RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12030
(245 letters)
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 30.9 bits (69), Expect = 0.009
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 206 YQCPHCPHKAKHKANLKTHIAIKHS 230
YQC +C ++ +NLKTHI KHS
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHS 27
Score = 27.0 bits (59), Expect = 0.23
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 151 YQCPHCPHRAKHKANLKTHI 170
YQC +C R+ +NLKTHI
Sbjct: 3 YQCQYCEFRSADSSNLKTHI 22
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 29.3 bits (65), Expect = 0.058
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 182 CGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAI 227
CGK + +K+ RH Y C C K K K +L H+ I
Sbjct: 8 CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHMKI 52
Score = 29.3 bits (65), Expect = 0.060
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 148 EPKYQCPHCPHRAKHKANLKTHIAPQLGVFA--CNVCGKGYRYKTGLYRHKR 197
+ Y C C HK+ H++ LG+ C VCGK ++ K L H +
Sbjct: 1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51
Score = 28.1 bits (62), Expect = 0.17
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTH 169
+ C CGK + +K RH Y C C + K K +L H
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGH 49
Score = 24.3 bits (52), Expect = 3.7
Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 25/75 (33%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVC 127
K + CQ CGK + +K RH G + C VC
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLR------------------------PYGCGVC 36
Query: 128 GKEYKYKRGLYRHKK 142
GK++K K L H K
Sbjct: 37 GKKFKMKHHLVGHMK 51
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 27.6 bits (62), Expect = 0.14
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 177 FACNVCGKGYRYKTGLYRHKR 197
+ C CGK + + L +H+R
Sbjct: 8 YGCVECGKAFSRSSILVQHQR 28
Score = 26.4 bits (59), Expect = 0.41
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 68 KGFECQVCGKRYKYKRGLHRHK 89
K + C CGK + L +H+
Sbjct: 6 KPYGCVECGKAFSRSSILVQHQ 27
Score = 23.3 bits (51), Expect = 4.0
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 122 FACDVCGKEYKYKRGLYRHKK 142
+ C CGK + L +H++
Sbjct: 8 YGCVECGKAFSRSSILVQHQR 28
Score = 23.3 bits (51), Expect = 4.1
Identities = 5/19 (26%), Positives = 6/19 (31%)
Query: 151 YQCPHCPHRAKHKANLKTH 169
Y C C + L H
Sbjct: 8 YGCVECGKAFSRSSILVQH 26
Score = 22.6 bits (49), Expect = 8.9
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 206 YQCPHCPHKAKHKANLKTHIAI 227
Y C C + L H +
Sbjct: 8 YGCVECGKAFSRSSILVQHQRV 29
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 27.6 bits (62), Expect = 0.15
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 177 FACNVCGKGYRYKTGLYRHKR 197
F C VC + + + L RH R
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR 23
Score = 25.7 bits (57), Expect = 0.63
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 68 KGFECQVCGKRYKYKRGLHRHK 89
+ F C+VC + + + L RH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
Score = 22.6 bits (49), Expect = 8.5
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 122 FACDVCGKEYKYKRGLYRHKK 142
F C+VC + + + L RH +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR 23
Score = 22.2 bits (48), Expect = 9.5
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 151 YQCPHCPHRAKHKANLKTHI 170
+ C C + +LK H
Sbjct: 3 FVCEVCTRAFARQEHLKRHY 22
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 27.2 bits (61), Expect = 0.19
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 177 FACNVCGKGYRYKTGLYRHKR 197
+ C CGK + +GL H+R
Sbjct: 3 YKCLECGKAFSQNSGLINHQR 23
Score = 23.7 bits (52), Expect = 3.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 68 KGFECQVCGKRYKYKRGLHRHK 89
K ++C CGK + GL H+
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQ 22
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 27.2 bits (61), Expect = 0.19
