RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12030
(245 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 47.8 bits (114), Expect = 7e-08
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 177 FACNVCGKGYRYKTGLYRHKR---EECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRI 233
C +CG R K L H+R E + C C + + ++ H + H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 234 LPPQE 238
L PQE
Sbjct: 67 LAPQE 71
Score = 40.9 bits (96), Expect = 2e-05
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Query: 148 EPKYQCPHCPHRAKHKANLKTHI---APQLGV--FACNVCGKGYRYKTGLYRHKREECGQ 202
QC C + KA+L H A + F C CGK + + H+ +
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS-KSHP 63
Query: 203 EPKYQCPHCPHKA 215
+
Sbjct: 64 ALLLAPQESSGPS 76
Score = 33.5 bits (77), Expect = 0.008
Identities = 13/93 (13%), Positives = 27/93 (29%), Gaps = 28/93 (30%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQ---DECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFAC 124
G +C++CG + K L+ H++ + F C
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALR------------------------FPC 41
Query: 125 DVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCP 157
+ CGK ++ + H+ +
Sbjct: 42 EFCGKRFEKPDSVAAHRS-KSHPALLLAPQESS 73
Score = 28.1 bits (63), Expect = 0.63
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSF 108
F C+ CGKR++ + H+ S
Sbjct: 37 LRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 48.2 bits (116), Expect = 3e-07
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNL---SGM--F 122
K ++C CGK + K+ L RH++ G++P Y+CP+C SF + + +G +
Sbjct: 48 KPYKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAHQRTHTGEKPY 106
Query: 123 ACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACN 180
AC CGK + L H++ G++P Y+CP C + NL TH G + C
Sbjct: 107 ACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTHQRTHTGEKPYKCP 165
Query: 181 VCGKGYRYKTGLYRHKR 197
CGK + + L H+R
Sbjct: 166 ECGKSFSRRDALNVHQR 182
Score = 45.9 bits (110), Expect = 2e-06
Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 28/159 (17%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVC 127
K + C CGK + L H++ G++P Y+CP+C
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPEC----------------------- 55
Query: 128 GKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACNVCGKG 185
GK + K+ L RH++ G++P Y+CP C +ANL+ H G +AC CGK
Sbjct: 56 GKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKS 114
Query: 186 YRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTH 224
+ L H+R G++P Y+CP C + NL TH
Sbjct: 115 FSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTH 152
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 46.3 bits (111), Expect = 5e-07
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG-----V 176
C C K++ K L H + G++P ++CP C K NL H A V
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTH 224
F C+VC + +R + L H G+ P Y+C C + K +L++H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSH 113
Score = 45.2 bits (108), Expect = 2e-06
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAF--HKNLSGM---- 121
G EC C K++ K L H + G++P ++CP+C +F H+ + M
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 122 --FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTH 169
F C VC + ++ + L H G+ P Y+C C + K +L++H
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSH 113
Score = 32.1 bits (74), Expect = 0.048
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDEC---GQEPKYQCPQCKDSFFSWSAFHKNL---SGM 121
K FEC CGK Y K L H+ C ++ + C C+++F ++ +G
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVCQETFRRRMELRLHMVSHTGE 92
Query: 122 --FACDVCGKEYKYKRGLYRHKK 142
+ C C +++ K+ L H
Sbjct: 93 MPYKCSSCSQQFMQKKDLQSHMI 115
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 42.9 bits (102), Expect = 2e-06
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPK-YQCPHCPHKAKHKANLKTHIAIKH 229
+ C VC + Y + + RH + K Y CP C + K N+ H+ I H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 35.2 bits (82), Expect = 0.001
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPK-YQCPHCPHRAKHKANLKTHI 170
+ C VC + Y + RH + K Y CP C K N+ H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 33.7 bits (78), Expect = 0.005
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPK-YQCPQCKDSF 108
+ C+VC + Y + RH + K Y CP C F
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEF 50
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 40.9 bits (97), Expect = 1e-05
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAI 227
C+ C K L H+R C P ++C +C K +NL H+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKK 59
Score = 35.9 bits (84), Expect = 0.001
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIA 171
C C K L H++ C P ++C +C K +NL H+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMK 58
Score = 31.7 bits (73), Expect = 0.025
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSF 108
+C C K L H++ C P ++C C
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDT 47
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 41.6 bits (99), Expect = 2e-05
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 124 CDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACNV 181
C+VCGK + K L H + G +P Y+C C + A ++L H+ F C +
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 182 CGKGYRYKTGLYRHKREECGQEPKYQC 208
C R + L H R G
Sbjct: 70 CPYASRNSSQLTVHLRSHTGDSG-PSS 95
Score = 35.1 bits (82), Expect = 0.003
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNL---SGM--F 122
+C+VCGK + K L H + G +P Y+C C + S+ +K+L S F
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 123 ACDVCGKEYKYKRGLYRHKKFECGQEPKYQC 153
C +C + L H + G
Sbjct: 66 KCQICPYASRNSSQLTVHLRSHTGDSG-PSS 95
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 41.0 bits (97), Expect = 2e-05
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPK-YQCPHCPHKAKHKANLKTHIAIKHS 230
+ C +C + + H ++ + + CPHC K++L H+ +HS
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
Score = 37.5 bits (88), Expect = 3e-04
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPK-YQCPHCPHRAKHKANLKTHI 170
+ C +C + + H + + + CPHC K++L H+
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Score = 33.3 bits (77), Expect = 0.010
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPK-YQCPQCKDSF 108
K +EC +C R+ + H + + + CP C
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI 55
Score = 27.5 bits (62), Expect = 1.2
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 192 LYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILP 235
R G++P Y+C C + +K HI KH++ +
Sbjct: 3 SGSSGRTHSGEKP-YECYICHARFTQSGTMKMHILQKHTENVAK 45
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 42.2 bits (98), Expect = 2e-05
Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 5/110 (4%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG-VFACN 180
V +E K L +K K H P + L +A + F C
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLI-HNPQLLDESSYLYRLLASKAISQFVCP 78
Query: 181 VCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHS 230
+C + L +H R E CP C + + H+ KH+
Sbjct: 79 LCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVCKKHN 125
Score = 30.7 bits (68), Expect = 0.17
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 8/108 (7%)
Query: 67 SKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC----KDSFFSWSAFHKNLSGMF 122
KG V + K L ++ K + S+ K F
Sbjct: 17 HKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKA-ISQF 75
Query: 123 ACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHI 170
C +C + L +H ++ E CP C + H+
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHV 120
Score = 27.6 bits (60), Expect = 2.5
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 48 NTNVLNAHGFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDS 107
N +L+ + L + F C +C + L +H + E CP CK
Sbjct: 53 NPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKE 109
Query: 108 F 108
F
Sbjct: 110 F 110
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 39.1 bits (90), Expect = 1e-04
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAP-QLGVFACN 180
+ C +C + H++ CP+C R + H + + C
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERL---CRNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCL 73
Query: 181 VCGKGYRYKTGLYRHKRE 198
C + ++ ++RH+ E
Sbjct: 74 ECMRTFKSSFSIWRHQVE 91
Score = 38.7 bits (89), Expect = 2e-04
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLS----GMFA 123
