Query psy12031
Match_columns 128
No_of_seqs 25 out of 27
Neff 2.1
Searched_HMMs 46136
Date Fri Aug 16 16:53:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3663|consensus 100.0 1E-89 2.2E-94 596.5 8.6 128 1-128 59-186 (518)
2 smart00523 DWA Domain A in dwa 99.9 5.1E-26 1.1E-30 165.8 6.9 98 10-115 2-107 (109)
3 cd00049 MH1 MH1 is a small DNA 99.9 1.3E-22 2.9E-27 150.1 7.3 97 4-114 14-120 (121)
4 PF03165 MH1: MH1 domain; Int 99.5 2.9E-15 6.2E-20 107.8 2.0 88 11-112 2-101 (103)
5 COG4049 Uncharacterized protei 89.6 0.13 2.9E-06 35.9 0.6 22 79-100 4-25 (65)
6 KOG3701|consensus 87.5 1.2 2.7E-05 39.5 5.3 87 11-114 26-131 (411)
7 KOG0275|consensus 50.9 8.2 0.00018 35.2 1.3 47 18-67 244-303 (508)
8 PF08402 TOBE_2: TOBE domain; 50.3 7.6 0.00016 23.3 0.7 11 103-113 1-11 (75)
9 PF00632 HECT: HECT-domain (ub 48.2 12 0.00027 29.4 1.7 20 22-41 232-251 (317)
10 PF14792 DNA_pol_B_palm: DNA p 46.8 12 0.00025 26.7 1.3 19 43-61 89-107 (112)
11 cd00078 HECTc HECT domain; C-t 45.9 41 0.00089 27.5 4.5 19 23-41 272-290 (352)
12 PF14427 Pput2613-deam: Pput_2 45.0 6.2 0.00013 30.4 -0.3 45 10-59 44-88 (118)
13 PF00325 Crp: Bacterial regula 42.7 19 0.00042 21.6 1.6 12 13-24 18-29 (32)
14 PF01807 zf-CHC2: CHC2 zinc fi 39.1 6 0.00013 27.4 -1.1 38 70-108 12-51 (97)
15 PF05551 zf-His_Me_endon: Zinc 38.0 15 0.00033 27.8 0.8 26 91-117 64-89 (131)
16 PRK13911 exodeoxyribonuclease 35.0 1.1E+02 0.0024 24.3 5.3 72 5-76 114-220 (250)
17 PF13392 HNH_3: HNH endonuclea 33.8 16 0.00036 21.9 0.4 35 75-115 7-41 (46)
18 cd07998 WGR_DNA_ligase WGR dom 32.2 23 0.0005 24.9 0.9 11 64-74 11-21 (77)
19 smart00119 HECTc Domain Homolo 31.7 1.1E+02 0.0024 25.3 4.9 19 23-41 254-272 (336)
20 PF04161 Arv1: Arv1-like famil 30.2 25 0.00055 27.3 0.9 33 56-101 1-33 (208)
21 TIGR00335 primase_sml DNA prim 27.8 50 0.0011 27.4 2.3 23 70-102 246-268 (297)
22 PF09297 zf-NADH-PPase: NADH p 27.8 22 0.00048 20.2 0.2 20 81-100 10-29 (32)
23 cd04756 Commd8 COMM_Domain con 27.5 25 0.00055 27.1 0.5 83 24-122 75-164 (176)
24 smart00025 Pumilio Pumilio-lik 25.1 85 0.0018 16.2 2.2 26 9-34 10-35 (36)
25 PF14726 RTTN_N: Rotatin, an a 22.9 80 0.0017 22.7 2.3 19 14-32 72-90 (98)
26 PRK12286 rpmF 50S ribosomal pr 22.0 59 0.0013 21.4 1.4 18 91-111 26-43 (57)
27 COG1153 FwdD Formylmethanofura 21.9 35 0.00075 26.6 0.3 16 77-92 97-114 (128)
28 PRK00823 phhB pterin-4-alpha-c 21.7 1E+02 0.0022 21.4 2.6 29 99-127 58-94 (97)
29 cd07828 nitrobindin nitrobindi 21.5 77 0.0017 23.6 2.1 45 46-94 102-148 (148)
30 smart00291 ZnF_ZZ Zinc-binding 21.3 46 0.00099 20.1 0.7 17 89-106 16-32 (44)
31 PRK15431 ferrous iron transpor 20.6 49 0.0011 23.5 0.9 23 25-60 28-50 (78)
32 cd02345 ZZ_dah Zinc finger, ZZ 20.2 48 0.001 20.8 0.7 20 89-109 13-32 (49)
No 1
>KOG3663|consensus
Probab=100.00 E-value=1e-89 Score=596.54 Aligned_cols=128 Identities=80% Similarity=1.272 Sum_probs=126.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHhhhcChhhHhhhHhhhcCCCCCeeEeeCCCCCCcccccccccccCeeeehheeeeehhc
Q psy12031 1 TIRNEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFK 80 (128)
Q Consensus 1 ~l~~e~~evK~kWasrLL~KLrKDI~~e~re~Fv~~itg~~~~~CvlSnpDqKGKmRRIDclrQaDKVWRLDlVmviLfk 80 (128)
||+|||||||||||||||+||||||++|+||+||++|+|+||+|||||||||||||||||||||||||||||||||||||
T Consensus 59 ELl~ekpEvKqKWASRLLaKlrKDIr~e~rEdFVltItGkk~p~CVlSnpDQKGKmRRIDCLRQADKVWRLDLVmVILFK 138 (518)
T KOG3663|consen 59 ELLNEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTITGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFK 138 (518)
T ss_pred HHhccchHHHHHHHHHHHHHHHhhcchHHHHHHHhhhcCCCCCceeecCccccCceeehhhhhhhchheeeeeeeEEeec
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccccccCCCCCCCcccccCeeeEEEechhhHHHHHhhhcC
Q psy12031 81 AIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANYINSH 128 (128)
Q Consensus 81 giPLESTDgeRl~k~~~C~~p~LCV~P~Hi~v~vreLDl~lan~~~~~ 128 (128)
||||||||||||+|+++|.||+||||||||+|+||||||||||||++.
