Query psy12033
Match_columns 79
No_of_seqs 100 out of 272
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 16:56:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tdu_A DCN1-like protein 1; E2 100.0 3.5E-30 1.2E-34 180.2 3.2 69 2-79 96-164 (200)
2 4gba_A DCN1-like protein 3; E3 100.0 4.6E-30 1.6E-34 182.0 3.7 73 2-79 97-170 (221)
3 3kev_A Galieria sulfuraria DCU 100.0 1.2E-29 4E-34 177.5 4.2 68 2-79 98-165 (199)
4 3bq3_A Defective in cullin ned 99.9 7.3E-29 2.5E-33 179.7 2.9 74 2-79 165-239 (270)
5 1mhm_B Adometdc, samdc, S-aden 55.0 6.6 0.00023 22.9 1.8 19 59-77 35-53 (72)
6 1uhu_A Product of riken cDNA 3 45.5 53 0.0018 20.4 5.7 47 17-63 52-100 (105)
7 1j2z_A Acyl-[acyl-carrier-prot 39.2 45 0.0015 22.6 4.4 20 44-66 238-257 (270)
8 4e6u_A Acyl-[acyl-carrier-prot 38.3 40 0.0014 22.5 4.0 35 22-65 229-264 (265)
9 2qia_A UDP-N-acetylglucosamine 37.1 44 0.0015 22.2 4.0 19 44-65 243-261 (262)
10 4eqy_A Acyl-[acyl-carrier-prot 32.8 61 0.0021 22.0 4.2 17 46-65 266-282 (283)
11 3hsq_A Acyl-[acyl-carrier-prot 31.5 65 0.0022 21.4 4.2 20 44-66 238-257 (259)
12 3e1k_B Lactose regulatory prot 30.6 4.2 0.00015 18.6 -1.4 10 1-10 10-19 (22)
13 1mn8_A Core protein P15; helic 30.0 99 0.0034 19.0 4.9 41 17-57 52-94 (100)
14 3r0s_A Acyl-[acyl-carrier-prot 20.7 1.3E+02 0.0046 20.0 4.2 20 44-66 240-259 (266)
No 1
>3tdu_A DCN1-like protein 1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_A 4gao_A*
Probab=99.96 E-value=3.5e-30 Score=180.20 Aligned_cols=69 Identities=43% Similarity=0.768 Sum_probs=65.6
Q ss_pred CceeeeeccccccccCCCccccHHHHHHHHhhhhcccccCCchhhHHHHHHHHhhcCCcccCCChhhhhHHHHHHhcC
Q psy12033 2 PFFSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIPRDTWNMFLTFYDTI 79 (79)
Q Consensus 2 k~~Y~ftF~f~~~~~~gqK~L~~e~Ai~~W~lll~~~~~~~~~~~l~~W~~FL~~~~~~~k~IskD~W~~~l~F~~~i 79 (79)
|+||+|||+|||+ +|||+|++|+||+||+|||+++ +++|++|++||+++ ++|+||||||+|+|+|+++|
T Consensus 96 k~~Y~ftF~~~r~--~gqk~L~~e~Ai~~W~lll~~~-----~~~l~~W~~FL~~~--~~k~IskD~W~~~l~F~~~i 164 (200)
T 3tdu_A 96 KDFYQFTFNFAKN--PGQKGLDLEMAIAYWNLVLNGR-----FKFLDLWNKFLLEH--HKRSIPKDTWNLLLDFSTMI 164 (200)
T ss_dssp HHHHHHHHHHHSC--TTCSSEEHHHHHHHHHHHSTTS-----CTTHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC--cCcCcCCHHHHHHHHHHHcCCC-----chHHHHHHHHHHhc--CCcCcCHhHHHHHHHHHHHh
Confidence 5799999999999 9999999999999999999998 79999999999985 78999999999999999875
No 2
>4gba_A DCN1-like protein 3; E3 ligase, ligase-peptide complex; HET: AME; 2.40A {Homo sapiens}
Probab=99.96 E-value=4.6e-30 Score=181.97 Aligned_cols=73 Identities=52% Similarity=0.943 Sum_probs=66.5
Q ss_pred CceeeeeccccccccCCCccccHHHHHHHHhhhhcc-cccCCchhhHHHHHHHHhhcCCcccCCChhhhhHHHHHHhcC
Q psy12033 2 PFFSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSI-RVSCDESFILTAWLNFLSQHTHVVRGIPRDTWNMFLTFYDTI 79 (79)