+ ++C++C + H++ CP C FFS ++ S
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHER---LCRNAAVCPYCSLRFFSPELKQEHESKCEYKKLT 71
Query: 124 CDVCGKEYKYKRGLYRHKK 142
C C + +K ++RH+
Sbjct: 72 CLECMRTFKSSFSIWRHQV 90
Score = 36.4 bits (83), Expect = 0.001
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 2/89 (2%)
Query: 151 YQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
YQC C + +H C C R+ + + + E + K C
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSL--RFFSPELKQEHESKCEYKKLTCLE 74
Query: 211 CPHKAKHKANLKTHIAIKHSDRILPPQEG 239
C K ++ H H+ + P G
Sbjct: 75 CMRTFKSSFSIWRHQVEVHNQNNMAPTSG 103
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 37.9 bits (87), Expect = 3e-04
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 173 QLGVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR 232
G +C C R + E C QE + C HC + + A +K H+ H+
Sbjct: 31 DKGSVSCPTCQAVGRKTIEGLKKHMENCKQEM-FTCHHCGKQLRSLAGMKYHVMANHNSL 89
Query: 233 ILPPQEG 239
P G
Sbjct: 90 PSGPSSG 96
Score = 31.4 bits (70), Expect = 0.080
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 120 GMFACDVCGK-EYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHI 170
G +C C K GL +H + C QE + C HC + + A +K H+
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHME-NCKQEM-FTCHHCGKQLRSLAGMKYHV 82
Score = 26.0 bits (56), Expect = 5.3
Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 90 QDECGQEPKYQCPQCKDSFFSWSAFHKN-----LSGMFACDVCGKEYKYKRGLYRHKKFE 144
E + CP C+ K MF C CGK+ + G+ H
Sbjct: 26 YLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMAN 85
Query: 145 CGQEP 149
P
Sbjct: 86 HNSLP 90
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 9e-04
Identities = 33/201 (16%), Positives = 54/201 (26%), Gaps = 50/201 (24%)
Query: 1 MDMSVSSTGQQYNKIMPVCLYAMFVE----KSTNTKMEFIAIRNSNVDKSLNT-NVLNAH 55
MD QY I+ V A FV+ K + I + +D + + + ++
Sbjct: 7 MDFETGEHQYQYKDILSVFEDA-FVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGT 64
Query: 56 GFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFH 115
W L+ + + + V E Y+ F S
Sbjct: 65 LRLFWTLLSKQEEMVQKFV-----------------EEVLRINYK--------FLMSPIK 99
Query: 116 KNLSGMFACDVCGKEYKYKRGLYRHKKFECGQE-PKYQCPHCPHRAKHKANLKTHIA--- 171
Y R + + Q KY R + L+ +
Sbjct: 100 TEQR-----QPSMMTRMYIE--QRDRLYNDNQVFAKYNVS----RLQPYLKLRQALLELR 148
Query: 172 PQLGVFACNVCGKGYRYKTGL 192
P V V G G KT +
Sbjct: 149 PAKNVLIDGVLGSG---KTWV 166
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 35.9 bits (84), Expect = 0.001
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FAC 179
F C +CGK +K L H P Y C +C R K+++K H G C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 180 NVCGKGYRYKTGLYRHKR 197
VCGK + + L H R
Sbjct: 61 QVCGKAFSQSSNLITHSR 78
Score = 28.5 bits (65), Expect = 0.50
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSF 108
+ + CQ CGKR+ K + +H G++P ++C C +F
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAF 67
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 36.3 bits (85), Expect = 0.001
Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 28/110 (25%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACNV 181
AC++CGK ++ L RHK G++P ++C V
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP---------------------------YSCPV 40
Query: 182 CGKGYRYKTGLYRHKREECGQEPK-YQCPHCPHKAKHKANLKTHIAIKHS 230
CG ++ K + H R G K Y C C +L HI HS
Sbjct: 41 CGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 35.9 bits (84), Expect = 0.002
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWS--AFHK-----NLSG 120
G C++CGK ++ L+RHK G++P Y CP C F ++H ++
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 121 MFACDVCGKEYKYKRGLYRHKK 142
+ C CGK + L H K
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIK 86
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 35.1 bits (80), Expect = 0.001
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAI 227
C CG + + L +H R P Y C +C K K NL H+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKS 51
Score = 32.4 bits (73), Expect = 0.015
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 150 KYQCPHCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYRHKREECG 201
KY C C R K + LK HI V + C C ++ K L +H + +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 31.6 bits (71), Expect = 0.023
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 70 FECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNL 118
+ C+ CG R K L +H + P Y C C SF + K++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHM 49
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 35.1 bits (82), Expect = 0.002
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTH 224
C+ C +RYK L HK G++P Y+C C + ANLKTH
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTH 64
Score = 29.7 bits (68), Expect = 0.17
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 137 LYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYR 194
+ H +P Y+C C ++K NL +H G + CN+CG + L
Sbjct: 5 HHHHSHMTHSDKP-YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 195 HKR 197
H R
Sbjct: 64 HTR 66
Score = 29.7 bits (68), Expect = 0.18
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSF 108
K ++C C ++YK L HK G++P Y+C C F
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQF 55
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 36.5 bits (85), Expect = 0.003
Identities = 27/147 (18%), Positives = 41/147 (27%), Gaps = 23/147 (15%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVC 127
+ C + + L H E P+ C C
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE---------------ECPRE 68
Query: 128 GKEYKYKRGLYRHKKFECGQEPKYQCPH--CPHRAKHKANLKTHIAPQLGV--FACNV-- 181
GK +K K L H + G++P + CP C NLK H G F C
Sbjct: 69 GKSFKAKYKLVNHIRVHTGEKP-FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG 127
Query: 182 CGKGYRYKTGLYRHKREECGQEPKYQC 208
C + + + +H +
Sbjct: 128 CDRRFANSSDRKKHMHVHTSDKS-GPS 153
Score = 28.8 bits (65), Expect = 1.1
Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 8/57 (14%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPK--------YQCPHCPHKAKHKANLKTHI 225
C + + L H E P+ +CP K K L HI
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Score = 28.0 bits (63), Expect = 2.0
Identities = 8/48 (16%), Positives = 13/48 (27%), Gaps = 1/48 (2%)
Query: 182 CGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKH 229
G + K + Q C L TH+ ++H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLS-RPKKSCDRTFSTMHELVTHVTMEH 49
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 35.1 bits (82), Expect = 0.003
Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FAC 179
F C CG+ + L H++ + P Y C C + + +L+ H F C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 180 NVCGKGYRYKTGLYRHKREECGQEPKYQC 208
CGKG+ L HK
Sbjct: 77 QECGKGFCQSRTLAVHKTLHMQTSS-PTA 104
Score = 33.6 bits (78), Expect = 0.012
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAF--HKNL-SGM--F 122
K F C+ CG+ + L H++ + P Y C C +F H+ + S F
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 123 ACDVCGKEYKYKRGLYRHKKFECGQEPKYQC 153
C CGK + R L HK
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLHMQTSS-PTA 104
Score = 32.4 bits (75), Expect = 0.033
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 136 GLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLY 193
G + ++ + C C NL H + C++C K +R + L
Sbjct: 4 GSSGGRLPSKTKKE-FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR 62
Query: 194 RHKREECGQEPKYQCPHCPHKAKHKANLKTH 224
H+ ++P ++C C L H
Sbjct: 63 DHRYIHSKEKP-FKCQECGKGFCQSRTLAVH 92
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 34.4 bits (80), Expect = 0.004
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 137 LYRHKKFECGQEPKYQCPHCPHRAKHKANL----KTHIAPQLGV--FACNVCGKGYRYKT 190
+ G++P Y C HC + K L K + P F C+ CGK + +
Sbjct: 3 SGSSGRTHTGEKP-YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 191 GLYRHKREECGQEPKYQCPHC 211
+ RH G + + +
Sbjct: 62 TMARHADNCAGPDG-VEGENS 81
Score = 34.0 bits (79), Expect = 0.006
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 177 FACNVCGKGYRYKTGLYRHKR----EECGQEPKYQCPHCPHKAKHKANLKTH 224
+AC+ C K +R K L H + + C C + + H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-FVCSKCGKTFTRRNTMARH 66
Score = 31.0 bits (71), Expect = 0.074
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 27/92 (29%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQ---DECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFAC 124
