BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12031
(128 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q90932|NFIX_CHICK Nuclear factor 1 X-type OS=Gallus gallus GN=NFIX PE=2 SV=1
Length = 431
Score = 215 bits (547), Expect = 8e-56, Method: Composition-based stats.
Identities = 97/123 (78%), Positives = 108/123 (87%)
Query: 5 EKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQ 64
EK EVKQKWASRLL KLRKDI ECREDFVLS+TGKK CVLSNPDQKGK+RRIDCLRQ
Sbjct: 63 EKPEVKQKWASRLLAKLRKDIRPECREDFVLSVTGKKAPCCVLSNPDQKGKIRRIDCLRQ 122
Query: 65 ADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANY 124
ADKVWRLDLVMVILFK +PLESTDGERL KAP+CA P LCV P+HI V+++ELDLYLA +
Sbjct: 123 ADKVWRLDLVMVILFKGVPLESTDGERLAKAPQCASPGLCVQPHHIGVTIKELDLYLAFF 182
Query: 125 INS 127
+ +
Sbjct: 183 VQA 185
>sp|P17923|NFIA_CHICK Nuclear factor 1 A-type OS=Gallus gallus GN=NFIA PE=1 SV=1
Length = 522
Score = 213 bits (543), Expect = 2e-55, Method: Composition-based stats.
Identities = 98/124 (79%), Positives = 111/124 (89%)
Query: 4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
+EK EVKQKWASRLL KLRKDI E REDFVL++TGKKP CVLSNPDQKGKMRRIDCLR
Sbjct: 62 SEKPEVKQKWASRLLAKLRKDIRPEFREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 121
Query: 64 QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
QADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI VSV+ELDLYLA
Sbjct: 122 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 181
Query: 124 YINS 127
++++
Sbjct: 182 FVHA 185
>sp|P09414|NFIA_RAT Nuclear factor 1 A-type OS=Rattus norvegicus GN=Nfia PE=1 SV=2
Length = 509
Score = 213 bits (543), Expect = 2e-55, Method: Composition-based stats.
Identities = 98/124 (79%), Positives = 111/124 (89%)
Query: 4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
+EK EVKQKWASRLL KLRKDI E REDFVL++TGKKP CVLSNPDQKGKMRRIDCLR
Sbjct: 62 SEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 121
Query: 64 QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
QADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI VSV+ELDLYLA
Sbjct: 122 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 181
Query: 124 YINS 127
++++
Sbjct: 182 FVHA 185
>sp|Q12857|NFIA_HUMAN Nuclear factor 1 A-type OS=Homo sapiens GN=NFIA PE=1 SV=2
Length = 509
Score = 213 bits (543), Expect = 2e-55, Method: Composition-based stats.
Identities = 98/124 (79%), Positives = 111/124 (89%)
Query: 4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
+EK EVKQKWASRLL KLRKDI E REDFVL++TGKKP CVLSNPDQKGKMRRIDCLR
Sbjct: 62 SEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 121
Query: 64 QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
QADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI VSV+ELDLYLA
Sbjct: 122 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 181
Query: 124 YINS 127
++++
Sbjct: 182 FVHA 185
>sp|Q02780|NFIA_MOUSE Nuclear factor 1 A-type OS=Mus musculus GN=Nfia PE=1 SV=1
Length = 532
Score = 213 bits (543), Expect = 2e-55, Method: Composition-based stats.
Identities = 98/124 (79%), Positives = 111/124 (89%)
Query: 4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
+EK EVKQKWASRLL KLRKDI E REDFVL++TGKKP CVLSNPDQKGKMRRIDCLR
Sbjct: 85 SEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 144
Query: 64 QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
QADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI VSV+ELDLYLA
Sbjct: 145 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 204
Query: 124 YINS 127
++++
Sbjct: 205 FVHA 208
>sp|Q14938|NFIX_HUMAN Nuclear factor 1 X-type OS=Homo sapiens GN=NFIX PE=1 SV=2
Length = 502
Score = 213 bits (541), Expect = 4e-55, Method: Composition-based stats.
