRI-HSD 61
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 146 GQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYRHKREECGQE 203
G ++C C K LKTH+ GV + C C + L +H R +
Sbjct: 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER 63
Query: 204 PKYQCPHCPHKAKHKANLKTHI 225
P ++C CP+ +++ + L H+
Sbjct: 64 P-FKCQICPYASRNSSQLTVHL 84
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 25/105 (23%)
Query: 71 ECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKE 130
+C+VCGK + K L H + G +P Y+C C + S+ +K+L
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHL------------ 56
Query: 131 YKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG 175
+ + P ++C CP+ +++ + L H+ G
Sbjct: 57 -----------RIHSDERP-FKCQICPYASRNSSQLTVHLRSHTG 89
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAI 227
+ C+ C +RYK L HK G++P Y+C C + ANLKTH I
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRI 67
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHI 170
+ CD C ++YK L HK G++P Y+C C + ANLKTH
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHT 65
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 151 YQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEP 204
Y+C C ++K NL +H G + CN+CG + L H R G++P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 24/83 (28%)
Query: 67 SKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDV 126
K ++C C ++YK L HK G++P + C++
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKP------------------------YRCNI 50
Query: 127 CGKEYKYKRGLYRHKKFECGQEP 149
CG ++ L H + G++P
Sbjct: 51 CGAQFNRPANLKTHTRIHSGEKP 73
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 73 QVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGM-----FACDVC 127
+ C +R+ L RH + GQ+P +QC C +F ++ FACD+C
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 128 GKEYKYKRGLYRHKKFECGQE 148
G+++ RH K Q+
Sbjct: 69 GRKFARSDERKRHTKIHLRQK 89
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 148 EPKYQCP--HCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYRHKREECGQE 203
E Y CP C R A L HI G F C +C + + L H R G++
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 204 PKYQCPHCPHKAKHKANLKTHIAI 227
P + C C K K H I
Sbjct: 62 P-FACDICGRKFARSDERKRHTKI 84
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 73 QVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGM-----FACDVC 127
+ C +R+ L RH + GQ+P +QC C +F ++ FACD+C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 128 GKEYKYKRGLYRHKKFECGQE 148
G+++ RH K Q+
Sbjct: 69 GRKFARSDERKRHTKIHLRQK 89
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 148 EPKYQCP--HCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYRHKREECGQE 203
E Y CP C R L HI G F C +C + + L H R G++
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 204 PKYQCPHCPHKAKHKANLKTHIAI 227
P + C C K K H I
Sbjct: 62 P-FACDICGRKFARSDERKRHTKI 84
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 73 QVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGM-----FACDVC 127
+ C +R+ L RH + GQ+P +QC C +F ++ FACD+C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 67
Query: 128 GKEYKYKRGLYRHKKFECGQ 147
G+++ RH K Q
Sbjct: 68 GRKFARSDERKRHTKIHLRQ 87
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 148 EPKYQCP--HCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYRHKREECGQE 203
E Y CP C R L HI G F C +C + + L H R G++
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 204 PKYQCPHCPHKAKHKANLKTHIAI 227
P + C C K K H I
Sbjct: 61 P-FACDICGRKFARSDERKRHTKI 83
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 73 QVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGM-----FACDVC 127
+ C +R+ L RH + GQ+P +QC C +F ++ FACD+C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 128 GKEYKYKRGLYRHKKF 143
G+++ RH K
Sbjct: 69 GRKFARSDERKRHTKI 84
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 148 EPKYQCP--HCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYRHKREECGQE 203
E Y CP C R L HI G F C +C + + L H R G++
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 204 PKYQCPHCPHKAKHKANLKTHIAI 227
P + C C K K H I
Sbjct: 62 P-FACDICGRKFARSDERKRHTKI 84
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 148 EPK-YQCPH--CPHRAKHKANLKTHI---APQLGVFACNVCGKGYRYKTGLYRHKREECG 201
EP+ CPH C + + ++ H+ P++ V C CGK + + L RH+ G
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHV--CAECGKAFVESSKLKRHQLVHTG 59
Query: 202 QEPKYQCPH--CPHKAKHKANLKTHIAIKHSDR 232
++P +QC C + NL+TH+ I DR
Sbjct: 60 EKP-FQCTFEGCGKRFSLDFNLRTHVRIHTGDR 91
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 49/139 (35%), Gaps = 35/139 (25%)
Query: 96 EPK-YQCPQ--CKDSFFSWSAFHKNLSG----MFACDVCGKEYKYKRGLYRHKKFECGQE 148
EP+ CP C F SA K+L + C CGK + L RH+ G++
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 149 PKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
P +QC CGK + L H R G P Y C