K + C C K ++ K+ L H + D + C +
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSK--------------------- 52
Query: 125 DVCGKEYKYKRGLYRHKKFECGQEPKYQCPHC 156
CGK + + + RH G + + +
Sbjct: 53 --CGKTFTRRNTMARHADNCAGPDG-VEGENS 81
Score = 30.2 bits (69), Expect = 0.13
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 64 QQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSF 108
F C CGK + + + RH + G + + S
Sbjct: 42 NFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG-VEGENSGPSS 85
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 34.3 bits (80), Expect = 0.007
Identities = 29/129 (22%), Positives = 43/129 (33%), Gaps = 34/129 (26%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVC 127
K + CQ CGK + +K RH G P + C VC
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRP------------------------YGCGVC 43
Query: 128 GKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHI----APQLGVFACNVCG 183
GK++K K L H K G +P Y+C C R + + H+ +
Sbjct: 44 GKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSFHRHVTSCTKS----YEAAKAE 98
Query: 184 KGYRYKTGL 192
+ +G
Sbjct: 99 QNTTEASGP 107
Score = 32.0 bits (74), Expect = 0.052
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHI 225
+ C VCGK ++ K L H + G +P Y+C C + + + H+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSFHRHV 85
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 35.3 bits (82), Expect = 0.008
Identities = 36/172 (20%), Positives = 55/172 (31%), Gaps = 42/172 (24%)
Query: 68 KGFECQV--CGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACD 125
K + C CG Y L H G++P + C +
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKP-FPCKEEG-------------------- 49
Query: 126 VCGKEYKYKRGLYRHKKFECGQEPKYQCPHCP---------HRAKHKANLKTHIAPQLGV 176
C K + L RH G++ + C + KH ++ V
Sbjct: 50 -CEKGFTSLHHLTRHSLTHTGEKN-FTCDSDGCDLRFTTKANMKKHF---NRFHNIKICV 104
Query: 177 FACNV--CGKGYRYKTGLYRHKREECGQEPKYQCPHCP-HKA-KHKANLKTH 224
+ C+ CGK ++ L H+ Q P Y+CPH K + LK H
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRH 155
Score = 31.8 bits (73), Expect = 0.11
Identities = 35/179 (19%), Positives = 51/179 (28%), Gaps = 44/179 (24%)
Query: 68 KGFEC--QVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACD 125
K F C + C K + L RH G++ + C
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN-FTCDSDG-------------------- 79
Query: 126 VCGKEYKYKRGLYRHKKFECGQEPK-YQC--PHCPHRAKHKANLKTHIA------PQLGV 176
C + K + +H + Y C +C K LK H P
Sbjct: 80 -CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLP---- 134
Query: 177 FACN--VCGKGYRYKTGLYRHKREECGQEPK--YQCPHCPHKAKHKANLKTHIAIKHSD 231
+ C C K + + L RH++ G K C K H+A H D
Sbjct: 135 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFV---GKTWTLYLKHVAECHQD 190
Score = 26.8 bits (60), Expect = 4.9
Identities = 24/111 (21%), Positives = 35/111 (31%), Gaps = 28/111 (25%)
Query: 127 CGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGY 186
CG Y L H G++P + C C KG+
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKP-FPCKEEG------------------------CEKGF 54
Query: 187 RYKTGLYRHKREECGQEPKYQC--PHCPHKAKHKANLKTHIAIKHSDRILP 235
L RH G++ + C C + KAN+K H H+ +I
Sbjct: 55 TSLHHLTRHSLTHTGEKN-FTCDSDGCDLRFTTKANMKKHFNRFHNIKICV 104
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 33.8 bits (76), Expect = 0.010
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 175 GVFACNVCGK-GYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRI 233
G C C + GL +H + +C HC + K KA L H +HS +
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Query: 234 LPPQ 237
+
Sbjct: 83 SDAE 86
Score = 29.9 bits (66), Expect = 0.27
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 120 GMFACDVCGK-EYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHI 170
G C C K GL +H + + +C HC + K KA L H
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHT 74
Score = 29.1 bits (64), Expect = 0.39
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 147 QEPKYQCPHCPH-RAKHKANLKTHIAPQ---LGVFACNVCGKGYRYKTGLYRHKREECGQ 202
+ + CP C K LK H+ C C K ++ K GL H E
Sbjct: 21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
Query: 203 EPK 205
+P
Sbjct: 81 KPS 83
Score = 27.6 bits (60), Expect = 1.5
Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Query: 90 QDECGQEPKYQCPQCKDSFFSWSAFHK-------NLSGMFACDVCGKEYKYKRGLYRHKK 142
Q + + CP C K L C C K++K K GL H
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Query: 143 FECGQEPK 150
E +P
Sbjct: 76 AEHSAKPS 83
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 32.5 bits (75), Expect = 0.014
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTH 224
F C VC + + + L RH R ++P Y C C + L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRH 49
Score = 28.6 bits (65), Expect = 0.27
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSF 108
+ F C+VC + + + L RH + ++P Y C C +F
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAF 40
Score = 25.9 bits (58), Expect = 2.7
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQ 90
K + C +C + + + L RH Q
Sbjct: 29 KPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 25.5 bits (57), Expect = 3.4
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTH 169
F C+VC + + + L RH + ++P Y C C + L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRH 49
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 32.8 bits (76), Expect = 0.016
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 122 FACDV--CGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--F 177
+AC V C + + L RH + GQ+P +QC C +L THI G F
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 178 ACNVCGKGYRYKTGLYRHKR 197
AC++CG+ + RH +
Sbjct: 64 ACDICGRKFARSDERKRHTK 83
Score = 28.2 bits (64), Expect = 0.86
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSF 108
K F+C++C + + L H + G++P + C C F
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKF 72
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 32.9 bits (76), Expect = 0.023
Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 127 CGKEYKYKRGLYRHKKFECGQEPKYQC--PHCPHRAKHKANLKTHIAPQLGV--FACNVC 182
C K Y L H + G++P YQC C R LK H GV F C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTC 72
Query: 183 GKGYRYKTGLYRHKREECGQEPKYQC--PHCPHKAKHKANLKTH 224
+ + L H R G++P + C P C K L H
Sbjct: 73 QRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRH 115
Score = 28.6 bits (65), Expect = 0.73
Identities = 34/136 (25%), Positives = 48/136 (35%), Gaps = 29/136 (21%)
Query: 68 KGFEC--QVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACD 125
+ F C C KRY L H + G++P YQC
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKP-YQCDFKD-------------------- 43
Query: 126 VCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACNV-- 181
C + + L RH++ G +P +QC C + +LKTH G F+C
Sbjct: 44 -CERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPS 101
Query: 182 CGKGYRYKTGLYRHKR 197
C K + L RH
Sbjct: 102 CQKKFARSDELVRHHN 117
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 32.1 bits (74), Expect = 0.024
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTH 224
+ C CGK + + L +H+R G++P Y+C C + L H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINH 61
Score = 28.6 bits (65), Expect = 0.35
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSF 108
K + C CGK + L +H++ G++P Y+C +C +F
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAF 52
Score = 28.6 bits (65), Expect = 0.36
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 136 GLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLY 193
G G++P Y C C + L H G + C CGK + +GL
Sbjct: 1 GSSGSSGIHSGEKP-YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLI 59
Query: 194 RHKR 197
H+R
Sbjct: 60 NHQR 63
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 32.8 bits (74), Expect = 0.028
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 13/84 (15%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGM------ 121
F C+ C Y L H + + + ++ + + S +
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMNE--TGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKE 75
Query: 122 -----FACDVCGKEYKYKRGLYRH 140
C CG ++ + L H
Sbjct: 76 DAQKVLKCMYCGHSFESLQDLSVH 99
Score = 32.0 bits (72), Expect = 0.048
Identities = 14/80 (17%), Positives = 18/80 (22%), Gaps = 6/80 (7%)
Query: 122 FACDVCGKEYKYKRGLYRHKK----FECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG-- 175
F C C Y L H + K +L +
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 176 VFACNVCGKGYRYKTGLYRH 195