Identities = 95/123 (77%), Positives = 110/123 (89%)
Query: 5 EKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQ 64
EK E+KQKWASRLL KLRKDI E REDFVL+ITGKKP CVLSNPDQKGK+RRIDCLRQ
Sbjct: 63 EKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQ 122
Query: 65 ADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANY 124
ADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI V+++ELDLYLA +
Sbjct: 123 ADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYF 182
Query: 125 INS 127
+++
Sbjct: 183 VHT 185
>sp|P21999|NFIC_PIG Nuclear factor 1 C-type OS=Sus scrofa GN=NFIC PE=3 SV=1
Length = 506
Score = 213 bits (541), Expect = 4e-55, Method: Composition-based stats.
Identities = 99/121 (81%), Positives = 106/121 (87%)
Query: 5 EKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQ 64
EK EVKQKWASRLL KLRKDI ECREDFVL+ITGKK CVLSNPDQKGKMRRIDCLRQ
Sbjct: 64 EKAEVKQKWASRLLAKLRKDIRPECREDFVLAITGKKAPGCVLSNPDQKGKMRRIDCLRQ 123
Query: 65 ADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANY 124
ADKVWRLDLVMVILFK IPLESTDGERL KA +C HP LCV P+HI V+V+ELDLYLA +
Sbjct: 124 ADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYF 183
Query: 125 I 125
+
Sbjct: 184 V 184
>sp|P70257|NFIX_MOUSE Nuclear factor 1 X-type OS=Mus musculus GN=Nfix PE=1 SV=2
Length = 488
Score = 213 bits (541), Expect = 4e-55, Method: Composition-based stats.
Identities = 95/123 (77%), Positives = 110/123 (89%)
Query: 5 EKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQ 64
EK E+KQKWASRLL KLRKDI E REDFVL+ITGKKP CVLSNPDQKGK+RRIDCLRQ
Sbjct: 63 EKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQ 122
Query: 65 ADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANY 124
ADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI V+++ELDLYLA +
Sbjct: 123 ADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYF 182
Query: 125 INS 127
+++
Sbjct: 183 VHT 185
>sp|P08651|NFIC_HUMAN Nuclear factor 1 C-type OS=Homo sapiens GN=NFIC PE=1 SV=2
Length = 508
Score = 212 bits (540), Expect = 4e-55, Method: Composition-based stats.
Identities = 100/121 (82%), Positives = 106/121 (87%)
Query: 5 EKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQ 64
EK EVKQKWASRLL KLRKDI ECREDFVLSITGKK CVLSNPDQKGKMRRIDCLRQ
Sbjct: 64 EKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQ 123
Query: 65 ADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANY 124
ADKVWRLDLVMVILFK IPLESTDGERL KA +C HP LCV P+HI V+V+ELDLYLA +
Sbjct: 124 ADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYF 183
Query: 125 I 125
+
Sbjct: 184 V 184
>sp|P17926|NFIC_CHICK Nuclear factor 1 C-type OS=Gallus gallus GN=NFIC PE=1 SV=1
Length = 439
Score = 211 bits (537), Expect = 1e-54, Method: Composition-based stats.
Identities = 100/122 (81%), Positives = 110/122 (90%)
Query: 4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
+EK EVKQKWASRLL KLRKDI ECREDFVLSITGKKP+ CVLSNPDQKGKMRRIDCLR
Sbjct: 63 SEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKPSCCVLSNPDQKGKMRRIDCLR 122
Query: 64 QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
QADKVWRLDLVMVILFK IPLESTDGERL KA +C +P LC+ P+HI+VSV+ELDLYLA
Sbjct: 123 QADKVWRLDLVMVILFKGIPLESTDGERLVKAGQCTNPILCIQPHHISVSVKELDLYLAY 182
Query: 124 YI 125
++
Sbjct: 183 FV 184
>sp|P13623|NFIX_MESAU Nuclear factor 1 X-type OS=Mesocricetus auratus GN=NFIX PE=2 SV=1
Length = 441
Score = 211 bits (536), Expect = 1e-54, Method: Composition-based stats.