Q Consensus 2 k~~Y~ftF~f~~~~~~gqK~L~~e~Ai~~W~lll~~-~~~~~~~~~l~~W~~FL~~~~~~~k~IskD~W~~~l~F~~~i 79 (79)
|+||+|||+|||++++|||+|++|+||+||+|||++ + +|+|++|++||+++++.+|+||||||+|+|+|+++|
T Consensus 97 k~~Y~ftF~~~~~~e~gqk~L~le~Ai~~W~Lll~~~~-----~~~l~~W~~FL~~~~~~~k~IskDtW~~~l~F~~~i 170 (221)
T 4gba_A 97 KDLYRFTFQFGLDSEEGQRSLHREIAIALWKLVFTQNN-----PPVLDQWLNFLTENPSGIKGISRDTWNMFLNFTQVI 170 (221)
T ss_dssp HHHHHHHHHHHSCTTTTCSSEEHHHHHHHHHHHTTTCC-----CTTHHHHHHHHHHCTTCCCEECHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCccccCCCHHHHHHHHHHHcCCCC-----cHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHh
Confidence 689999999999866899999999999999999998 5 799999999999852248999999999999999875
No 3
>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin, neddylation, DCN-1, center for eukaryotic structural genomics, PSI; HET: CSO MSE; 1.30A {Galdieria sulphuraria}
Probab=99.95 E-value=1.2e-29 Score=177.46 Aligned_cols=68 Identities=34% Similarity=0.719 Sum_probs=63.9
Q ss_pred CceeeeeccccccccCCCccccHHHHHHHHhhhhcccccCCchhhHHHHHHHHhhcCCcccCCChhhhhHHHHHHhcC
Q psy12033 2 PFFSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIPRDTWNMFLTFYDTI 79 (79)
Q Consensus 2 k~~Y~ftF~f~~~~~~gqK~L~~e~Ai~~W~lll~~~~~~~~~~~l~~W~~FL~~~~~~~k~IskD~W~~~l~F~~~i 79 (79)
|+||+|||+|||+ +|||+|++|+||+||+|||+++ +|+|+.|++||+++ + |+||||||+|+|+|+++|
T Consensus 98 k~~Y~ftF~~~re--~gqk~L~~e~Ai~~W~lll~~~-----~~~l~~W~~FL~~~--~-k~IskD~W~~~l~F~~~i 165 (199)
T 3kev_A 98 RAFYQFVFQYSKE--PSQRSLPAETAMALWDVLLRGR-----FSLLDSWLEFLKNN--T-HSISRDTWNLLYDFSQLS 165 (199)
T ss_dssp HHHHHHHHHHHSC--TTCSSBCHHHHHHHHHHHHTTT-----CTTHHHHHHHGGGC--C-SCBCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHcC--cCcCCCCHHHHHHHHHHHhCCc-----cHHHHHHHHHHHhc--C-CCcCHHHHHHHHHHHHHh
Confidence 5799999999999 9999999999999999999988 79999999999985 5 999999999999999875
No 4
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=99.95 E-value=7.3e-29 Score=179.74 Aligned_cols=74 Identities=30% Similarity=0.551 Sum_probs=67.6
Q ss_pred CceeeeeccccccccCCCccccHHHHHHHHhhhhccccc-CCchhhHHHHHHHHhhcCCcccCCChhhhhHHHHHHhcC
Q psy12033 2 PFFSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVS-CDESFILTAWLNFLSQHTHVVRGIPRDTWNMFLTFYDTI 79 (79)
Q Consensus 2 k~~Y~ftF~f~~~~~~gqK~L~~e~Ai~~W~lll~~~~~-~~~~~~l~~W~~FL~~~~~~~k~IskD~W~~~l~F~~~i 79 (79)
|+||+|||+|||+ +|||+|++|+||+||+|||+++|+ +.+.++|+.|++||+++ ++|+||||||+|+|+|+++|
T Consensus 165 k~~Y~f~F~~~r~--~gqk~l~~d~Ai~~W~lll~~~~p~~~~~~~l~~W~~FL~~~--~~k~IskDtW~~~l~F~~~~ 239 (270)
T 3bq3_A 165 TQIYNYAFNLILD--PNRKDIDTDEGIQYWKLFFQPEYPVRMEPDLLEAWFRFLRDE--GKTTISKDTWRMLLLFFKRY 239 (270)
T ss_dssp HHHHHHHHHHHCC--TTCSEEEHHHHHHHHHHHTSTTSSCCCCHHHHHHHHHHHHHH--TCCEEEHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC--cCcCcCcHHHHHHHHHHHcCCcccccccchHHHHHHHHHHhc--CCCCcCHHHHHHHHHHHHHh