V C CG + L H
Sbjct: 80 VLKCMYCGHSFESLQDLSVH 99
Score = 30.9 bits (69), Expect = 0.14
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 9/100 (9%)
Query: 148 EPKYQCPHCPHRAKHKANLKTHIA-------PQLGVFACNVCGKGYRYKTGLYRHKREEC 200
K++C C L H+ N K L + +E
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED 76
Query: 201 GQEPKYQCPHCPHKAKHKANLKTH-IAIKHSDRILPPQEG 239
Q+ +C +C H + +L H I KH ++ P G
Sbjct: 77 AQKV-LKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPSSG 115
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 32.1 bits (74), Expect = 0.031
Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 23/89 (25%)
Query: 151 YQCPHCPHRAKHKANLKTHI------APQLGVFACNVCGKGYRYKTGLYRHKR------- 197
+QC C +L THI P FAC++CG+ + RH+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP----FACDICGRKFARSDERKRHRDIQHILPI 59
Query: 198 --EECGQEPKYQCPHCPHKAKHKANLKTH 224
++ + H A LK
Sbjct: 60 LEDKVEE----LLSKNYHLENEVARLKKL 84
Score = 29.8 bits (68), Expect = 0.22
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 13/83 (15%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSG-M----- 121
K F+C++C + + L H + G++P + C C F+ S
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRK-FARSD---ERKRHRDIQHI 56
Query: 122 --FACDVCGKEYKYKRGLYRHKK 142
D + L
Sbjct: 57 LPILEDKVEELLSKNYHLENEVA 79
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 31.5 bits (72), Expect = 0.036
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 157 PHRAKH-KANLKTHIAPQLGVFACNV--CGKGYRYKTGLYRHKREECGQEPKYQCPHCPH 213
PH + + + P +AC V C + + L RH R GQ+P +QC C
Sbjct: 3 PHPMNNLLNYVVPKMRP----YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMR 57
Query: 214 KAKHKANLKTHI 225
+L THI
Sbjct: 58 NFSRSDHLTTHI 69
Score = 26.9 bits (60), Expect = 1.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 122 FACDV--CGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHI 170
+AC V C + + L RH + GQ+P +QC C +L THI
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69
Score = 25.7 bits (57), Expect = 4.7
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 68 KGFECQV--CGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSF 108
+ + C V C +R+ L RH + GQ+P +QC C +F
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNF 59
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.057
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
++CNVCGK + L +H R +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETL-SGPSS 45
Score = 24.4 bits (54), Expect = 6.0
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC 101
K + C VCGK + L++H + +
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETL-SGP 43
Score = 24.0 bits (53), Expect = 8.7
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPH 155
++C+VCGK + L +H + +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETL-SGPSS 45
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 31.3 bits (70), Expect = 0.080
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 6/77 (7%)
Query: 138 YRHKKFECGQEPKYQCPHCPHRAKHKANLKTHI------APQLGVFACNVCGKGYRYKTG 191
+ H + E Y+C +C + H+ + C C +
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 192 LYRHKREECGQEPKYQC 208
L H + E ++
Sbjct: 66 LSEHNLKYHPGEENFKL 82
Score = 31.3 bits (70), Expect = 0.081
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 193 YRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPP 236
+ H ++ E Y+C +C + H+ +H + +L
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNS 49
Score = 27.0 bits (59), Expect = 2.7
Identities = 14/64 (21%), Positives = 18/64 (28%), Gaps = 9/64 (14%)
Query: 86 HRHKQDECGQEPKYQCPQCKDSFFSWSAFHK---------NLSGMFACDVCGKEYKYKRG 136
H H Q E Y+C C + F L+ + C C K
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 137 LYRH 140
L H
Sbjct: 66 LSEH 69
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.084
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
F C++CGK + ++ L RH ++P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP-SGP 43
Score = 25.5 bits (57), Expect = 2.4
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC 101
K F+C +CGK + + L+RH ++P
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP-SGP 43
Score = 24.8 bits (55), Expect = 5.8
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQC 153
F CD+CGK + + L RH ++P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP-SGP 43
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 30.5 bits (70), Expect = 0.093
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC 211
+ C+ CGK + + + L +H+R G++P Y+C C
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDEC 52
Score = 28.6 bits (65), Expect = 0.50
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSF 108
+ ++C CGK + + L +H++ G++P Y+C +C +F
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAF 56
Score = 26.6 bits (60), Expect = 2.2
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 137 LYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYR 194
R + + + Y+C C H ++L H G + C+ CGK + ++ L
Sbjct: 6 SGRSEWQQRERRR-YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 195 HKR 197
H R
Sbjct: 65 HHR 67
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.12
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
C+VC K +RY + L H+R G++P
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKP-SGP 43
Score = 24.4 bits (54), Expect = 6.3
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC 101
K ++C VC K ++Y L H++ G++P
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP-SGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.14
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
F C CGK + GL +H+R G++P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP-SGPSS 45
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.1 bits (66), Expect = 0.16
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 177 FACNVCGKGYRYKTGLYRHKR 197
C+ CG+G+ K+ L +H+R
Sbjct: 13 HQCHECGRGFTLKSHLNQHQR 33
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 29.0 bits (64), Expect = 0.16
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQ 90
K + C +CGKRYK + GL H
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYA 28
Score = 26.7 bits (58), Expect = 1.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 122 FACDVCGKEYKYKRGLYRHK 141
+ACD+CGK YK + GL H
Sbjct: 8 YACDICGKRYKNRPGLSYHY 27
Score = 24.7 bits (53), Expect = 5.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 177 FACNVCGKGYRYKTGLYRHKR 197
+AC++CGK Y+ + GL H
Sbjct: 8 YACDICGKRYKNRPGLSYHYA 28
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.16
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
C+VCGK + ++ L H+R G++P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKP-SGPSS 45
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.17
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
+ C+ CGK + K L H+R G++P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP-SGPSS 45
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.18
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
CN CGK + ++ L H+ G++P
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKP-SGPSS 45
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.18
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
C CGK + +K+ L H+R +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKH-SGP 43
Score = 24.4 bits (54), Expect = 6.3
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC 101
K +C CGK + +K L H++ +
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKH-SGP 43
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 28.7 bits (63), Expect = 0.18
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 206 YQCPHCPHKAKHKANLKTHIAIKHS 230
YQC +C ++ +NLKTHI KHS
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHS 27
Score = 24.8 bits (53), Expect = 3.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 151 YQCPHCPHRAKHKANLKTHI 170
YQC +C R+ +NLKTHI
Sbjct: 3 YQCQYCEFRSADSSNLKTHI 22
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.18
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
+ C VCGK +R + L +H G+ P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERP-SGP 43
Score = 24.0 bits (53), Expect = 9.4
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC 101
K ++CQVCGK ++ L +H G+ P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP-SGP 43
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 29.6 bits (66), Expect = 0.18
