RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12033
         (79 letters)



>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin,
           neddylation, DCN-1, center for eukaryotic structural
           genomics, PSI; HET: CSO MSE; 1.30A {Galdieria
           sulphuraria}
          Length = 199

 Score = 65.0 bits (158), Expect = 6e-15
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 4   FSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRG 63
           F +F F++  +    QR LP + A+ LW ++   R S     +L +WL FL  +T     
Sbjct: 100 FYQFVFQYSKEP--SQRSLPAETAMALWDVLLRGRFS-----LLDSWLEFLKNNT---HS 149

Query: 64  IPRDTWNMFLTFYDTI 79
           I RDTWN+   F    
Sbjct: 150 ISRDTWNLLYDFSQLS 165


>3tdu_A DCN1-like protein 1; E2:E3, ligase-protein binding complex; 1.50A
           {Homo sapiens} PDB: 3tdz_A
          Length = 200

 Score = 62.7 bits (152), Expect = 4e-14
 Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 9/76 (11%)

Query: 4   FSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRG 63
           F +FTF F  +   GQ+ L ++MAI  W LV + R        L  W  FL +H    R 
Sbjct: 98  FYQFTFNFAKNP--GQKGLDLEMAIAYWNLVLNGRFK-----FLDLWNKFLLEHHK--RS 148

Query: 64  IPRDTWNMFLTFYDTI 79
           IP+DTWN+ L F   I
Sbjct: 149 IPKDTWNLLLDFSTMI 164


>3bq3_A Defective in cullin neddylation protein 1; ubiquitin,
           ubiquitination,SCF,cullin, E3 E2, cell cycle, protein
           degradation, ligase; 1.90A {Saccharomyces cerevisiae}
           PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
          Length = 270

 Score = 59.5 bits (143), Expect = 1e-12
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 4   FSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESF-ILTAWLNFLSQHTHVVR 62
              + F   LD    ++ +  D  I  WKL F           +L AW  FL        
Sbjct: 167 IYNYAFNLILDP--NRKDIDTDEGIQYWKLFFQPEYPVRMEPDLLEAWFRFLRDEGK--T 222

Query: 63  GIPRDTWNMFLTFYDTI 79
            I +DTW M L F+   
Sbjct: 223 TISKDTWRMLLLFFKRY 239


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.6 bits (53), Expect = 3.8
 Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 30/81 (37%)

Query: 15  SSCGQRILPIDMAIIL-----W-----------KLVFSIRVSCDESF-ILTAWLNFLSQ- 56
           +   Q ++    A+ +     W            ++F I V C E++   +   + L   
Sbjct: 271 TGHSQGLV---TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327

Query: 57  --HTH-------VVRGIPRDT 68
             +          +  + ++ 
Sbjct: 328 LENNEGVPSPMLSISNLTQEQ 348


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.335    0.145    0.493 

Gapped
Lambda     K      H
   0.267   0.0550    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,267,536
Number of extensions: 57720
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 5
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (23.8 bits)