Query psy12035
Match_columns 251
No_of_seqs 193 out of 746
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 16:58:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qio_A GAG-POL polyprotein; RN 99.2 4.9E-11 1.7E-15 94.3 6.9 81 27-112 47-147 (150)
2 3h08_A RNH (ribonuclease H); R 99.1 4.8E-11 1.6E-15 93.6 4.8 83 27-113 42-145 (146)
3 1jl1_A Ribonuclease HI; RNAse 99.1 2.1E-10 7.2E-15 91.0 6.8 85 27-114 42-145 (155)
4 2e4l_A Ribonuclease HI, RNAse 99.0 2.8E-10 9.7E-15 90.5 6.9 83 27-112 44-145 (158)
5 2qkb_A Ribonuclease H1, HS-RNA 99.0 2E-10 6.9E-15 90.9 5.4 86 27-113 48-152 (154)
6 3p1g_A Xenotropic murine leuke 99.0 1.5E-10 5E-15 92.9 3.0 102 9-114 40-158 (165)
7 1ril_A Ribonuclease H; hydrola 99.0 5.5E-10 1.9E-14 89.6 5.9 85 27-114 46-150 (166)
8 2kq2_A Ribonuclease H-related 98.9 3.1E-10 1.1E-14 89.2 0.3 85 28-114 49-139 (147)
9 2lsn_A Reverse transcriptase; 98.8 3.8E-09 1.3E-13 84.6 3.9 81 30-112 57-163 (165)
10 1mu2_A HIV-2 RT; HIV-2 reverse 98.7 5E-09 1.7E-13 99.1 4.4 79 27-110 471-555 (555)
11 2zd1_A Reverse transcriptase/r 98.6 6.4E-09 2.2E-13 98.4 1.2 78 27-109 474-557 (557)
12 3u3g_D Ribonuclease H, RNAse H 97.9 7.8E-06 2.7E-10 62.5 4.2 82 27-112 43-137 (140)
13 3hst_B Protein RV2228C/MT2287; 97.8 1.3E-05 4.5E-10 61.5 3.9 81 27-112 44-133 (141)
14 2ehg_A Ribonuclease HI; RNAse 97.6 2.3E-05 8E-10 60.9 2.4 80 26-112 45-134 (149)
15 3alr_A Nanos protein; zinc-fin 57.0 5.2 0.00018 28.6 1.9 24 193-216 72-97 (106)
16 4htu_A Ribonuclease H, RNAse H 33.9 13 0.00046 27.8 1.1 37 27-65 43-79 (134)
17 1a6b_B Momulv, zinc finger pro 26.1 40 0.0014 19.6 2.0 22 189-213 7-30 (40)
18 2fqc_A Conotoxin PL14A; alpha- 24.8 21 0.00071 18.5 0.5 7 175-181 12-18 (26)
19 2ysa_A Retinoblastoma-binding 23.8 36 0.0012 21.3 1.6 18 192-212 7-26 (55)
No 1
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.16 E-value=4.9e-11 Score=94.26 Aligned_cols=81 Identities=21% Similarity=0.282 Sum_probs=60.8
Q ss_pred hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhh----------------hHHH----HHHhhCCCceE
Q psy12035 27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIA----------------KQEY----YFASTNGSQIS 86 (251)
Q Consensus 27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~----------------k~~~----~~~~~~~~~i~ 86 (251)
.+-+++|+.|++.|++..+ ....|.+||.++...+.+++. .+++ ...-.+...|.
T Consensus 47 ~Tnn~aEl~A~i~AL~~~~-----~~v~i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~ 121 (150)
T 3qio_A 47 TTNQKTELQAIYLALQDSG-----LEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVY 121 (150)
T ss_dssp CCHHHHHHHHHHHHHHHSC-----SEEEEEESCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEE
T ss_pred CCHHHHHHHHHHHHHHhCC-----CcEEEEeCcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceE
Confidence 4559999999999998754 223588999888776665431 1111 11124677899
Q ss_pred EEeeccCCCCccchHHhHHHhhhhcC
Q psy12035 87 FMWIPSHSNIALNDKADQLAKNSINS 112 (251)
Q Consensus 87 ~~WvPgH~gI~GNE~AD~lAk~a~~~ 112 (251)
|.|||||+|++|||.||+||++|+..