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 6/69 (8%)
Query: 136 GLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRYKTGLYRH 195
+ +K G +C C ++ L P C C K + L +
Sbjct: 5 SSGKRQKIHLGDRS-QKCSKCGIIFIRRSTLSRRKTPM-----CEKCRKDSCQEAALNKD 58
Query: 196 KREECGQEP 204
+ E G++
Sbjct: 59 EGNESGKKT 67
Score = 27.7 bits (61), Expect = 0.83
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 84 GLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKF 143
+ ++ G +C +C F S + + C+ C K+ + L + +
Sbjct: 5 SSGKRQKIHLGDRS-QKCSKCGIIFIRRSTLSRRKT--PMCEKCRKDSCQEAALNKDEGN 61
Query: 144 ECGQEP 149
E G++
Sbjct: 62 ESGKKT 67
Score = 25.0 bits (54), Expect = 7.3
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 67 SKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHK 116
+ +C CG + + L R K C +C+ +A +K
Sbjct: 16 DRSQKCSKCGIIFIRRSTLSRRK--------TPMCEKCRKDSCQEAALNK 57
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.7 bits (65), Expect = 0.19
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
C CGK ++ K+ L H+R G++P
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKP-SGP 43
Score = 24.8 bits (55), Expect = 5.7
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC 101
+ +EC CGK +K K L H++ G++P
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP-SGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.19
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
CN CGK + + L RH+R G++P
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKP-SGPSS 45
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.19
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
CN CGK + + L RH+R G++P
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKP-SGPSS 45
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.19
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
C+VC K + + L +H+R G++P
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKP-SGPSS 45
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.20
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
CN CGK +R ++ L H+ G++P
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKP-SGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 28.7 bits (65), Expect = 0.22
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
F C CGK +R K L H+R G++
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKS-GPS 43
Score = 24.4 bits (54), Expect = 6.8
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC 101
K FEC CGK ++ K L H++ G++
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKS-GPS 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.23
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
+ CN CGK + K+ L H+R G++P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP-SGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.23
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
+ C CGK + K L +H+R G++P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP-SGPSS 45
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.24
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
CN CGK + + L H+ G++P
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKP-SGPSS 45
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.24
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
CN CGK + + L RH+R G +P
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKP-SGPSS 45
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 28.3 bits (64), Expect = 0.25
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
C CGK +R+ + L +H+R G++P
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKP-SGP 43
Score = 25.2 bits (56), Expect = 3.9
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ 103
K + C+ CGK +++ L +H++ G++P
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP-SGPSS 45
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.25
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
C+VCGK + + L H+R G++P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP-SGP 43
Score = 24.0 bits (53), Expect = 8.2
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC 101
K ++C VCGK + L H++ G++P
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKP-SGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.25
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
F CN CGKG+ ++ L H R ++
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKS-SGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.25
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
+ CN CGK +R+ + L RH+R G++P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP-SGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.25
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
C VCGK + ++ L +H++ G++P
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKP-SGPSS 45
Score = 24.4 bits (54), Expect = 7.1
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC 101
+ + C VCGK + + L +H++ G++P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP-SGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.25
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
C CGKG+ + LY H G++P
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKP-SGP 43
Score = 24.4 bits (54), Expect = 6.5
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC 101
K ++C+ CGK + +R L+ H G++P
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP-SGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.27
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
+ C CGKGY + L H+R G++
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKT-SGP 43
Score = 24.0 bits (53), Expect = 9.0
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC 101
K ++C+ CGK Y + L H++ G++
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEKT-SGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.27
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
F C CGKG+ + Y H+R G++P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP-SGP 43
Score = 24.1 bits (53), Expect = 8.9
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC 101
K F+C+ CGK + + H++ G++P
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP-SGP 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.27
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
C CGKGY K L H++ G+ P
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERP-SGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 28.2 bits (64), Expect = 0.28
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
CN CGK +R K+ L H R G+
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESG-PSS 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 28.3 bits (64), Expect = 0.29
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
F C+ C K + K+ L H++ ++P
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKP-SGP 41
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.29
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
+ CN CGK + + L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP-SGPSS 45
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.29
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
F C+ C K + K+ L H+R G++P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP-SGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.30
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
+ CN CGK + + L H + ++
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKS-SGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.30
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
+ CN CGK + + L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP-SGPSS 45
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.30
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
F C+ CGK + +KT L H++ G+ P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP-SGP 43
Score = 24.0 bits (53), Expect = 9.5
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC 101
F C CGK + +K L H++ G+ P
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERP-SGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.31
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
F C CGK Y + L +H+R G++P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP-SGPSS 45
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.32
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
+ CN CGK + + L RH+ G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP-SGPSS 45
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.32
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
+ CN CGK + K+ L RH+R G++P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP-SGP 43