Confidence 5799999999999 999999999999999999999852 44459999999999996 78999999999999999875
No 5
>1mhm_B Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1
Probab=54.99 E-value=6.6 Score=22.91 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=16.0
Q ss_pred CcccCCChhhhhHHHHHHh
Q psy12033 59 HVVRGIPRDTWNMFLTFYD 77 (79)
Q Consensus 59 ~~~k~IskD~W~~~l~F~~ 77 (79)
..-|+|+|++|..+|+-++
T Consensus 35 ~gLR~i~r~~w~~~L~~a~ 53 (72)
T 1mhm_B 35 KGLRSLSKAQLDEILGPAE 53 (72)
T ss_dssp CCGGGCCHHHHHHHHHHHT
T ss_pred CccccCCHHHHHHHHhhcC
Confidence 3568999999999998765
No 6
>1uhu_A Product of riken cDNA 3110009E22; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.61.1.6
Probab=45.51 E-value=53 Score=20.42 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=35.3
Q ss_pred CCCccccHHHHHHHHhhhhccc-cc-CCchhhHHHHHHHHhhcCCcccC
Q psy12033 17 CGQRILPIDMAIILWKLVFSIR-VS-CDESFILTAWLNFLSQHTHVVRG 63 (79)
Q Consensus 17 ~gqK~L~~e~Ai~~W~lll~~~-~~-~~~~~~l~~W~~FL~~~~~~~k~ 63 (79)
|...++++++-.+.++++|... .. .++.|+++.|.+-..+-+.+.|+
T Consensus 52 P~EGTfn~~iI~qV~~~VF~~gp~gHPDQvPYI~tW~~La~~pPpW~kp 100 (105)
T 1uhu_A 52 PPEGTFDLTVIFEVKAIVFQDGPGSHPDQQPYITVWQDLVQNSPPWIKS 100 (105)
T ss_dssp CSSCCCCHHHHHHHHHHHTCSSTTSCTTTHHHHHHHHHHHHTCCTTTSC
T ss_pred CCCCcccHHHHHHHHHHhccCCCCCCCcccchHHHHHHHhhCCCccccC
Confidence 4566899999999999999643 21 56689999998877765455554
No 7
>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1
Probab=39.25 E-value=45 Score=22.65 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHhhcCCcccCCCh
Q psy12033 44 SFILTAWLNFLSQHTHVVRGIPR 66 (79)
Q Consensus 44 ~~~l~~W~~FL~~~~~~~k~Isk 66 (79)
.|.++..++|+++ .+|.|.+
T Consensus 238 ~~~~~~~~~f~~~---~~r~~~~ 257 (270)
T 1j2z_A 238 NPFVKEICSFILE---SSRGVAY 257 (270)
T ss_dssp CHHHHHHHHHHHH---CSSCBCC
T ss_pred CHHHHHHHHHHHh---ccCCccC
Confidence 4789999999987 4576655
No 8
>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*
Probab=38.31 E-value=40 Score=22.53 Aligned_cols=35 Identities=26% Similarity=0.112 Sum_probs=20.9
Q ss_pred ccHHHHHHHHhh-hhcccccCCchhhHHHHHHHHhhcCCcccCCC
Q psy12033 22 LPIDMAIILWKL-VFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65 (79)
Q Consensus 22 L~~e~Ai~~W~l-ll~~~~~~~~~~~l~~W~~FL~~~~~~~k~Is 65 (79)
++++.|++--.- .++. .+.++..++|+++ .+|.|.
T Consensus 229 ~~~~~~~~~~~~~~~~~------~~~~~~~~~f~~~---~~r~~~ 264 (265)
T 4e6u_A 229 LTSVQAIDQIKSEILPS------VPEAQLLIDSLEQ---SERGIV 264 (265)
T ss_dssp CCHHHHHHHHHHHTTTT------CGGGHHHHHHHHH---CSSCBC
T ss_pred CCHHHHHHHHHhhhcCC------CHHHHHHHHHHhh---ccCCCC
Confidence 455555554433 3332 3667888999976 467664
No 9
>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A
Probab=37.11 E-value=44 Score=22.23 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHhhcCCcccCCC
Q psy12033 44 SFILTAWLNFLSQHTHVVRGIP 65 (79)
Q Consensus 44 ~~~l~~W~~FL~~~~~~~k~Is 65 (79)
.+.++..++|+++ .+|.|.