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 177 FACNVCGKGYRYKTGLYRHKR 197
F C +C + + L H R
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR 24
Score = 25.3 bits (56), Expect = 0.90
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 68 KGFECQVCGKRYKYKRGLHRHK 89
K F+C++C + + L H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI 23
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.3 bits (61), Expect = 0.20
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 206 YQCPHCPHKAKHKANLKTHIAIKHSD 231
Y+C C + +K HI KH++
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTE 34
Score = 26.5 bits (59), Expect = 0.39
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQ 90
K +EC +C R+ + H
Sbjct: 7 KPYECYICHARFTQSGTMKMHIL 29
Score = 24.9 bits (55), Expect = 1.2
Identities = 3/21 (14%), Positives = 7/21 (33%)
Query: 177 FACNVCGKGYRYKTGLYRHKR 197
+ C +C + + H
Sbjct: 9 YECYICHARFTQSGTMKMHIL 29
Score = 24.6 bits (54), Expect = 1.9
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 151 YQCPHCPHRAKHKANLKTHI 170
Y+C C R +K HI
Sbjct: 9 YECYICHARFTQSGTMKMHI 28
Score = 22.6 bits (49), Expect = 10.0
Identities = 3/21 (14%), Positives = 7/21 (33%)
Query: 122 FACDVCGKEYKYKRGLYRHKK 142
+ C +C + + H
Sbjct: 9 YECYICHARFTQSGTMKMHIL 29
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 27.3 bits (61), Expect = 0.21
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC 101
K + CQ CGK + L+ H + E ++C
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 26.1 bits (58), Expect = 0.48
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQC 208
+ C CGKG+ L H ++ E ++C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 24.2 bits (53), Expect = 2.6
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 206 YQCPHCPHKAKHKANLKTHIAIKHS 230
Y C C +L HI H+
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHT 30
Score = 23.8 bits (52), Expect = 3.9
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 151 YQCPHCPHRAKHKANLKTHI 170
Y C C +L HI
Sbjct: 6 YICQSCGKGFSRPDHLNGHI 25
Score = 23.0 bits (50), Expect = 6.5
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQC 153
+ C CGK + L H K E ++C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 27.0 bits (59), Expect = 0.21
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 205 KYQCPHCPHKAKHKANLKTHIAIKHS 230
K+ CPHC K++L H+ +HS
Sbjct: 2 KFHCPHCDTVIARKSDLGVHLRKQHS 27
Score = 25.0 bits (54), Expect = 1.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 150 KYQCPHCPHRAKHKANLKTHI 170
K+ CPHC K++L H+
Sbjct: 2 KFHCPHCDTVIARKSDLGVHL 22
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 27.4 bits (60), Expect = 0.23
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 68 KGFECQVCGKRYKYKRGLHRHK 89
K +EC +C KR+ ++ HRH
Sbjct: 4 KPYECNICAKRFMWRDSFHRHV 25
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 27.1 bits (60), Expect = 0.42
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 97 PKYQCPQCKDSFFSWSAFH--KNLSGMFACDVCGKE 130
++CP C +F A ++G F C C E
Sbjct: 13 ASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTE 48
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 25.8 bits (57), Expect = 0.58
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 177 FACNVCGKGYRYKTGLYRHKR 197
+AC+ C K +R K L H +
Sbjct: 9 YACSHCDKTFRQKQLLDMHFK 29
Score = 24.6 bits (54), Expect = 1.9
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 68 KGFECQVCGKRYKYKRGLHRHK 89
K + C C K ++ K+ L H
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHF 28
Score = 23.9 bits (52), Expect = 2.9
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 203 EPKYQCPHCPHKAKHKANLKTHIAIKH 229
E Y C HC + K L H H
Sbjct: 6 EKPYACSHCDKTFRQKQLLDMHFKRYH 32
Score = 23.1 bits (50), Expect = 6.4
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 148 EPKYQCPHCPHRAKHKANLKTH 169
E Y C HC + K L H
Sbjct: 6 EKPYACSHCDKTFRQKQLLDMH 27