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (63), Expect = 0.33
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 179 CNVCGKGYRYKTGLYRHKR 197
C+ CGK + Y + L H+R
Sbjct: 15 CDECGKNFCYISALRIHQR 33
Score = 24.9 bits (55), Expect = 5.0
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 68 KGFECQVCGKRYKYKRGLHRHK 89
K C CGK + Y L H+
Sbjct: 11 KSHTCDECGKNFCYISALRIHQ 32
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.34
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
CN CGK + L +H+R G++P
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKP-SGPSS 45
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.35
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
CN CGK +R + L H+ G++P
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKP-SGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.8 bits (63), Expect = 0.35
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
CN CGK + + L H R G++P
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKP-SGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.35
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
C CGK + + +H+R GQ P
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRP-SGPSS 45
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.36
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
C++CGK + K+ L+ H++ G++P
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKP-SGPSS 45
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 28.0 bits (62), Expect = 0.36
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC 211
AC +CGK +R L RHK G++P Y
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPS 46
Score = 27.2 bits (60), Expect = 0.85
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC 104
K C++CGK ++ L+RHK G++P Y
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPS 46
Score = 26.1 bits (57), Expect = 2.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHC 156
AC++CGK ++ L RHK G++P Y
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPS 46
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.37
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
+ C+ CGK + L RH+R G++P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP-SGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.37
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
C CGK + + + L H+R G+ P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENP-SGPSS 45
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 27.9 bits (63), Expect = 0.38
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
+ CN CGK + + L +H++ G++P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP-SGPSS 45
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 27.9 bits (63), Expect = 0.39
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
F C CGKG+ ++ L H + G++P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP-SGPSS 45
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.42
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
F CN C K + + L H+R G++P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP-SGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.42
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
+ C CGK + ++ L +H++ Q+P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP-SGPSS 45
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.44
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
+ C+ CGK + K+ L H R G++P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP-SGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.8 bits (63), Expect = 0.44
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
CN C K + K+ L H+R G+
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESG-PSS 43
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 28.7 bits (65), Expect = 0.46
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 177 FACNV--CGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKH 229
+ C C K + + L RH++ G + C K H+A H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 26.0 bits (58), Expect = 4.6
Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 23/100 (23%)
Query: 71 ECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKE 130
+ CGK +K L H+ Q P Y+CP + C K
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLP-YECPH---------------------EGCDKR 42
Query: 131 YKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHI 170
+ L RH+K G + C K H+
Sbjct: 43 FSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWTLYLKHV 81
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.46
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
F C CG + + L++H R +P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDP-SGPSS 45
Score = 24.9 bits (55), Expect = 4.6
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEP 97
K F+C+ CG + + L +H + +P
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.46
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
C+ CGK + L +H ++P
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKP-SGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.8 bits (63), Expect = 0.48
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
+ C+ CGK +R + L RH+ G++P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP-SGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 27.5 bits (62), Expect = 0.51
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
+ C CGK + T L +H+R G++P
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP-SGPSS 45
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.52
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
F C CGK +R L H R G++P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP-SGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 27.5 bits (62), Expect = 0.55
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
+ C+ C K + K+ L H+R G +P
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKP-SGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 27.5 bits (62), Expect = 0.55
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
CN CGK + +K+ L H+R G
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSG-PSS 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.59
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
+ C+ CGK + T L H+R G P
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRP-SGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.59
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
C+ CGK + K+ L H+R G++P
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKP-SGPSS 45
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.59
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
+ CN CGK + + L H+R G +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP-SGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.60
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
C+ CGK + K+ L+ H+R G+ P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENP-SGPSS 45
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.61
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
+ C VC K + K L +H++ G++P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP-SGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.65
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
C+ CGK + +K+ L H++ G+
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERH-SGP 43
Score = 24.4 bits (54), Expect = 8.1
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC 101
K ++C CGK + +K L H++ G+
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERH-SGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.70
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
C CGK + + + L H+R G++P
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKP-SGP 43
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 29.1 bits (66), Expect = 0.71
Identities = 30/158 (18%), Positives = 48/158 (30%), Gaps = 36/158 (22%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDEC---GQEPKYQCPQCKDSFFSWSAFHKNLSGM--- 121
C + + + L H E ++ + C S F K +
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGGCSREL-RPF-KAQYMLVVH 58
Query: 122 ---------FACDV--CGKEYKYKRGLYRHKKFECGQEPKYQCPHCP---------HRAK 161
C C K Y L H + G++P Y C H RAK
Sbjct: 59 MRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAK 117
Query: 162 HKANLKTHIAPQLGVFACNV--CGKGYRYKTGLYRHKR 197
H+ ++ P + C + C K Y + L +H +
Sbjct: 118 HQNRTHSNEKP----YVCKLPGCTKRYTDPSSLRKHVK 151
Score = 26.0 bits (58), Expect = 8.9
Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 9/55 (16%)