Sbjct: 62 P-FQC------------------------TFEGCGKRFSLDFNLRTHVRIHTGDRP-YVC 95
Query: 209 PH--CPHKAKHKANLKTHI 225
P C K NLK+HI
Sbjct: 96 PFDGCNKKFAQSTNLKSHI 114
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 25/101 (24%)
Query: 72 CQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEY 131
C CGK + L RH+ G++P +QC + CGK +
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKP-FQC---------------------TFEGCGKRF 74
Query: 132 KYKRGLYRHKKFECGQEPKYQCPH--CPHRAKHKANLKTHI 170
L H + G P Y CP C + NLK+HI
Sbjct: 75 SLDFNLRTHVRIHTGDRP-YVCPFDGCNKKFAQSTNLKSHI 114
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 70 FECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLS 119
+ C VCGK++K K L H + G +P Y+C C F +FH++++
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSFHRHVT 86
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 103 QCKDSFFSWSAFHKNLS---GM--FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCP 157
QC SF S +++S G+ + C VCGK++K K L H K G +P Y+C C
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICA 72
Query: 158 HRAKHKANLKTHIA 171
R + + H+
Sbjct: 73 KRFMWRDSFHRHVT 86
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 156 CPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPH 213
C HK+ H++ LG+ + C VCGK ++ K L H + G +P Y+C C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAK 73
Query: 214 KAKHKANLKTHIA 226
+ + + H+
Sbjct: 74 RFMWRDSFHRHVT 86
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKH 229
C+ CGK +R L H R G++P Y+C C + A K +L+ H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 206 YQCPHCPHKAKHKANLKTHIAIKHS 230
YQC +C +++ +NLKTHI KHS
Sbjct: 3 YQCQYCEYRSADSSNLKTHIKTKHS 27
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 151 YQCPHCPHRAKHKANLKTHI 170
YQC +C +R+ +NLKTHI
Sbjct: 3 YQCQYCEYRSADSSNLKTHI 22
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 206 YQCPHCPHKAKHKANLKTHIAIKHS 230
YQC +C ++ +NLKTHI KHS
Sbjct: 3 YQCQYCEXRSADSSNLKTHIKTKHS 27
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 151 YQCPHCPHRAKHKANLKTHI 170
YQC +C R+ +NLKTHI
Sbjct: 3 YQCQYCEXRSADSSNLKTHI 22
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 206 YQCPHCPHKAKHKANLKTHIAIKHS 230
YQC +C ++ +NLKTHI KHS
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHS 27
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 151 YQCPHCPHRAKHKANLKTHI 170
YQC +C R+ +NLKTHI
Sbjct: 3 YQCQYCEFRSADSSNLKTHI 22
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEP 97
K +EC +CGK + K LH H+Q G++P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEP 149
+ C +CGK + K L+ H++ G++P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTH--IAPQLGVFAC 179
F C CG+ + L H++ + P Y C C + + +L+ H I + F C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 180 NVCGKGYRYKTGLYRHK 196
CGKG+ L HK
Sbjct: 77 QECGKGFCQSRTLAVHK 93
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 64 QQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWS 112
Q+ + ++C CGK + + L +H++ G++P Y+C +C +F S
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRS 60
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAI 227
+ C+ CGK + + + L +H+R G++P Y+C C +++L H +
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGHHRV 68
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHC 156
+ CD CGK + + L +H++ G++P Y+C C
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDEC 52
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 150 KYQCPHCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYRHKREECGQEP 204
+Y+C C H ++L H G + C+ CGK + ++ L H R G P
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPP 236
F C +C + + L H R G++P + C C K K H I+H ILP
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDIQH---ILPI 59
Query: 237 QEGRV 241
E +V
Sbjct: 60 LEDKV 64
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 24/77 (31%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVC 127
K F+C++C + + L H + G++P FACD+C
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP------------------------FACDIC 37
Query: 128 GKEYKYKRGLYRHKKFE 144
G+++ RH+ +
Sbjct: 38 GRKFARSDERKRHRDIQ 54
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 206 YQCPHCPHKAKHKANLKTHIAIKHS 230
YQC +C ++ +NLKTHI KHS
Sbjct: 3 YQCQYCELRSADSSNLKTHIKTKHS 27
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 151 YQCPHCPHRAKHKANLKTHI 170
YQC +C R+ +NLKTHI
Sbjct: 3 YQCQYCELRSADSSNLKTHI 22
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 127 CGKEYKYKRGLYRHKKFECGQEPKYQCP--HCPHRAKHKANLKTHIAPQLGV--FACNVC 182
C K Y L H + G++P YQC C R LK H GV F C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTC 72
Query: 183 GKGYRYKTGLYRHKREECGQEP 204
+ + L H R G++P
Sbjct: 73 QRKFSRSDHLKTHTRTHTGEKP 94
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 206 YQCPHCPHKAKHKANLKTHIAIKHS 230
YQC +C + +NLKTHI KHS
Sbjct: 3 YQCQYCEKRFADSSNLKTHIKTKHS 27