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 25.8 bits (57), Expect = 0.65
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 177 FACNVCGKGYRYKTGLYRHKR 197
FAC C K + L +H +
Sbjct: 3 FACPECPKRFMRSDHLSKHIK 23
Score = 25.4 bits (56), Expect = 0.84
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 68 KGFECQVCGKRYKYKRGLHRHK 89
K F C C KR+ L +H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHI 22
Score = 23.1 bits (50), Expect = 6.1
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 151 YQCPHCPHRAKHKANLKTH 169
+ CP CP R +L H
Sbjct: 3 FACPECPKRFMRSDHLSKH 21
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 25.5 bits (56), Expect = 0.98
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAI 227
R + ++ + Y+C C H ++L H
Sbjct: 2 RSEWQQRERRR-YKCDECGKSFSHSSDLSKHRRT 34
Score = 24.7 bits (54), Expect = 1.6
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 139 RHKKFECGQEPKYQCPHCPHRAKHKANLKTH 169
R + + + Y+C C H ++L H
Sbjct: 2 RSEWQQRERRR-YKCDECGKSFSHSSDLSKH 31
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 24.6 bits (53), Expect = 1.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 178 ACNVCGKGYRYKTGLYRHKREECGQEP 204
AC +CGK +R L RHK G++P
Sbjct: 7 ACEICGKIFRDVYHLNRHKLSHSGEKP 33
Score = 23.5 bits (50), Expect = 4.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 123 ACDVCGKEYKYKRGLYRHKKFECGQEP 149
AC++CGK ++ L RHK G++P
Sbjct: 7 ACEICGKIFRDVYHLNRHKLSHSGEKP 33
Score = 23.5 bits (50), Expect = 5.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 68 KGFECQVCGKRYKYKRGLHRHKQDECGQEP 97
K C++CGK ++ L+RHK G++P
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSHSGEKP 33
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 24.3 bits (53), Expect = 2.1
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 177 FACNVCGKGYRYKTGLYRHKR 197
F C +C + K RH +
Sbjct: 8 FVCRICLSAFTTKANCARHLK 28
Score = 24.3 bits (53), Expect = 2.2
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 68 KGFECQVCGKRYKYKRGLHRHK 89
+ F C++C + K RH
Sbjct: 6 RPFVCRICLSAFTTKANCARHL 27
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 24.3 bits (53), Expect = 2.5
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 177 FACN--VCGKGYRYKTGLYRHKREECGQEPKYQC 208
F+C CGK + +K L H + Y C
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YIC 34
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.0 bits (49), Expect = 5.2
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 206 YQCPHCPHKAKHKANLKTHIAIKHSD 231
++C +C K +NL H+ H D
Sbjct: 3 FKCNYCSFDTKQPSNLSKHMKKFHGD 28
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 23.2 bits (50), Expect = 5.4
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 177 FACNVCGKGYRYKTGLYRHKR 197
F C C + + L H++
Sbjct: 12 FQCPDCDRSFSRSDHLALHRK 32
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo
sapiens) [TaxId: 9606]}
Length = 173
Score = 25.2 bits (55), Expect = 6.4
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 91 DECGQEP-KYQCPQCKDSFFSWSAFHKNLSGMF 122
D G+ K CP+C D + S+ H + G +
Sbjct: 120 DIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAY 152
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 28
Score = 22.7 bits (48), Expect = 7.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 70 FECQVCGKRYKYKRGLHRHKQDEC 93
FEC CGK Y K L H+ C
Sbjct: 2 FECPKCGKCYFRKENLLEHEARNC 25
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 22.3 bits (48), Expect = 9.2
Identities = 7/23 (30%), Positives = 7/23 (30%), Gaps = 2/23 (8%)
Query: 177 FACNV--CGKGYRYKTGLYRHKR 197
C C K Y L H R
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHLR 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.454
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 933,363
Number of extensions: 43705
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 140
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.4 bits)