Identities = 95/123 (77%), Positives = 110/123 (89%)
Query: 5 EKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQ 64
EK E+KQKWASRLL KLRKDI E REDFVL+ITGKKP CVLSNPDQKGK+RRIDCLRQ
Sbjct: 63 EKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQ 122
Query: 65 ADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANY 124
ADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI V+++ELDLYLA +
Sbjct: 123 ADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYF 182
Query: 125 INS 127
+++
Sbjct: 183 VHT 185
>sp|P70255|NFIC_MOUSE Nuclear factor 1 C-type OS=Mus musculus GN=Nfic PE=1 SV=1
Length = 439
Score = 210 bits (534), Expect = 2e-54, Method: Composition-based stats.
Identities = 99/121 (81%), Positives = 106/121 (87%)
Query: 5 EKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQ 64
EK EVKQKWASRLL KLRKDI ECREDFVL++TGKK CVLSNPDQKGKMRRIDCLRQ
Sbjct: 64 EKAEVKQKWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQ 123
Query: 65 ADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANY 124
ADKVWRLDLVMVILFK IPLESTDGERL KA CAHP LCV P+HI V+V+ELDLYLA +
Sbjct: 124 ADKVWRLDLVMVILFKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAVKELDLYLAYF 183
Query: 125 I 125
+
Sbjct: 184 V 184
>sp|P14057|NFIL_PIG Nuclear factor 1 (Fragment) OS=Sus scrofa GN=NFI PE=1 SV=1
Length = 231
Score = 209 bits (533), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 99/122 (81%), Positives = 106/122 (86%)
Query: 4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
EK EVKQKWASRLL KLRKDI ECREDFVL+ITGKK CVLSNPDQKGKMRRIDCLR
Sbjct: 60 GEKAEVKQKWASRLLAKLRKDIRPECREDFVLAITGKKAPGCVLSNPDQKGKMRRIDCLR 119
Query: 64 QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
QADKVWRLDLVMVILFK IPLESTDGERL KA +C HP LCV P+HI V+V+ELDLYLA
Sbjct: 120 QADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAY 179
Query: 124 YI 125
++
Sbjct: 180 FV 181
>sp|P97863|NFIB_MOUSE Nuclear factor 1 B-type OS=Mus musculus GN=Nfib PE=1 SV=2
Length = 570
Score = 207 bits (528), Expect = 1e-53, Method: Composition-based stats.
Identities = 96/125 (76%), Positives = 108/125 (86%)
Query: 4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
+EK E+KQKWASRLL KLRKDI QE REDFVL++TGKK CVLSNPDQKGK+RRIDCLR
Sbjct: 63 SEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLR 122
Query: 64 QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
QADKVWRLDLVMVILFK IPLESTDGERL K+P C +P+LCV P+HI VSV+ELDL+LA
Sbjct: 123 QADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAY 182
Query: 124 YINSH 128
Y+
Sbjct: 183 YVQEQ 187
>sp|P13622|NFIB_MESAU Nuclear factor 1 B-type OS=Mesocricetus auratus GN=NFIB PE=2 SV=1
Length = 561
Score = 207 bits (527), Expect = 1e-53, Method: Composition-based stats.
Identities = 96/125 (76%), Positives = 108/125 (86%)
Query: 4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
+EK E+KQKWASRLL KLRKDI QE REDFVL++TGKK CVLSNPDQKGK+RRIDCLR
Sbjct: 63 SEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLR 122
Query: 64 QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
QADKVWRLDLVMVILFK IPLESTDGERL K+P C +P+LCV P+HI VSV+ELDL+LA
Sbjct: 123 QADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAY 182
Query: 124 YINSH 128
Y+
Sbjct: 183 YVQEQ 187
>sp|P17924|NFIB_CHICK Nuclear factor 1 B-type OS=Gallus gallus GN=NFIB PE=1 SV=1
Length = 560
Score = 207 bits (526), Expect = 2e-53, Method: Composition-based stats.
