BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12035
(251 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A2BTZ9|SYA_PROM5 Alanine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9515)
GN=alaS PE=3 SV=1
Length = 886
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 27/192 (14%)
Query: 32 MGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAKQEYYFASTNGSQISFMWIP 91
MG+ +++ L+ N Y ILP+ V+ L +NI YF+S + ++IS +
Sbjct: 230 MGLERMAQILQKKTNN--YETDLILPI-VKEAALIANI-----DYFSSDDRTKISLKILG 281
Query: 92 SHSNIALNDKADQLAKNSINSKLLD-------------FYIQDDLKNHLRKNIVKLYNDQ 138
H+ ++ +D + +++ + I+DD + L + L +
Sbjct: 282 DHTRAIIHLISDGVVASNLGRGYILRRLLRRMIRHGRLLAIKDDFLSRLASIGISLMQNT 341
Query: 139 WTNIQNNKLRTIKDNTTLWKTSLRKI-RNEEILLTRLRIGHTRITHSYLFTKTPHPICTC 197
+ +++NNK R +++ K L + R E++L +R G I+ TK T
Sbjct: 342 YPDLKNNKERILREINIEEKRFLETLDRGEKLLNDLIRSGEKLISG----TKAFELYDTY 397
Query: 198 GFPLTV-KHIFE 208
GFPL + K I E
Sbjct: 398 GFPLELTKEILE 409
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 35.8 bits (81), Expect = 0.33, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 84 QISFMWIPSHSNIALNDKADQLAKNSINSKLLDFYIQDDLKNHLRKNIVKLYNDQWTNIQ 143
QI W+P+H I N++ D+L I L I++ + H R Y++ W N+
Sbjct: 1146 QIYLQWVPAHKGIGGNEEIDKLVSKGIRRVLFLEKIEEAQEKHER------YHNNWKNLA 1199
Query: 144 N 144
+
Sbjct: 1200 D 1200
>sp|A1WFG9|RNH_VEREI Ribonuclease H OS=Verminephrobacter eiseniae (strain EF01-2)
GN=rnhA PE=3 SV=1
Length = 155
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 77 FASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 114
ST G +I + W+ HS N++AD LA ++ L
Sbjct: 109 LVSTGGHRIEWRWVKGHSGDPGNERADALANRGVDQAL 146
>sp|Q00598|FENR_CYAPA Ferredoxin--NADP reductase, cyanelle OS=Cyanophora paradoxa GN=PETH
PE=1 SV=1
Length = 363
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 32 MGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAKQEYYFASTNGSQISFMWIP 91
+G ++ +S+ + L + I P R +F A +Y F NG F+ +P
Sbjct: 200 VGTTMLMPEDQSATIIMLATGTGIAPFRSFLRRMFEETHA--DYKF---NGLAWLFLGVP 254
Query: 92 SHSNIALNDKADQLAKNSINSKLLDFYI---QDDLKN---HLRKNIVKLYNDQWTNIQNN 145
+ S + ++ +++ K + N+ LD+ I Q D K +++ I + N+ W IQ
Sbjct: 255 TSSTLLYREELEKMQKANPNNFRLDYAISREQTDSKGEKMYIQNRIAEYANEFWNMIQ-- 312
Query: 146 KLRTIKDNTTLWKTSLRKIRN 166
K NT ++ LR + +
Sbjct: 313 -----KPNTFVYMCGLRGMED 328
>sp|Q4J6D9|GLMS_SULAC Glutamine--fructose-6-phosphate aminotransferase [isomerizing]
OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=glmS PE=3
SV=3
Length = 590
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 140 TNIQNNKLRTIKDNTTLWKTSLRKIRNEEILLTRLRIGHTR-ITHSYLFTKTPHPICTCG 198
++ NNKL K T+ + +K +E + + +GHTR TH HP C
Sbjct: 38 ASLDNNKLEVRKAKGTVEEVISKKKVSE--MSGYIFLGHTRWATHGPPTDYNAHPHVDCS 95
Query: 199 FPLTVKHIFECNKYKKFREKL 219
+ V H YK+ RE+L
Sbjct: 96 GKIAVIHNGTIKNYKELREEL 116
>sp|A4IYE6|RNH_FRATW Ribonuclease H OS=Francisella tularensis subsp. tularensis (strain
WY96-3418) GN=rnhA PE=3 SV=1
Length = 152
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 80 TNGSQISFMWIPSHSNIALNDKADQLAKNSI 110
TN +++ W+ HS A N+KAD+LA +I
Sbjct: 116 TNKHNVTWGWVKGHSGNAGNEKADELANKAI 146
>sp|Q0BMB7|RNH_FRATO Ribonuclease H OS=Francisella tularensis subsp. holarctica (strain
OSU18) GN=rnhA PE=3 SV=1
Length = 152
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 80 TNGSQISFMWIPSHSNIALNDKADQLAKNSI 110
TN +++ W+ HS A N+KAD+LA +I
Sbjct: 116 TNKHNVTWGWVKGHSGNAGNEKADELANKAI 146
>sp|A0Q6W0|RNH_FRATN Ribonuclease H OS=Francisella tularensis subsp. novicida (strain
U112) GN=rnhA PE=3 SV=1
Length = 152
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 80 TNGSQISFMWIPSHSNIALNDKADQLAKNSI 110
TN +++ W+ HS A N+KAD+LA +I
Sbjct: 116 TNKHNVTWGWVKGHSGNAGNEKADELANKAI 146
>sp|B2SFV9|RNH_FRATM Ribonuclease H OS=Francisella tularensis subsp. mediasiatica
(strain FSC147) GN=rnhA PE=3 SV=1
Length = 152