T Consensus 139 gIPLESTDGERL~ksp~C~hP~LCVqPhHi~VsVkeLDlylAyfv~~~ 186 (518)
T KOG3663|consen 139 GIPLESTDGERLEKSPQCSHPGLCVQPHHIGVSVKELDLYLAYFVHTV 186 (518)
T ss_pred ccccccCchhhhhcCcccCCCccccccceeeeeehhhhHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999863
No 2
>smart00523 DWA Domain A in dwarfin family proteins.
Probab=99.93 E-value=5.1e-26 Score=165.77 Aligned_cols=98 Identities=28% Similarity=0.517 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhhhcChhhHhhhHhhhcCCC--CCeeEeeCCCCCCcccccccccccCeeeehheeeeehhcccccccC
Q psy12031 10 KQKWASRLLGKLRKDITQECREDFVLSITGKK--PAMCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKAIPLEST 87 (128)
Q Consensus 10 K~kWasrLL~KLrKDI~~e~re~Fv~~itg~~--~~~CvlSnpDqKGKmRRIDclrQaDKVWRLDlVmviLfkgiPLEST 87 (128)
++|||++++.+|.|++..+..|+|+++|+++. |..||+++++++|||++ ||++|+++++|..||++.+|+|
T Consensus 2 ~ek~~~k~~~sL~KklK~k~le~L~~AV~s~g~~~t~CV~i~~~~dgrl~~------~~~~~~phvi~crLfRWpdL~s- 74 (109)
T smart00523 2 EEKWAKKATESLLKKLKKKQLEELLQAVESKGGPPTRCVLIPRSLDGRLQV------AHRKGLPHVLYCRLFRWPDLQS- 74 (109)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEeCcccCccccc------ccCCCCCcEEEEEEeeCCCCCC-
Confidence 58999999999999999999999999999665 67999999999999988 8999999999999999999999
Q ss_pred cccccccCCCCCCCc------ccccCeeeEEEec
Q psy12031 88 DGERLEKAPECAHPS------LCVNPYHINVSVR 115 (128)
Q Consensus 88 DgeRl~k~~~C~~p~------LCV~P~Hi~v~vr 115 (128)
+++|.+.+.|.+|. .||||||++..++
T Consensus 75 -~~eLk~l~~C~~~~~~~~~~vC~NPyHy~rv~~ 107 (109)
T smart00523 75 -PHELKALPTCEHAFESKSDEVCCNPYHYSRVER 107 (109)
T ss_pred -HHHceecccCCCcccCCCCeEEeCCceEEEeec
Confidence 99999999999998 9999999998764
No 3
>cd00049 MH1 MH1 is a small DNA binding domain, binding in an unusal way involving a beta hairpin structure binding to the major groove. MH1 is present in Smad proteins, an important family of proteins involved in TGF-beta signalling and frequent targets of tumorigenic mutations. Also known as Domain A in dwarfin family proteins.
Probab=99.87 E-value=1.3e-22 Score=150.07 Aligned_cols=97 Identities=37% Similarity=0.498 Sum_probs=87.5
Q ss_pred chhHHHHHHHHHHHHHHHhhhcChhhHhhhHhhhcCCCCCeeEeeCC-CCCCcc--cccccccccCeeeeh-heeeeehh
Q psy12031 4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNP-DQKGKM--RRIDCLRQADKVWRL-DLVMVILF 79 (128)
Q Consensus 4 ~e~~evK~kWasrLL~KLrKDI~~e~re~Fv~~itg~~~~~CvlSnp-DqKGKm--RRIDclrQaDKVWRL-DlVmviLf 79 (128)
+|.++.++||+++||+||+|++..|..+.||.+..|. |..||++++ |+|++| |++++..+++||||. ||.+.+
T Consensus 14 ~~~e~~~~k~~~sLlKkLKk~~~le~L~~AV~s~g~~-~t~CV~i~r~D~rl~~~~r~~~phv~~crlwRWpDL~~~~-- 90 (121)
T cd00049 14 GEEEKWKKKAAESLLKKLKKKIQLEELEDAVESRGGP-PTRCVLIPRSDGRLQVSHRKGLPHVIYCRVWRWPDLRSNH-- 90 (121)
T ss_pred cchHHHHHHHHHHHHHHHhcccCHHHHHHHHHcCCCC-CCCeEEeccccccccccccCCCcceEEEeeeeccccCchH--
Confidence 3678999999999999999999999999999999886 466888765 999999 999999999999999 999965
Q ss_pred cccccccCcccccccCCCCCCC------cccccCeeeEEEe
Q psy12031 80 KAIPLESTDGERLEKAPECAHP------SLCVNPYHINVSV 114 (128)
Q Consensus 80 kgiPLESTDgeRl~k~~~C~~p------~LCV~P~Hi~v~v 114 (128)
+|.+-+.|.++ ..||||||++..+
T Consensus 91 -----------eLk~l~~C~~~~~~~~~~vC~NPyHy~rv~ 120 (121)
T cd00049 91 -----------ELKRLETCEHAFDSKPDEVCINPYHYSRVV 120 (121)