Identities = 96/125 (76%), Positives = 108/125 (86%)
Query: 4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
+EK E+KQKWASRLL KLRKDI QE REDFVL++TGKK CVLSNPDQKGK+RRIDCLR
Sbjct: 63 SEKPEIKQKWASRLLAKLRKDIRQEFREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLR 122
Query: 64 QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
QADKVWRLDLVMVILFK IPLESTDGERL K+P C +P+LCV P+HI VSV+ELDL+LA
Sbjct: 123 QADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAY 182
Query: 124 YINSH 128
Y+
Sbjct: 183 YVQEQ 187
>sp|O00712|NFIB_HUMAN Nuclear factor 1 B-type OS=Homo sapiens GN=NFIB PE=1 SV=2
Length = 420
Score = 204 bits (520), Expect = 9e-53, Method: Composition-based stats.
Identities = 96/125 (76%), Positives = 108/125 (86%)
Query: 4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
+EK E+KQKWASRLL KLRKDI QE REDFVL++TGKK CVLSNPDQKGK+RRIDCLR
Sbjct: 63 SEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLR 122
Query: 64 QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
QADKVWRLDLVMVILFK IPLESTDGERL K+P C +P+LCV P+HI VSV+ELDL+LA
Sbjct: 123 QADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAY 182
Query: 124 YINSH 128
Y+
Sbjct: 183 YVQEQ 187
>sp|Q0VCL6|NFIB_BOVIN Nuclear factor 1 B-type OS=Bos taurus GN=NFIB PE=2 SV=1
Length = 420
Score = 204 bits (520), Expect = 1e-52, Method: Composition-based stats.
Identities = 96/125 (76%), Positives = 108/125 (86%)
Query: 4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
+EK E+KQKWASRLL KLRKDI QE REDFVL++TGKK CVLSNPDQKGK+RRIDCLR
Sbjct: 63 SEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLR 122
Query: 64 QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
QADKVWRLDLVMVILFK IPLESTDGERL K+P C +P+LCV P+HI VSV+ELDL+LA
Sbjct: 123 QADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAY 182
Query: 124 YINSH 128
Y+
Sbjct: 183 YVQEQ 187
>sp|Q72F03|AMPA_DESVH Probable cytosol aminopeptidase OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=pepA PE=3
SV=1
Length = 507
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 69 WRLDLVMVILFKAIPLESTDGERLEKAP 96
WR VMV +FK PL D + +E AP
Sbjct: 13 WRAGAVMVFVFKDEPLAEVDSQLVEAAP 40
>sp|Q8XS05|METE_RALSO 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Ralstonia solanacearum (strain
GMI1000) GN=metE PE=3 SV=1
Length = 776
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 68 VWRLDLVMVILFKAIPLESTDGERLEKAPECA 99
+WR DL L + PL T GERL AP C+
Sbjct: 292 IWRTDLEQA-LARVAPLAQTLGERLWLAPSCS 322
>sp|B2JNZ4|METE_BURP8 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Burkholderia phymatum (strain DSM
17167 / STM815) GN=metE PE=3 SV=1
Length = 763
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 16/94 (17%)
Query: 32 DFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKAIPLESTDGER 91
D V + + P VLS G+ VW+ DL + + PL +T G+R
Sbjct: 275 DEVAQVAAQVPETAVLSVGVINGR-----------NVWKTDLNAALAWLE-PLHATLGDR 322
Query: 92 LEKAPECAHPSLCVNPYHINVSVRELDLYLANYI 125
L AP C SL +P +N S R+LD + +++
Sbjct: 323 LWIAPSC---SLLHSPVDLN-SERKLDADIRSWL 352
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,204,891
Number of Sequences: 539616
Number of extensions: 1752386
Number of successful extensions: 3120
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3101
Number of HSP's gapped (non-prelim): 23
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)