T Consensus 122 ~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 122 LAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp EEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred EEEccCcCCChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999865
No 2
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.11 E-value=4.8e-11 Score=93.61 Aligned_cols=83 Identities=18% Similarity=0.197 Sum_probs=59.6
Q ss_pred hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhh-hhhh----------------HHH----HHHhhCCCce
Q psy12035 27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSN-IIAK----------------QEY----YFASTNGSQI 85 (251)
Q Consensus 27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~-~~~k----------------~~~----~~~~~~~~~i 85 (251)
.+-+++|+.+++.|++..... ...-|.+|+..+...+.+ ++.+ +++ ..+ .....|
T Consensus 42 ~Tnn~aEl~A~~~AL~~~~~~---~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~-~~~~~v 117 (146)
T 3h08_A 42 TTNNRMELMAAIKGLEALKEP---ARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKL-TTLHRV 117 (146)
T ss_dssp ECHHHHHHHHHHHHHHTCSSC---CEEEEEESCHHHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHH-HHHSEE
T ss_pred CcHHHHHHHHHHHHHHhcCcc---CcEEEEeChHHHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHH-HhhCce
Confidence 455899999999999987652 223588999888776655 4321 111 111 123569
Q ss_pred EEEeeccCCCCccchHHhHHHhhhhcCC
Q psy12035 86 SFMWIPSHSNIALNDKADQLAKNSINSK 113 (251)
Q Consensus 86 ~~~WvPgH~gI~GNE~AD~lAk~a~~~~ 113 (251)
.|.|||||+|++|||.||+|||+|+...
T Consensus 118 ~~~~V~gH~g~~~N~~AD~LA~~a~~~~ 145 (146)
T 3h08_A 118 TFHKVKGHSDNPYNSRADELARLAIKEN 145 (146)
T ss_dssp EEEECCC-CCSHHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCcCCcHhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999997643
No 3
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.07 E-value=2.1e-10 Score=91.00 Aligned_cols=85 Identities=22% Similarity=0.245 Sum_probs=62.8
Q ss_pred hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhhh----------------HHHH---HHhhCCCceEE
Q psy12035 27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAK----------------QEYY---FASTNGSQISF 87 (251)
Q Consensus 27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~k----------------~~~~---~~~~~~~~i~~ 87 (251)
.+.+++|+.|++.|++..... ....|.+|+..+...+..++.+ +++. ........|.|
T Consensus 42 ~tn~~aEl~A~~~aL~~~~~~---~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~ 118 (155)
T 1jl1_A 42 TTNNRMELMAAIVALEALKEH---AEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 (155)
T ss_dssp ECHHHHHHHHHHHHHHTCCSC---CEEEEEECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhCcC---CcEEEEeCHHHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHccCceEE
Confidence 356999999999999987653 2235889998887666543210 1111 11123468999
Q ss_pred EeeccCCCCccchHHhHHHhhhhcCCC
Q psy12035 88 MWIPSHSNIALNDKADQLAKNSINSKL 114 (251)
Q Consensus 88 ~WvPgH~gI~GNE~AD~lAk~a~~~~~ 114 (251)
.|||||+|++|||.||+|||+|+..+.
T Consensus 119 ~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 145 (155)
T 1jl1_A 119 EWVKGHAGHPENERADELARAAAMNPT 145 (155)
T ss_dssp EECCSSTTCHHHHHHHHHHHHHHHSCC
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999998765
No 4
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.05 E-value=2.8e-10 Score=90.53 Aligned_cols=83 Identities=20% Similarity=0.211 Sum_probs=61.4
Q ss_pred hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhhh----------------HHHH---HHhhCCCceEE
Q psy12035 27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAK----------------QEYY---FASTNGSQISF 87 (251)
Q Consensus 27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~k----------------~~~~---~~~~~~~~i~~ 87 (251)
.+.+++|+.|++.||+..+.. ....|.+|+..+...+..++.+ .++. .....+..|.|
T Consensus 44 ~tn~~aEl~A~~~AL~~~~~~---~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~ 120 (158)
T 2e4l_A 44 TTNNRMELLAPIVALEALKEP---CKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQIDW 120 (158)
T ss_dssp ECHHHHHHHHHHHHHHTCSSC---CEEEEEECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTSEEEE
T ss_pred CccHHHHHHHHHHHHHHhccC---CeEEEEeCHHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHccCcEEE
Confidence 456999999999999987654 2335889998877666543221 1110 01123468999
Q ss_pred EeeccCCCCccchHHhHHHhhhhcC
Q psy12035 88 MWIPSHSNIALNDKADQLAKNSINS 112 (251)
Q Consensus 88 ~WvPgH~gI~GNE~AD~lAk~a~~~ 112 (251)
.|||||+|++|||.||+|||+|+..