T Consensus 243 ~~~~~~~~~~~~~---~~~~~~ 261 (262)
T 2qia_A 243 YPEVKAFTDFFAR---STRGLI 261 (262)
T ss_dssp CGGGHHHHHHHHH---CCSCBC
T ss_pred CHHHHHHHHHHHh---ccCCCC
Confidence 3568889999987 456664
No 10
>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}
Probab=32.78 E-value=61 Score=22.00 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=13.2
Q ss_pred hHHHHHHHHhhcCCcccCCC
Q psy12033 46 ILTAWLNFLSQHTHVVRGIP 65 (79)
Q Consensus 46 ~l~~W~~FL~~~~~~~k~Is 65 (79)
.++..++|+++ .+|.|.
T Consensus 266 ~~~~~~~f~~~---~~r~~~ 282 (283)
T 4eqy_A 266 AVKALVDFVES---SQRGII 282 (283)
T ss_dssp HHHHHHHHHHT---CSSCBC
T ss_pred HHHHHHHHHhh---ccCCCC
Confidence 78899999975 467764
No 11
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*
Probab=31.48 E-value=65 Score=21.44 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHhhcCCcccCCCh
Q psy12033 44 SFILTAWLNFLSQHTHVVRGIPR 66 (79)
Q Consensus 44 ~~~l~~W~~FL~~~~~~~k~Isk 66 (79)
.|.++..++|+++ .+|.|.+
T Consensus 238 ~~~~~~~~~f~~~---~~r~~~~ 257 (259)
T 3hsq_A 238 IEQVKYIIKFFRD---SDRGVTN 257 (259)
T ss_dssp CHHHHHHHHHHHH---CSSCBCC
T ss_pred CHHHHHHHHHHHh---CCCCCCC
Confidence 4778899999976 4676643
No 12
>3e1k_B Lactose regulatory protein LAC9; transctiption, repressor, trans-activation, carbohydrate metabolism, DNA-binding, galactose metabolism; 3.00A {Kluyveromyces lactis}
Probab=30.59 E-value=4.2 Score=18.58 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=6.7
Q ss_pred CCceeeeecc
Q psy12033 1 MPFFSKFTFR 10 (79)
Q Consensus 1 ~k~~Y~ftF~ 10 (79)
|-+||+|.|+
T Consensus 10 mddvynylfd 19 (22)
T 3e1k_B 10 MDDVYNYIFD 19 (26)
T ss_pred HHHHHHHhcc
Confidence 3467888774
No 13
>1mn8_A Core protein P15; helical bundle, viral protein; 1.00A {Moloney murine leukemia virus} SCOP: a.61.1.6
Probab=29.96 E-value=99 Score=18.99 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=31.0
Q ss_pred CCCccccHHHHHHHHhhhhccc-cc-CCchhhHHHHHHHHhhc
Q psy12033 17 CGQRILPIDMAIILWKLVFSIR-VS-CDESFILTAWLNFLSQH 57 (79)
Q Consensus 17 ~gqK~L~~e~Ai~~W~lll~~~-~~-~~~~~~l~~W~~FL~~~ 57 (79)
|...++++++-.+.+.++|... .. .++.|++..|.+-..+-
T Consensus 52 P~eGTfn~~~I~~v~~~Vf~~g~~ghPDQvPYI~tW~~La~~P 94 (100)
T 1mn8_A 52 PRDGTFNRDLITQVKIKVFSPGPHGHPDQVPYIVTWEALAFDP 94 (100)
T ss_dssp CTTCCCCHHHHHHHHHHHTSCTTSSCGGGHHHHHHHHHHHHSC
T ss_pred CCCCcccHHHHHHHHHhhcccCCCCCCccchhHHHHHHHhhCC
Confidence 4566899999999999999532 21 45689999998766553
No 14
>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0
Probab=20.71 E-value=1.3e+02 Score=20.01 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHhhcCCcccCCCh
Q psy12033 44 SFILTAWLNFLSQHTHVVRGIPR 66 (79)
Q Consensus 44 ~~~l~~W~~FL~~~~~~~k~Isk 66 (79)
.|.++..++|+++ .+|.|.+
T Consensus 240 ~~~~~~~~~f~~~---~~r~~~~ 259 (266)
T 3r0s_A 240 SENVKKMCHFILE---TKRGIPV 259 (266)
T ss_dssp CHHHHHHHHHHHH---CSSCCCB
T ss_pred CHHHHHHHHHHHh---ccCCcCC
Confidence 4778999999976 4566644
Done!