T ss_pred -----------hheeCccCCCccccCCCeEEeCCceeeeec
Confidence 78888899887 7999999999865
No 4
>PF03165 MH1: MH1 domain; InterPro: IPR003619 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth []. The dwarfin family also includes the Drosophila protein MAD that is required for the function of decapentaplegic (DPP) and may play a role in DPP signalling. Drosophila Mad binds to DNA and directly mediates activation of vestigial by Dpp []. This domain is also found in nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF). This entry represents the MH1 (MAD homology 1) domain is found at the amino terminus of MAD related proteins such as Smads. This domain is separated from the MH2 domain by a non-conserved linker region. The crystal structure of the MH1 domain shows that a highly conserved 11 residue beta hairpin is used to bind the DNA consensus sequence GNCN in the major groove, shown to be vital for the transcriptional activation of target genes. Not all examples of MH1 can bind to DNA however. Smad2 cannot bind DNA and has a large insertion within the hairpin that presumably abolishes DNA binding. A basic helix (H2) in MH1 with the nuclear localisation signal KKLKK has been shown to be essential for Smad3 nuclear import. Smads also use the MH1 domain to interact with transcription factors such as Jun, TFE3, Sp1, and Runx [, , ].; GO: 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3QSV_A 1MHD_A 1OZJ_A 3KMP_B.
Probab=99.53 E-value=2.9e-15 Score=107.75 Aligned_cols=88 Identities=30% Similarity=0.508 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhhcChhhHhhhHhhhc--CCCCCeeEee---------CCCCCCcccccccccccCeeeeh-heeeeeh
Q psy12031 11 QKWASRLLGKLRKDITQECREDFVLSIT--GKKPAMCVLS---------NPDQKGKMRRIDCLRQADKVWRL-DLVMVIL 78 (128)
Q Consensus 11 ~kWasrLL~KLrKDI~~e~re~Fv~~it--g~~~~~CvlS---------npDqKGKmRRIDclrQaDKVWRL-DlVmviL 78 (128)
+||+.+||+||+|++ +..|+|+.+|+ |..+..||.. ++++||.+..|.| |+||. ||.+..-
T Consensus 2 ~k~~~sLlkkLK~~~--~~le~L~~Av~s~g~~~t~CV~i~r~~dgrl~v~~~k~~phvl~c-----rlwRwpdL~~~~e 74 (103)
T PF03165_consen 2 EKAIKSLLKKLKKKI--GQLEELLKAVESRGDPPTKCVTIPRSLDGRLQVSGRKGLPHVLYC-----RLWRWPDLRHSHE 74 (103)
T ss_dssp HHHHHHHHHHHTTTC--THHHHHHHHHHCTTTSTS---EEE--TTS-EEETTEEE-HHHHHH-----HHHT-TT--SCCC
T ss_pred hHHHHHHHHHHcccc--chHHHHHHHHhcCCCCCCCcEEecCccCccccccccccCceEEEE-----EEechhhcCCHHh
Confidence 699999999999998 89999999999 8888889854 5789999999999 99999 9999999
Q ss_pred hcccccccCcccccccCCCCCCCcccccCeeeEE
Q psy12031 79 FKAIPLESTDGERLEKAPECAHPSLCVNPYHINV 112 (128)
Q Consensus 79 fkgiPLESTDgeRl~k~~~C~~p~LCV~P~Hi~v 112 (128)
+|.+|...+.++ + .+...|+||||.+.
T Consensus 75 Lk~l~~C~~~~~-~------~~~~vC~NPyHy~r 101 (103)
T PF03165_consen 75 LKRLPHCRFAFD-S------KNDEVCCNPYHYSR 101 (103)
T ss_dssp EEE-TT-TT-GG-G--------SEEE--GGGEEE
T ss_pred cccCCCCCChhh-c------CCCCEEeCCcEeee
Confidence 998888776632 1 12359999999975
No 5
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=89.60 E-value=0.13 Score=35.88 Aligned_cols=22 Identities=36% Similarity=0.756 Sum_probs=20.6
Q ss_pred hcccccccCcccccccCCCCCC
Q psy12031 79 FKAIPLESTDGERLEKAPECAH 100 (128)
Q Consensus 79 fkgiPLESTDgeRl~k~~~C~~ 100 (128)
||+|-.+|.|||.+.+|+-|..