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 80 TNGSQISFMWIPSHSNIALNDKADQLAKNSI 110
TN +++ W+ HS A N+KAD+LA +I
Sbjct: 116 TNKHNVTWGWVKGHSGNAGNEKADELANKAI 146
>sp|Q2A3X6|RNH_FRATH Ribonuclease H OS=Francisella tularensis subsp. holarctica (strain
LVS) GN=rnhA PE=3 SV=1
Length = 152
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 80 TNGSQISFMWIPSHSNIALNDKADQLAKNSI 110
TN +++ W+ HS A N+KAD+LA +I
Sbjct: 116 TNKHNVTWGWVKGHSGNAGNEKADELANKAI 146
>sp|A7NBM9|RNH_FRATF Ribonuclease H OS=Francisella tularensis subsp. holarctica (strain
FTNF002-00 / FTA) GN=rnhA PE=3 SV=1
Length = 152
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 80 TNGSQISFMWIPSHSNIALNDKADQLAKNSI 110
TN +++ W+ HS A N+KAD+LA +I
Sbjct: 116 TNKHNVTWGWVKGHSGNAGNEKADELANKAI 146
>sp|Q14IN1|RNH_FRAT1 Ribonuclease H OS=Francisella tularensis subsp. tularensis (strain
FSC 198) GN=rnhA PE=3 SV=2
Length = 152
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 80 TNGSQISFMWIPSHSNIALNDKADQLAKNSI 110
TN +++ W+ HS A N+KAD+LA +I
Sbjct: 116 TNKHNVTWGWVKGHSGNAGNEKADELANKAI 146
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 31.6 bits (70), Expect = 4.9, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 85 ISFMWIPSHSNIALNDKADQLAKNSINSKLLDFYIQDDLKNHLRKNIVKLYNDQWTNIQN 144
I W+P+H I N++ D+L + L I++ + H R Y+ W N+ +
Sbjct: 1144 IYLQWVPAHKGIGGNEEIDKLVSKGVRRILFIGRIEEAQEEHDR------YHSNWRNLAD 1197
>sp|P57371|TOP1_BUCAI DNA topoisomerase 1 OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=topA PE=3 SV=1
Length = 861
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 49 LYAESAILPLSVRRRLLFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKN 108
LY E I + L I K Y S GS ++P NI N+K Q A
Sbjct: 310 LYEEGYITYMRTDSNYLSEYAIKKVRKYIKSNYGSN----YLPKEPNIYSNEKHSQEAHE 365
Query: 109 SINSKLLDFYIQDDLKNHLRKNIVKLYNDQWTNIQNNKLRTIK 151
+I D I++ +HL + KLY W ++++++K
Sbjct: 366 AIRPS--DIKIKNIDSDHLNSSAKKLYELIWNQFLASQMKSVK 406
>sp|Q49W60|2NPD_STAS1 Probable nitronate monooxygenase OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=SSP1854 PE=3 SV=1
Length = 355
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 108 NSINSKLLDFYIQDDLKNHLRKNIVKLYNDQWTNIQNNKLRTIKDNTTLW 157
N + ++ D+ IQ+ L N LRK N QWT++ + + + + + W
Sbjct: 290 NEYDDEIPDYPIQNQLTNALRKEAANKGNAQWTHLWSGQSPRLVQHMSAW 339
>sp|Q2SJ45|RNH_HAHCH Ribonuclease H OS=Hahella chejuensis (strain KCTC 2396) GN=rnhA
PE=3 SV=1
Length = 148
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 21/125 (16%)
Query: 10 YGCSIFMNANKK--YLSHLDTIHHMGIRLIS-----RALKSSPVNSLYAESAILPLSVRR 62
+G + N+K Y LDT ++ + L++ RALK LY +S + +
Sbjct: 21 WGAILIYGKNEKEIYGGELDTTNNR-MELMAAIEALRALKQGCKVELYTDSQYVRKGITE 79
Query: 63 ----------RLLFSNIIAKQEYYFA---STNGSQISFMWIPSHSNIALNDKADQLAKNS 109
R + + + + A N IS+ W+ HS LN++AD+LA
Sbjct: 80 WMQNWIKKGWRTSGGDPVKNVDLWQALDKERNKHDISWRWVKGHSGHPLNERADELANLG 139
Query: 110 INSKL 114
+ L
Sbjct: 140 VKEAL 144
>sp|P44861|ANMK_HAEIN Anhydro-N-acetylmuramic acid kinase OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=anmK PE=3
SV=1
Length = 382
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 16/130 (12%)
Query: 77 FASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKLLD------FYIQDDLKNHLRKN 130
F + G+ + WI H + ++ + AK ++N LLD F+ K+ R
Sbjct: 188 FDTGPGNTLLDQWIEKHQGLRYDENGEWAAKGNVNKVLLDELLNEPFFSLPAPKSTGR-- 245
Query: 131 IVKLYNDQWTNIQNNKLRTIKDNTTLWKTSLRKIRNEEILLTRLRIGHTRITHSY--LFT 188
+L+N W N+K+ I++ T + R E++ T + + T I ++ L T
Sbjct: 246 --ELFNLVWL---NHKIAKIREKLTALSVEM-SFRPEDVQATLVELTVTSIVNALNQLQT 299
Query: 189 KTPHPICTCG 198
P + CG
Sbjct: 300 DLPKRLLVCG 309
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,910,335
Number of Sequences: 539616
Number of extensions: 3449128
Number of successful extensions: 9410
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 9384
Number of HSP's gapped (non-prelim): 63
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)