T Consensus 121 ~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 121 RWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp EECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred EEccCCCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999876
No 5
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.03 E-value=2e-10 Score=90.90 Aligned_cols=86 Identities=21% Similarity=0.305 Sum_probs=61.1
Q ss_pred hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhhh----------------HHHH-HH--hhCCCceEE
Q psy12035 27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAK----------------QEYY-FA--STNGSQISF 87 (251)
Q Consensus 27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~k----------------~~~~-~~--~~~~~~i~~ 87 (251)
.+.+++|+.|++.||+....... ....|.+|+..+...+.+++.+ +++. .+ ...+..|.|
T Consensus 48 ~tn~~aEl~A~~~aL~~~~~~~~-~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~~v~~ 126 (154)
T 2qkb_A 48 QTNQRAEIHAACKAIEQAKTQNI-NKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQW 126 (154)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTC-CEEEEEESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCEEEE
T ss_pred CchHHHHHHHHHHHHHHHHhCCC-ceEEEEECcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCCceEE
Confidence 46699999999999987643211 1235889998877666553321 1111 11 123567999
Q ss_pred EeeccCCCCccchHHhHHHhhhhcCC
Q psy12035 88 MWIPSHSNIALNDKADQLAKNSINSK 113 (251)
Q Consensus 88 ~WvPgH~gI~GNE~AD~lAk~a~~~~ 113 (251)
.|||||+|++|||.||+|||+|+..+
T Consensus 127 ~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 127 MHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp EECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred EEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 99999999999999999999998754
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=98.99 E-value=1.5e-10 Score=92.93 Aligned_cols=102 Identities=15% Similarity=0.095 Sum_probs=67.1
Q ss_pred chhchhccccchhhhh---hhhhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHh-----hhhhhHH----HH
Q psy12035 9 DYGCSIFMNANKKYLS---HLDTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFS-----NIIAKQE----YY 76 (251)
Q Consensus 9 ~Yga~iw~~~~~~~~~---~l~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~-----~~~~k~~----~~ 76 (251)
.||+.|.......... .-.+.+++|+.+++.|++... .....|.+|+.++...+- +.+..++ +.
T Consensus 40 g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~----~~~v~I~tDS~~vi~~iw~~~~g~~v~n~dl~~~l~ 115 (165)
T 3p1g_A 40 RAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAE----GKKLNVYTDSRYAFATAHVHSEGREIKNKNEILALL 115 (165)
T ss_dssp EEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHTB----TSEEEEEECCHHHHHHHHSCCCSCCCSSHHHHHHHH
T ss_pred EEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHcc----CceEEEEEchHHHHhhhhcccCCCcccCHHHHHHHH
Confidence 4666665543211111 223559999999999999873 123358899987776541 0011111 11
Q ss_pred HHhhCCCceEEEeeccCCC-----CccchHHhHHHhhhhcCCC
Q psy12035 77 FASTNGSQISFMWIPSHSN-----IALNDKADQLAKNSINSKL 114 (251)
Q Consensus 77 ~~~~~~~~i~~~WvPgH~g-----I~GNE~AD~lAk~a~~~~~ 114 (251)
..-..+..|.|.|||||+| ++|||.||++||+|+..+.
T Consensus 116 ~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~ 158 (165)
T 3p1g_A 116 KALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAV 158 (165)
T ss_dssp HHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCC
Confidence 1123578899999999999 9999999999999987654
No 7
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=98.97 E-value=5.5e-10 Score=89.62 Aligned_cols=85 Identities=15% Similarity=0.238 Sum_probs=62.9
Q ss_pred hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhh-hhhh----------------HHHH-H--HhhCCCceE
Q psy12035 27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSN-IIAK----------------QEYY-F--ASTNGSQIS 86 (251)
Q Consensus 27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~-~~~k----------------~~~~-~--~~~~~~~i~ 86 (251)
.+.+++|+.+++.||+...... ...|.+|+..+...+.+ ++.+ +++. . .......|.
T Consensus 46 ~Tnn~aEl~Ai~~AL~~~~~~~---~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~~v~ 122 (166)
T 1ril_A 46 TTNNRMELKAAIEGLKALKEPC---EVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVR 122 (166)
T ss_dssp ECHHHHHHHHHHHHHHSCCSCC---EEEEECCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSEEE
T ss_pred CcHHHHHHHHHHHHHHHhccCC---eEEEEeChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcCeEE
Confidence 4569999999999999876542 33588999888766655 3321 1111 0 112346899
Q ss_pred EEeeccCCCCccchHHhHHHhhhhcCCC
Q psy12035 87 FMWIPSHSNIALNDKADQLAKNSINSKL 114 (251)
Q Consensus 87 ~~WvPgH~gI~GNE~AD~lAk~a~~~~~ 114 (251)
|.|||||+|++|||.||+|||+|+....
T Consensus 123 ~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 123 FHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp CCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred EEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999987764
No 8
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=98.85 E-value=3.1e-10 Score=89.24 Aligned_cols=85 Identities=20% Similarity=0.110 Sum_probs=54.9
Q ss_pred hhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhh-hhhhH----HHH-HHhhCCCceEEEeeccCCCCccchH
Q psy12035 28 TIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSN-IIAKQ----EYY-FASTNGSQISFMWIPSHSNIALNDK 101 (251)
Q Consensus 28 ~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~-~~~k~----~~~-~~~~~~~~i~~~WvPgH~gI~GNE~ 101 (251)
+.+++|+.|++.||+....... ...|.+|+.-+.+...+ +..+. .+. ..+.-...|.|.|||||+|++|||.