T Consensus 4 ~KA~Kv~~RDGE~~lrCPRC~~ 25 (65)
T COG4049 4 LKAIKVRDRDGEEFLRCPRCGM 25 (65)
T ss_pred ceeeEeeccCCceeeeCCchhH
Confidence 8999999999999999999964
No 6
>KOG3701|consensus
Probab=87.46 E-value=1.2 Score=39.52 Aligned_cols=87 Identities=26% Similarity=0.504 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhhcChhh--HhhhHhhhc--CCCCCeeEeeCCCCCCccccccccccc-----------Ceeeehheee
Q psy12031 11 QKWASRLLGKLRKDITQEC--REDFVLSIT--GKKPAMCVLSNPDQKGKMRRIDCLRQA-----------DKVWRLDLVM 75 (128)
Q Consensus 11 ~kWasrLL~KLrKDI~~e~--re~Fv~~it--g~~~~~CvlSnpDqKGKmRRIDclrQa-----------DKVWRLDlVm 75 (128)
.+||++.+..|-|-+.... -|+.+.+++ |.++..||.-- |+.|+==|- =||||---+
T Consensus 26 e~~~~ka~~slvkklk~~~~~le~l~~av~s~g~~~~~Cvtip-------rslD~Rlq~~~rkg~Phviy~rlwRwpdl- 97 (411)
T KOG3701|consen 26 EKFAEKAVESLVKKLKDKKGELENLIKAVESPGTKPTGCVTIP-------RSLDGRLQVAHRKGFPHVIYCRLWRWPDL- 97 (411)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHhcCCCCCCCceEECC-------CCCCccccccCCCCCCceEEEEeeccccc-
Confidence 4666655544444444333 566666665 66778888654 555543333 378886321
Q ss_pred eehhcccccccC-cccccccCCCCCCC---cccccCeeeEEEe
Q psy12031 76 VILFKAIPLEST-DGERLEKAPECAHP---SLCVNPYHINVSV 114 (128)
Q Consensus 76 viLfkgiPLEST-DgeRl~k~~~C~~p---~LCV~P~Hi~v~v 114 (128)
.++ ---+|+-|+.|.+- .-|+||||.+-..
T Consensus 98 ---------~~~~elk~l~~C~~a~~~~~~~vC~NPyHy~rv~ 131 (411)
T KOG3701|consen 98 ---------QKNHELKRLECCEHAFESKSDNVCINPYHYSRVE 131 (411)
T ss_pred ---------ccchhheecccCCccccCCCCCeeeCCcccceee
Confidence 222 33456666666321 3699999987543
No 7
>KOG0275|consensus
Probab=50.87 E-value=8.2 Score=35.15 Aligned_cols=47 Identities=38% Similarity=0.843 Sum_probs=31.4
Q ss_pred HHHHhhhcChhhHhhhHhhhcCCCCCeeE--------eeCCCCCCcc--ccc---ccccccCe
Q psy12031 18 LGKLRKDITQECREDFVLSITGKKPAMCV--------LSNPDQKGKM--RRI---DCLRQADK 67 (128)
Q Consensus 18 L~KLrKDI~~e~re~Fv~~itg~~~~~Cv--------lSnpDqKGKm--RRI---DclrQaDK 67 (128)
-+|||||+.-...++|..- ..+.-|+ +...-|.||+ -|| +|||.-|+
T Consensus 244 ~GKlrKDLkYQAqd~fMMm---d~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdr 303 (508)
T KOG0275|consen 244 TGKLRKDLKYQAQDNFMMM---DDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDR 303 (508)
T ss_pred cchhhhhhhhhhhcceeec---ccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhh
Confidence 4899999999999999653 2334454 4456688875 244 57775554
No 8
>PF08402 TOBE_2: TOBE domain; InterPro: IPR013611 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum (e.g. P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT). Found in ABC transporters immediately after the ATPase domain. A strong RPE motif is found at the presumed N terminus of the domain. ; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1Q12_A 1Q1B_C 2AWN_D 3RLF_B 3PUX_B 2R6G_B 3PUV_B 1Q1E_A 3PV0_B 2AWO_A ....
Probab=50.28 E-value=7.6 Score=23.28 Aligned_cols=11 Identities=36% Similarity=0.576 Sum_probs=8.7
Q ss_pred ccccCeeeEEE
Q psy12031 103 LCVNPYHINVS 113 (128)
Q Consensus 103 LCV~P~Hi~v~ 113 (128)
|||+|.||+++
T Consensus 1 l~iRPE~i~l~ 11 (75)
T PF08402_consen 1 LGIRPEDIRLS 11 (75)
T ss_dssp EEE-GGGEEEE
T ss_pred CEECcceeEEE
Confidence 68999999985
No 9
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=48.22 E-value=12 Score=29.36 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=16.4
Q ss_pred hhhcChhhHhhhHhhhcCCC
Q psy12031 22 RKDITQECREDFVLSITGKK 41 (128)
Q Consensus 22 rKDI~~e~re~Fv~~itg~~ 41 (128)
-.+..++.|..|++-+||..
T Consensus 232 l~~~s~~~~~~fL~F~TG~~ 251 (317)
T PF00632_consen 232 LEEFSQEERRKFLRFVTGSS 251 (317)
T ss_dssp HHHS-HHHHHHHHHHHHSSS
T ss_pred eccCCHHHhheeEEEecCCC
Confidence 35588999999999999984
No 10
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A ....