Query: 179 CNVCGKGYRYKTGLYRHKREEC---GQEPKYQCPHCPHKAKHKA-----NLKTHI 225
+ C + + + L H E ++ + C + + L H+
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGGCSRELRPFKAQYMLVVHM 59
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.74
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
C C K + L +HKR G+
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERS-SGP 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 27.1 bits (61), Expect = 0.76
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 177 FACNVCGKGYRYKTGLYRHKR 197
+ C +CG +R+ L H R
Sbjct: 12 YPCEICGTRFRHLQTLKSHLR 32
Score = 25.5 bits (57), Expect = 2.2
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 68 KGFECQVCGKRYKYKRGLHRH 88
K + C++CG R+++ + L H
Sbjct: 10 KPYPCEICGTRFRHLQTLKSH 30
Score = 24.0 bits (53), Expect = 9.0
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 151 YQCPHCPHRAKHKANLKTHI 170
Y C C R +H LK+H+
Sbjct: 12 YPCEICGTRFRHLQTLKSHL 31
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 27.9 bits (63), Expect = 0.76
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 122 FACDV--CGKEYKYKRGLYRHKKFECGQEPKYQCPH--CPHRAKHKANLKTHIAPQLGV- 176
CD CG+ + ++ L HKK++ + + CP C K +LK H+
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 177 -FACNVCGKGY 186
+ C G
Sbjct: 68 DYICEFSGPSS 78
Score = 27.5 bits (62), Expect = 1.1
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 24/91 (26%)
Query: 68 KGFECQV--CGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACD 125
G C CG+ + ++ L+ HK+ + + + CP+
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPE---------------------P 44
Query: 126 VCGKEYKYKRGLYRHKKFECGQEPKYQCPHC 156
CGK + +K+ L H K Y C
Sbjct: 45 ACGKSFNFKKHLKEHMKLHSDTRD-YICEFS 74
Score = 26.4 bits (59), Expect = 2.7
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 68 KGFECQ--VCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSF 108
K F C CGK + +K+ L H + Y C S
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEFSGPSS 78
Score = 26.0 bits (58), Expect = 3.8
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 177 FACNV--CGKGYRYKTGLYRHKREECGQEPKYQCPHCP-HKA-KHKANLKTHIAI 227
C+ CG+ + + L HK+ + + + CP K+ K +LK H+ +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.77
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
+ C CGK + L +H+R G++P
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP-SGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.78
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
F C CGK + + L+ H+R G++P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP-SGP 43
Score = 24.8 bits (55), Expect = 4.5
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ 103
K F+C+ CGKR+ LH H++ G++P
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP-SGPSS 45
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.81
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
C CGKGY+ + L H+R G++
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKL-SGP 43
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 27.2 bits (61), Expect = 0.84
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSF 108
K + CQ CGK + L+ H + E ++C
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 26.4 bits (59), Expect = 1.8
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 177 FACNVCGKGYRYKTGLYRH-KREECGQEPKYQCPHC 211
+ C CGKG+ L H K+ + P ++C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQVW 47
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (60), Expect = 0.89
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
C C + + L H+ G++P
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKP-SGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.91
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
F C CGK + + L+ H+R G++P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP-SGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.96
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
F C CGK + K+ L H++ G++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP-SGPSS 45
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 1.0
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
C+ CGK + K+GL+ H++ G+
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERH-SGP 43
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.7 bits (58), Expect = 1.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 151 YQCPHCPHRAKHKANLKTHIAPQLG 175
Y+CP C + + KANL H+ G
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTG 34
Score = 25.9 bits (56), Expect = 1.7
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 206 YQCPHCPHKAKHKANLKTHIAIKHS 230
Y+CP C + + KANL H+ KH+
Sbjct: 10 YKCPQCSYASAIKANLNVHLR-KHT 33
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 1.0
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
C CGK + ++ L+ H++ G++P
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKP-SGPSS 45
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 29.2 bits (66), Expect = 1.2
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 15/67 (22%)
Query: 42 NVD----KSLNTNVLNAHGFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEP 97
NVD S NT V++ HG N++ C C K K + + + Q P
Sbjct: 132 NVDGLHEASGNTKVISLHG-NVF--------EAVCCTCNKIVKLNKIMLQKTSHFMHQLP 182
Query: 98 KYQCPQC 104
C
Sbjct: 183 P--ECPC 187
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 26.7 bits (60), Expect = 1.2
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
F C CGK + + L H+R G++P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP-SGPSS 45
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 26.4 bits (59), Expect = 1.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEP 204
C CGK +R K L H+R G P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGP 38
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 29.1 bits (64), Expect = 1.5
Identities = 6/48 (12%), Positives = 8/48 (16%), Gaps = 2/48 (4%)
Query: 152 QCPHCPHRAKHKANLKTH--IAPQLGVFACNVCGKGYRYKTGLYRHKR 197
A + C+VC L H
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVA 201
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 28.6 bits (63), Expect = 1.6
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 174 LGVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR 232
L V+ K + H+ G E + Q + +L+ I + +
Sbjct: 178 LRVWYSEDYMKRLHSMSQETIHRNLARG-EKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 27.5 bits (60), Expect = 4.4
Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 8/60 (13%)
Query: 128 GKEYKYKRGLYRHKKFEC---GQEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGK 184
++Y + + E + Q + +L+ I + GK
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH-----LSVLRQGK 237
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.0 bits (58), Expect = 1.7
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
C+ CGK + + +H+R G++P
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKP-SGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 25.9 bits (58), Expect = 1.8
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
C+ CGK + K L H+R G+
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESG-PSS 41
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 27.0 bits (60), Expect = 1.8
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 10/47 (21%)
Query: 72 CQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNL 118
C+ C + + + + K CP C+ + + NL
Sbjct: 42 CRAC---------ITLNYESNRNTDGKGNCPVCRVP-YPFGNLKPNL 78
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 1.8
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQCPH 210
C+ CGK + K+ L H+R G++P
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKP-SGPSS 45
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 26.0 bits (58), Expect = 1.9
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
+ C+ C K + K L H+R ++P
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKP-SGP 43
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 27.2 bits (61), Expect = 1.9
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 177 FACNV--CGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHI 225
+ C C + L RH R+ G +P +QC C +L H+
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALHM 95
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 27.5 bits (62), Expect = 2.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH--CPHKAKHKANLKTH 224
C CGK + + L RH+ G++P +QC C + NL+TH
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTH 83