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEP 204
+ CN CGK +R+ + L RH+R G++P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEP 149
+ CDVCGKE+ L H++ G++P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEP 97
K F+C+ CGKR+ LH H++ G++P
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEP 204
+ CN CGK + K+ L RH+R G++P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEP 149
+ C VCGK + + L +H+K G++P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEP 204
+ C VCGK + ++ L +H++ G++P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEP 97
K F+C+ CGKR+ LH H++ G++P
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEP 204
+ C+VC K +RY + L H+R G++P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEP 149
+ CDVC K ++Y L H++ G++P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 122 FACDVCGKEYKYKRGLYRH 140
+ACD+CGK YK + GL H
Sbjct: 8 YACDICGKRYKNRPGLSYH 26
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 64 QQYSKGFECQVCGKRYKYKRGL-----HRHKQDECGQE 96
+ K + C +CGKRYK + GL H H +E G++
Sbjct: 2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGED 39
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 177 FACNVCGKGYRYKTGL-----YRHKREECGQEPKYQCPHCP 212
+AC++CGK Y+ + GL + H EE G++ + P P
Sbjct: 8 YACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKEDSQPPTP 48
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEP 97
K +EC VCGK + +++ L H++ G++P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEP 149
+ C VCGK + +++ L H++ G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEP 204
+ C+VCGK + ++ L H+R G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEP 149
F C CGK + +K L H+K G+ P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEP 204
F C+ CGK + +KT L H++ G+ P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEP 204
+ CN CGK + + L RH+R G++P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEP 149
+ CD CGK + L RH++ G++P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2CTD|A Chain A, Solution Structure Of Two Zf-C2h2 Domains From Human Zinc
Finger Protein 512
Length = 96
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 175 GVFACNVC-GKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRI 233
G +C C G + GL +H E C QE + C HC + + A +K H+ H+
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKH-MENCKQE-MFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Query: 234 LPPQEG 239
P G
Sbjct: 91 SGPSSG 96
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEP 204
+ CN CGK + + L RH+R G++P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHS 230
+ C CGK + + L +H+R G++P Y+C C + L H I S
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINHQRIHTS 67
>pdb|1X6F|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 462
Length = 88
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 202 QEPKYQCPHCPHKAKHKANLKTHIAI 227
Q YQC HC K + A L +H+ I
Sbjct: 22 QNSTYQCKHCDSKLQSTAELTSHLNI 47
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQ 95
K ++C CGK + K GLH H+Q G+
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPK-YQCPHCPHKAKHKANLKTHIAIKH 229
+ C VC + Y + + RH + K Y CP C + K N+ H+ I H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEP 204
+ CN CGK + K+ L H+R G++P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEP 204
CN CGK +R + L +H+R G++P
Sbjct: 11 LVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 152 QCPHCPHRAKHKANLKTHIAPQLG--VFACNV--CGKGYRYKTGLYRHKREECGQEP-KY 206
+CP K K L HI G F C CGK + L HKR G++P K
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 207 QCPHCPHKAKHKANLKTHIAIKHSDRILP 235
+ C + + ++ K H+ + SD+ P
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSDKSGP 152
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEP 204
+ CN CGK +R ++ L H+ G++P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEP 204
+ C CGK +R+ + L +H+R G++P
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKRE--ECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPP 236
C +CG R K L H+R+ E ++ C C + + ++ H + H +L P
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
Query: 237 QE 238
QE
Sbjct: 70 QE 71
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEP 204
F C CGKG+ + Y H+R G++P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEP 204
+ C+ CGK +R K+ L H R G++P
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEP 204
++CN CGK + +K+ L HK G +P
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQE 203
+ CN CGK +R K+ L H R G+
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGES 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,739,908
Number of Sequences: 62578
Number of extensions: 314694
Number of successful extensions: 1242
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 810
Number of HSP's gapped (non-prelim): 362
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)