Probab=46.77 E-value=12 Score=26.68 Aligned_cols=19 Identities=42% Similarity=0.695 Sum_probs=13.6
Q ss_pred CeeEeeCCCCCCccccccc
Q psy12031 43 AMCVLSNPDQKGKMRRIDC 61 (128)
Q Consensus 43 ~~CvlSnpDqKGKmRRIDc 61 (128)
..|.+++.+++++.||||-
T Consensus 89 G~~~l~~~~~~~~~RRiDi 107 (112)
T PF14792_consen 89 GVCRLPGNDNKSPHRRIDI 107 (112)
T ss_dssp EEEE-SSTSST--EEEEEE
T ss_pred eEeecCCCCCCCCeeeEEE
Confidence 4599999999999999984
No 11
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=45.89 E-value=41 Score=27.50 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=17.3
Q ss_pred hhcChhhHhhhHhhhcCCC
Q psy12031 23 KDITQECREDFVLSITGKK 41 (128)
Q Consensus 23 KDI~~e~re~Fv~~itg~~ 41 (128)
.+..+|.|..|++-+||..
T Consensus 272 ~~~s~eer~~fL~F~TG~~ 290 (352)
T cd00078 272 ESFTNEERKKFLQFVTGSS 290 (352)
T ss_pred HhCCHHHHHHhheeecCCC
Confidence 4699999999999999984
No 12
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=45.03 E-value=6.2 Score=30.38 Aligned_cols=45 Identities=24% Similarity=0.343 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhhcChhhHhhhHhhhcCCCCCeeEeeCCCCCCccccc
Q psy12031 10 KQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRI 59 (128)
Q Consensus 10 K~kWasrLL~KLrKDI~~e~re~Fv~~itg~~~~~CvlSnpDqKGKmRRI 59 (128)
+|.||.--=+|+-++|.....--=++.|-|.-|+| |-=||||||-
T Consensus 44 ~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC-----~~CkG~Mr~~ 88 (118)
T PF14427_consen 44 ESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPC-----NSCKGKMRRA 88 (118)
T ss_pred hhhhhhhhHhHHHhhcCccccCCceEEEeeecCCC-----chhHHHHHHh
Confidence 46788888888888887766433456799999987 2459999985
No 13
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=42.67 E-value=19 Score=21.56 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhh
Q psy12031 13 WASRLLGKLRKD 24 (128)
Q Consensus 13 WasrLL~KLrKD 24 (128)
=+||+|+||+++
T Consensus 18 TVSR~l~~l~~~ 29 (32)
T PF00325_consen 18 TVSRILKKLERQ 29 (32)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 379999999875
No 14
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=39.15 E-value=6 Score=27.40 Aligned_cols=38 Identities=34% Similarity=0.372 Sum_probs=21.8
Q ss_pred ehheeeeehhcccccccCcccccccCCCC--CCCcccccCe
Q psy12031 70 RLDLVMVILFKAIPLESTDGERLEKAPEC--AHPSLCVNPY 108 (128)
Q Consensus 70 RLDlVmviLfkgiPLESTDgeRl~k~~~C--~~p~LCV~P~ 108 (128)
|+|++.++=-. ++|.++-++-...|+.| .+|++.|+|.
T Consensus 12 ~~~i~~v~~~~-~~l~~~G~~~~~~CPfH~d~~pS~~i~~~ 51 (97)
T PF01807_consen 12 RIDIVDVIERY-IKLKRRGREYRCLCPFHDDKTPSFSINPD 51 (97)
T ss_dssp CS-HHHHHCCC-S--EEETTEEEE--SSS--SS--EEEETT
T ss_pred hCCHHHHHHHh-ccccccCCeEEEECcCCCCCCCceEEECC
Confidence 35666655444 78888866777889998 5688998884
No 15
>PF05551 zf-His_Me_endon: Zinc-binding loop region of homing endonuclease; InterPro: IPR008704 This entry consists of several putative homing endonuclease proteins of around 245 residues in length which appear to be found exclusively in some fungi and in Naegleria species. The proteins belong to the His-Me finger endonucleases superfamily. The exact function of these proteins are unknown.; PDB: 1IPP_B 1CZ0_A 1EVX_B 1CYQ_A 1EVW_A 1A73_B 1A74_A 2O6M_A.
Probab=38.03 E-value=15 Score=27.77 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=17.5
Q ss_pred ccccCCCCCCCcccccCeeeEEEechh
Q psy12031 91 RLEKAPECAHPSLCVNPYHINVSVREL 117 (128)
Q Consensus 91 Rl~k~~~C~~p~LCV~P~Hi~v~vreL 117 (128)
.++-++-|.+. .|+||.|+.+..+.+
T Consensus 64 ~~~iSHlC~~~-~C~nP~Hlv~E~~~~ 89 (131)
T PF05551_consen 64 ALEISHLCHNK-RCFNPDHLVIEPKTQ 89 (131)
T ss_dssp EEEEEETT--T-TB--GGGEEEEEHHH
T ss_pred cCEEeeccCCC-CcCCCCeEeecchhh
Confidence 56778999984 999999999876544
No 16
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=35.01 E-value=1.1e+02 Score=24.28 Aligned_cols=72 Identities=15% Similarity=0.285 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHHhh--------------------hc------------ChhhHhhhHhhhcCCCCCeeEeeCCCC
Q psy12031 5 EKVEVKQKWASRLLGKLRK--------------------DI------------TQECREDFVLSITGKKPAMCVLSNPDQ 52 (128)
Q Consensus 5 e~~evK~kWasrLL~KLrK--------------------DI------------~~e~re~Fv~~itg~~~~~CvlSnpDq 52 (128)
|+-+.|.+|-..|..-|.+ |+ .||.|++|-..+...=-+..-.-||+.