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 25.6 bits (57), Expect = 2.3
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQCP 209
C CGK + T L RH R E
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 28.6 bits (64), Expect = 2.3
Identities = 11/85 (12%), Positives = 26/85 (30%), Gaps = 11/85 (12%)
Query: 61 PLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQ--EPKYQCPQCKDSFFSWSAFHKNL 118
P +Y + Y ++R G + ++ K ++
Sbjct: 38 PFSAKYVPFNAAPGSTESYSLDEIVYR---SRSGGLLDVEHDMEALKRFDGAYWR----- 89
Query: 119 SGMFACDVCGKEYKYKRGLYRHKKF 143
+F V + Y G++ K++
Sbjct: 90 -DLFDSRVGKSTWPYGSGVWSKKEW 113
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_m 1ysh_D 2zkr_z
Length = 92
Score = 26.7 bits (59), Expect = 2.3
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 87 RHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGK 129
+ K+ E Q KY C C A G++ C CGK
Sbjct: 25 QIKKMEVSQHSKYFCEFCGKFAVKRKA-----VGIWGCKDCGK 62
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 25.5 bits (57), Expect = 2.4
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 179 CNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
C CGK + K L H++ GQ
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSG-PSS 43
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 28.2 bits (62), Expect = 2.6
Identities = 18/112 (16%), Positives = 26/112 (23%), Gaps = 26/112 (23%)
Query: 96 EPKYQCPQCKDS-FFSWSAFHKNLSG--MFACDVCGKEYKYKRGLYRHKKFECGQEPKYQ 152
E + CP C +G +C +C E+ Y R +
Sbjct: 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRI---------------K 224
Query: 153 CPHCPHRAKHK-----ANLKTHIAPQLGVFACNVCGKGYRYKTGLYRHKREE 199
C HC + + L C C Y Y
Sbjct: 225 CSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQ---GYLKQFYLEFDRH 273
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 26.0 bits (57), Expect = 2.7
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 99 YQCPQCKDSFFSWSAFH--KNLSGMFACDVCGKE 130
++CP C +F A ++G F C C E
Sbjct: 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTE 48
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 28.2 bits (63), Expect = 2.7
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 11/60 (18%)
Query: 46 SLNTNVLNAHGFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCK 105
+ ++ AHG + C CGK Y + + + K C C
Sbjct: 122 VKDDLIIEAHG-SFA--------HCHCIGCGKVYPPQVFKSKLAEHPIKDFVK--CDVCG 170
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 25.2 bits (56), Expect = 2.8
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEP 204
+ C+ CGK + K L H R G P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA,
protein-protein; 2.40A {Haloarcula marismortui} SCOP:
g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1*
1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1*
1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Length = 73
Score = 26.3 bits (58), Expect = 2.8
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 87 RHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGK 129
R + E + KY+CP C ++ + ++ C CG
Sbjct: 16 RVRDVEIKHKKKYKCPVCGFPKLKRAS-----TSIWVCGHCGY 53
Score = 24.7 bits (54), Expect = 9.4
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 10/47 (21%)
Query: 139 RHKKFECGQEPKYQCPHCPHRA-KHKANLKTHIAPQLGVFACNVCGK 184
R + E + KY+CP C K + ++ C CG
Sbjct: 16 RVRDVEIKHKKKYKCPVCGFPKLKRAS---------TSIWVCGHCGY 53
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 26.5 bits (59), Expect = 2.9
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 10/47 (21%)
Query: 72 CQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNL 118
CQ C L + + + + CP C+ S + N
Sbjct: 42 CQAC---------LTANHKKSMLDKGESSCPVCRIS-YQPENIRPNR 78
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue,
hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP:
c.31.1.5
Length = 235
Score = 27.9 bits (63), Expect = 3.0
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 21/67 (31%)
Query: 42 NVD----KSLNTNVLNAHGFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEP 97
N+D ++ NTNV++ HG + C G+ + + E
Sbjct: 91 NIDNLHERAGNTNVIHMHG-ELL--------KVRCSQSGQVLDWT--------GDVTPED 133
Query: 98 KYQCPQC 104
K C Q
Sbjct: 134 KCHCCQF 140
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 25.2 bits (55), Expect = 3.3
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEP 204
F C+ C + + + L +H+R +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 27.7 bits (61), Expect = 3.4
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 11/60 (18%)
Query: 46 SLNTNVLNAHGFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCK 105
+ ++ AHG + C CGK Y + + + K C C
Sbjct: 130 VKDDLIIEAHG-SFA--------HCHCIGCGKVYPPQVFKSKLAEHPIKDFVK--CDVCG 178
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 27.0 bits (59), Expect = 4.1
Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 13/129 (10%)
Query: 91 DECGQEPKYQCPQCKDSFFSWSAFHKN------LSGMFACDVCGKEYKYKRGLYRHKKFE 144
+ ++ ++CP + F N LS M C G +K + +
Sbjct: 46 IKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAH 105
Query: 145 CGQEPKYQCPHCPHRAKHKANLKTHIAPQ--LGVFACNVCGKGYRYKTGLYRHKREECGQ 202
C CP C + ++ HI +C+ C ++ H + C
Sbjct: 106 CEFALM-DCPQCQRPFQKF-HINIHILKDCPRRQVSCDNCAASMAFED-KEIHD-QNCPL 161
Query: 203 EPKYQCPHC 211
+ H
Sbjct: 162 ALE-HHHHH 169
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 24.9 bits (55), Expect = 4.3
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEP 204
+ C CGK + + L H+R P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 26.5 bits (58), Expect = 4.4
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 91 DECGQEPKYQCPQCKDSFFSWSAFHKNL 118
D + + CP C+ A N
Sbjct: 80 DRSFRAQVFSCPACRYDLGRSYAMQVNQ 107
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 27.1 bits (61), Expect = 4.6
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 21/67 (31%)
Query: 42 NVD----KSLNTNVLNAHGFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEP 97
NVD ++ + NV++ HG ++ + C C ++ + + P
Sbjct: 99 NVDDLHERAGSRNVIHLHG-SLRVVR--------CTSCNNSFEVESAP------KIPPLP 143
Query: 98 KYQCPQC 104
K C +C
Sbjct: 144 K--CDKC 148
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 26.0 bits (58), Expect = 4.7
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 68 KGFECQV--CGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSF 108
K + C CG ++ L RH + G P +QC +C +F
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQKCDRAF 75
Score = 25.2 bits (56), Expect = 7.7
Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 5/80 (6%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQC--PHCPHRAKHKANLKTHIAPQLGV--F 177
CGK Y L H + G++P Y C C + L H G F
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 178 ACNVCGKGYRYKTGLYRHKR 197
C C + + L H +
Sbjct: 67 QCQKCDRAFSRSDHLALHMK 86
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 25.7 bits (57), Expect = 5.3
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 9/47 (19%)
Query: 72 CQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNL 118
C+ C +K+ K CP C S +S+ N
Sbjct: 35 CRACITVS--------NKEAVTSMGGKSSCPVCGIS-YSFEHLQANQ 72
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.5 bits (54), Expect = 6.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 177 FACNVCGKGYRYKTGLYRHKR 197
+ CN CGK + L RH++
Sbjct: 13 YNCNECGKAFTRIFHLTRHQK 33
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 24.2 bits (53), Expect = 7.0
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 177 FACNVCGKGYRYKTGLYRHKR 197
++C C + + L +H++
Sbjct: 11 YSCAECKETFSDNNRLVQHQK 31
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei
structure initiative; 2.00A {Nitrosomonas europaea atcc
19718}
Length = 189
Score = 26.2 bits (58), Expect = 8.2
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 7/38 (18%)
Query: 72 CQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFF 109
C CG + E P+Y CP+C +
Sbjct: 6 CSQCGGE-------VILRIPEGDTLPRYICPKCHTIHY 36
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 23.6 bits (50), Expect = 9.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECG 94
+ + C VCGKR+ K + H + G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.454
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,595,463
Number of extensions: 191481
Number of successful extensions: 1480
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1273
Number of HSP's successfully gapped: 532
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.7 bits)