T Consensus 114 ~r~~~K~~~~~~~~~~l~~l~~~~~~Ii~GD~Nva~~~~D~~~~~~~~~~~gf~~~er~~f~~~l~~gl~D~~R~~~p~~ 193 (250)
T PRK13911 114 SRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYPNK 193 (250)
T ss_pred cchHHHHHHHHHHHHHHHhcccCCCEEEEccccCCCChhhccChhhcCCCCCcCHHHHHHHHHHHhcCCeehhhhhCCCC
Confidence 5667889997766655542 22 345788887766543333334556765
Q ss_pred CCcccccc---cccccCeeeehheeee
Q psy12031 53 KGKMRRID---CLRQADKVWRLDLVMV 76 (128)
Q Consensus 53 KGKmRRID---clrQaDKVWRLDlVmv 76 (128)
+|..-=-+ --++...=||+|.+.+
T Consensus 194 ~~~yTww~~~~~~~~~n~g~RIDyilv 220 (250)
T PRK13911 194 EKAYTWWSYMQQARDKNIGWRIDYFLC 220 (250)
T ss_pred CCCCccCCCcCCccccCCcceEEEEEE
Confidence 44321101 0244577889998853
No 17
>PF13392 HNH_3: HNH endonuclease; PDB: 1U3E_M.
Probab=33.79 E-value=16 Score=21.92 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=18.2
Q ss_pred eeehhcccccccCcccccccCCCCCCCcccccCeeeEEEec
Q psy12031 75 MVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVR 115 (128)
Q Consensus 75 mviLfkgiPLESTDgeRl~k~~~C~~p~LCV~P~Hi~v~vr 115 (128)
+...|.| |+. +|.-+ -+.|.++ .|.+|.|+...-+
T Consensus 7 v~~~~~g-~~p--~~~~v--~H~~~~~-~~n~~~NL~~~t~ 41 (46)
T PF13392_consen 7 VWEAFHG-PIP--EGYVV--DHKDGNK-TDNRPENLRWVTR 41 (46)
T ss_dssp HHHHH-T-T----TT-EE--EETTS-T-T---GGGEEEE-H
T ss_pred HHHHhcC-CCC--CCCEE--EeCCCCC-CCCCHHHceECCH
Confidence 4457888 666 45433 4889997 9999999987543
No 18
>cd07998 WGR_DNA_ligase WGR domain of bacterial DNA ligases. The WGR domain is found in a small family of predicted bacterial DNA ligases. It has been called WGR after the most conserved central motif of the domain. The domain typically occurs in together with an ATP-dependent DNA ligase domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain.
Probab=32.22 E-value=23 Score=24.94 Aligned_cols=11 Identities=45% Similarity=0.854 Sum_probs=10.0
Q ss_pred ccCeeeehhee
Q psy12031 64 QADKVWRLDLV 74 (128)
Q Consensus 64 QaDKVWRLDlV 74 (128)
.|||||.+++.
T Consensus 11 ~S~Kfyev~~~ 21 (77)
T cd07998 11 NSDKVYEVDLF 21 (77)
T ss_pred CCceEEEEEEE
Confidence 58999999988
No 19
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=31.69 E-value=1.1e+02 Score=25.31 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=17.4
Q ss_pred hhcChhhHhhhHhhhcCCC
Q psy12031 23 KDITQECREDFVLSITGKK 41 (128)
Q Consensus 23 KDI~~e~re~Fv~~itg~~ 41 (128)
.+..+|.|..|++-+||+.
T Consensus 254 ~~~s~ee~~~fL~F~TG~~ 272 (336)
T smart00119 254 ESFTNEERRKLLQFVTGSS 272 (336)
T ss_pred HHCCHHHHHHhheeccCCC
Confidence 5799999999999999984
No 20
>PF04161 Arv1: Arv1-like family ; InterPro: IPR007290 Arv1 is a transmembrane protein, with potential zinc-binding motifs, that mediates sterol homeostasis. Its action is important in lipid homeostasis, which prevents free sterol toxicity []. Arv1 contains a homology domain (AHD), which consists of an N-terminal cysteine-rich subdomain with a putative zinc-binding motif, followed by a C-terminal subdomain of 33 amino acids. The C-terminal subdomain of the AHD is critical for the protein's function []. In yeast, Arv1p is important for the delivery of an early glycosylphosphatidylinositol GPI intermediate, GlcN-acylPI, to the first mannosyltransferase of GPI synthesis in the ER lumen []. It is important for the traffic of sterol in yeast and in humans. In eukaryotic cells, it may fuction in the sphingolipid metabolic pathway as a transporter of ceramides between the ER and Golgi [].
Probab=30.19 E-value=25 Score=27.33 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=23.0
Q ss_pred ccccccccccCeeeehheeeeehhcccccccCcccccccCCCCCCC
Q psy12031 56 MRRIDCLRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHP 101 (128)
Q Consensus 56 mRRIDclrQaDKVWRLDlVmviLfkgiPLESTDgeRl~k~~~C~~p 101 (128)
|+=|-|..-++-++|- . |.+..||.+|+.|.+.
T Consensus 1 miCIeCg~~v~~Ly~~----------Y---s~~~irLt~C~~C~~v 33 (208)
T PF04161_consen 1 MICIECGHPVKSLYRQ----------Y---SPGNIRLTKCPNCGKV 33 (208)
T ss_pred CEeccCCCcchhhhhc----------c---CCCcEEEeeccccCCc
Confidence 5556676666654331 1 6778999999999875
No 21
>TIGR00335 primase_sml DNA primase, eukaryotic-type, small subunit, putative. This model is named putative because the assignment is putative for archaeal proteins. Eukaryotic proteins scoring above the trusted cutoff can be considered authentic.
Probab=27.82 E-value=50 Score=27.43 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.5
Q ss_pred ehheeeeehhcccccccCcccccccCCCCCCCc
Q psy12031 70 RLDLVMVILFKAIPLESTDGERLEKAPECAHPS 102 (128)
Q Consensus 70 RLDlVmviLfkgiPLESTDgeRl~k~~~C~~p~ 102 (128)
|||..+ |.|-.||-|++.|-||.
T Consensus 246 ~lD~~V----------t~d~~rLLr~P~slH~k 268 (297)
T TIGR00335 246 VLDDKV----------TLDRIRLLRHPKSLHRV 268 (297)
T ss_pred eeccee----------eecchhhhcCCcccCCC
Confidence 888877 78999999999999985
No 22
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=27.82 E-value=22 Score=20.24 Aligned_cols=20 Identities=25% Similarity=0.665 Sum_probs=13.7
Q ss_pred ccccccCcccccccCCCCCC
Q psy12031 81 AIPLESTDGERLEKAPECAH 100 (128)
Q Consensus 81 giPLESTDgeRl~k~~~C~~ 100 (128)
|=|++++++++--.|+.|.+
T Consensus 10 G~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 10 GAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp --BEEE-SSSS-EEESSSS-
T ss_pred CccccCCCCcCEeECCCCcC
Confidence 67889999999999999976
No 23
>cd04756 Commd8 COMM_Domain containing protein 8. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=27.46 E-value=25 Score=27.08 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=49.2
Q ss_pred hcChhhHhhhHhhhcCCCCCe-eEeeCCCCCCcccccccccccCeeeehheeeeehhcccccccCcccccccCCCCCCCc
Q psy12031 24 DITQECREDFVLSITGKKPAM-CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPS 102 (128)
Q Consensus 24 DI~~e~re~Fv~~itg~~~~~-CvlSnpDqKGKmRRIDclrQaDKVWRLDlVmviLfkgiPLESTDgeRl~k~~~C~~p~ 102 (128)
.+++++.+.|+.++...++.. -.+. .+.+.|.--+=-|-=||+|++| |.|.-+=.+.|.|.- .
T Consensus 75 ~L~~~~~~a~~~~~~~~~~ei~~~L~-----~~~~~is~~~L~d~dWrv~l~l----------SSd~~~~l~~P~~~L-~ 138 (176)
T cd04756 75 DLSSSHQEALLKCVKSRKEEIRQALV-----NKTNSISSAQLQDFDWQLKLAL----------SSDKLSSLQEPLLNL-D 138 (176)
T ss_pred cCCHHHHHHHHHHHHHhhHHHHHHHH-----HHHhccCchhhccccCeeeeee----------chhhHHHhcCCeEEE-E
Confidence 366777777777776665541 1110 1122122222234449999999 445444456676644 2
Q ss_pred cc------ccCeeeEEEechhhHHHH
Q psy12031 103 LC------VNPYHINVSVRELDLYLA 122 (128)
Q Consensus 103 LC------V~P~Hi~v~vreLDl~la 122 (128)
|. +.|.++.++..+|+-|+.
T Consensus 139 L~v~~~~~~~~v~~Ems~eel~~li~ 164 (176)
T cd04756 139 LDVKENGILKPVSIEMNKEELQNLIS 164 (176)
T ss_pred EEecCCCCeeEEEEEEcHHHHHHHHH
Confidence 44 457889999999998875
No 24
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=25.05 E-value=85 Score=16.25 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhhcChhhHhhhH
Q psy12031 9 VKQKWASRLLGKLRKDITQECREDFV 34 (128)
Q Consensus 9 vK~kWasrLL~KLrKDI~~e~re~Fv 34 (128)
.+.+.+|+++.|+-+-.+++.|+.++
T Consensus 10 ~~~~~g~~viqk~l~~~~~~~~~~i~ 35 (36)
T smart00025 10 SKDQYGNRVVQKLLEHASESQREQII 35 (36)
T ss_pred HhcchhhHHHHHHHHHCCHHHHHHhh
Confidence 45688999999999988888777654
No 25
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=22.86 E-value=80 Score=22.74 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhcChhhHhh
Q psy12031 14 ASRLLGKLRKDITQECRED 32 (128)
Q Consensus 14 asrLL~KLrKDI~~e~re~ 32 (128)
|.++|.|||+++.|+.+..
T Consensus 72 ~~~fL~klr~~~~~~~~~~ 90 (98)
T PF14726_consen 72 AVRFLSKLRPNVEPNLQAE 90 (98)
T ss_pred HHHHHHHHHhcCCHHHHHH
Confidence 5688999999999987654
No 26
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=21.99 E-value=59 Score=21.40 Aligned_cols=18 Identities=28% Similarity=0.628 Sum_probs=14.0
Q ss_pred ccccCCCCCCCcccccCeeeE
Q psy12031 91 RLEKAPECAHPSLCVNPYHIN 111 (128)
Q Consensus 91 Rl~k~~~C~~p~LCV~P~Hi~ 111 (128)
-|+.|++|.++ ..|||+.
T Consensus 26 ~l~~C~~CG~~---~~~H~vC 43 (57)
T PRK12286 26 GLVECPNCGEP---KLPHRVC 43 (57)
T ss_pred cceECCCCCCc---cCCeEEC
Confidence 35889999887 6688875
No 27
>COG1153 FwdD Formylmethanofuran dehydrogenase subunit D [Energy production and conversion]
Probab=21.86 E-value=35 Score=26.64 Aligned_cols=16 Identities=50% Similarity=0.694 Sum_probs=12.4
Q ss_pred ehhccccc--ccCccccc
Q psy12031 77 ILFKAIPL--ESTDGERL 92 (128)
Q Consensus 77 iLfkgiPL--ESTDgeRl 92 (128)
=.|||||. |-||+|+.
T Consensus 97 P~fKgipv~ie~tdee~v 114 (128)
T COG1153 97 PGFKGIPVEVEPTDEEEV 114 (128)
T ss_pred cccCCceEEEEeCCCccc
Confidence 47999995 67888854
No 28
>PRK00823 phhB pterin-4-alpha-carbinolamine dehydratase; Validated
Probab=21.65 E-value=1e+02 Score=21.36 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=23.9
Q ss_pred CCCcccccCeeeEEEe--------chhhHHHHHhhhc
Q psy12031 99 AHPSLCVNPYHINVSV--------RELDLYLANYINS 127 (128)
Q Consensus 99 ~~p~LCV~P~Hi~v~v--------reLDl~lan~~~~ 127 (128)
.||.+++....+.|++ .+.|+-||..|-+
T Consensus 58 HHP~i~~~~~~V~v~l~Th~~~glT~~D~~lA~~id~ 94 (97)
T PRK00823 58 HHPDWFNVYNRVTVTLTTHDAGGLTENDFILAAKIDA 94 (97)
T ss_pred CCCCEEEEcCEEEEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 6899999999988875 6789999987753
No 29
>cd07828 nitrobindin nitrobindin heme-binding domain. Nitrobindin is a heme-containing lipocalin that may reversibly bind nitric oxide. This heme-binding domain forms a beta barrel structure, and in a small family of proteins from tetrapods, it is found C-terminal to a THAP zinc finger domain (a sequence-specific DNA binding domain). Members of this group are putatively related to fatty acid-binding proteins (FABPs).
Probab=21.53 E-value=77 Score=23.59 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=34.6
Q ss_pred EeeCCCC--CCcccccccccccCeeeehheeeeehhcccccccCccccccc
Q psy12031 46 VLSNPDQ--KGKMRRIDCLRQADKVWRLDLVMVILFKAIPLESTDGERLEK 94 (128)
Q Consensus 46 vlSnpDq--KGKmRRIDclrQaDKVWRLDlVmviLfkgiPLESTDgeRl~k 94 (128)
|.++|.. -.+..|.-.|..-+=-|..|..+.+ =||..++..+|.|
T Consensus 102 i~rt~~a~~~~~~~R~~~l~~~~L~~~~~~~~~~----~~l~~h~s~~L~r 148 (148)
T cd07828 102 VARTSFAPEVTAAKRLYGLVDGTLSYTVDMATVG----QPLTHHLSARLKR 148 (148)
T ss_pred EEEcCCcccccceEEEEEEeCCeEEEEEEeeeCC----CCCceeEeeEEeC
Confidence 6677774 7778888888777777888877654 7899999888764
No 30
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=21.34 E-value=46 Score=20.11 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=14.4
Q ss_pred ccccccCCCCCCCccccc
Q psy12031 89 GERLEKAPECAHPSLCVN 106 (128)
Q Consensus 89 geRl~k~~~C~~p~LCV~ 106 (128)
|.|. +|..|.+..||.+
T Consensus 16 g~ry-~C~~C~d~dlC~~ 32 (44)
T smart00291 16 GVRY-HCLVCPDYDLCQS 32 (44)
T ss_pred CCEE-ECCCCCCccchHH
Confidence 6777 8999999999975
No 31
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=20.58 E-value=49 Score=23.50 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=15.4
Q ss_pred cChhhHhhhHhhhcCCCCCeeEeeCCCCCCcccccc
Q psy12031 25 ITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRID 60 (128)
Q Consensus 25 I~~e~re~Fv~~itg~~~~~CvlSnpDqKGKmRRID 60 (128)
.+++-.|+.+.-++ .|||++||+
T Consensus 28 ~p~~~VeaMLe~l~-------------~kGkverv~ 50 (78)
T PRK15431 28 TPQPMINAMLQQLE-------------SMGKAVRIQ 50 (78)
T ss_pred cCHHHHHHHHHHHH-------------HCCCeEeec
Confidence 45555566555554 589999995
No 32
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=20.25 E-value=48 Score=20.76 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=16.3
Q ss_pred ccccccCCCCCCCcccccCee
Q psy12031 89 GERLEKAPECAHPSLCVNPYH 109 (128)
Q Consensus 89 geRl~k~~~C~~p~LCV~P~H 109 (128)
|-|. +|..|.+..||.+=|.
T Consensus 13 g~R~-~C~~C~dydLC~~Cf~ 32 (49)
T cd02345 13 GIRF-PCQVCRDYSLCLGCYT 32 (49)
T ss_pred EeeE-ECCCCCCcCchHHHHh
Confidence 6777 8999999999986544
Done!