T Consensus 49 tNn~aEl~A~~~AL~~a~~~~~--~v~I~tDS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~~v~~~wV~gH~g~~~Ne~ 126 (147)
T 2kq2_A 49 RNVAGEIAAALYAVKKASQLGV--KIRILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRGIYSFEKVKAHSGNEFNDY 126 (147)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTC--CCCBSSCCSTHHHHTTSSSSCCHHHHHHHHCGGGGGSTTCCBCCCCCCCCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHhCCCccCCcchHHHHHHHHHhcCCeeEEEecCcCCCcchHH
Confidence 5699999999999985322222 23577888533322211 10001 011 1111122899999999999999999
Q ss_pred HhHHHhhhhcCCC
Q psy12035 102 ADQLAKNSINSKL 114 (251)
Q Consensus 102 AD~lAk~a~~~~~ 114 (251)
||+|||+|+....
T Consensus 127 AD~LA~~a~~~~~ 139 (147)
T 2kq2_A 127 VDMKAKSALGIRD 139 (147)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHHhccc
Confidence 9999999998765
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=98.76 E-value=3.8e-09 Score=84.61 Aligned_cols=81 Identities=14% Similarity=-0.049 Sum_probs=51.0
Q ss_pred hHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhhh----------------HH----HHHHhhCCCceEEEe
Q psy12035 30 HHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAK----------------QE----YYFASTNGSQISFMW 89 (251)
Q Consensus 30 ~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~k----------------~~----~~~~~~~~~~i~~~W 89 (251)
+++++.|+..|++........ ..|.+||.++.+.+.+++.+ ++ +..+-.....|+|.|
T Consensus 57 ~~Aei~Al~~al~~al~~~~~--v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~ 134 (165)
T 2lsn_A 57 QMAEIAAVEFACKKALKIPGP--VLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQH 134 (165)
T ss_dssp HHHHHHHHHHHHHHHHHSSSC--EEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCe--EEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEE
Confidence 455555555544322111112 24889999988777654431 11 122223345899999
Q ss_pred eccCCCC------ccchHHhHHHhhhhcC
Q psy12035 90 IPSHSNI------ALNDKADQLAKNSINS 112 (251)
Q Consensus 90 vPgH~gI------~GNE~AD~lAk~a~~~ 112 (251)
||||+|+ +|||.||+||++|+..
T Consensus 135 VkgH~g~~~~~~~~gNe~AD~LA~~gA~~ 163 (165)
T 2lsn_A 135 EKGHQPTNTSIHTEGNALADKLATQGSYV 163 (165)
T ss_dssp CCSSSCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCccCCCCChHHHHHHHHHHHhhhh
Confidence 9999995 5899999999998753
No 10
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=98.73 E-value=5e-09 Score=99.09 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=57.7
Q ss_pred hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhh--h----HHHHHHhhCCCceEEEeeccCCCCccch
Q psy12035 27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIA--K----QEYYFASTNGSQISFMWIPSHSNIALND 100 (251)
Q Consensus 27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~--k----~~~~~~~~~~~~i~~~WvPgH~gI~GNE 100 (251)
.+-+++|+.|++.|++..+ ....|.+|+..+.+.+.++.. + +++...-.....|.+.|||||+|++|||
T Consensus 471 ~TNn~aEl~A~i~aL~~~~-----~~v~I~tDS~~v~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne 545 (555)
T 1mu2_A 471 TTNQQAELEAFAMALTDSG-----PKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQ 545 (555)
T ss_dssp CCHHHHHHHHHHHHHHTSC-----SEEEEEESCHHHHHHHHTCCSEESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTHH
T ss_pred CCHHHHHHHHHHHHHHcCC-----CeEEEEEehHHHHHHHhcccccccHHHHHHHHHHhccCCcEEEEEEECCCCChhHH
Confidence 4559999999999998722 123588999888776654221 1 1122222346789999999999999999
Q ss_pred HHhHHHhhhh
Q psy12035 101 KADQLAKNSI 110 (251)
Q Consensus 101 ~AD~lAk~a~ 110 (251)
.||+|||+|+
T Consensus 546 ~AD~LA~~a~ 555 (555)
T 1mu2_A 546 EVDHLVSQGI 555 (555)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhhC
Confidence 9999999874
No 11
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=98.61 E-value=6.4e-09 Score=98.39 Aligned_cols=78 Identities=22% Similarity=0.256 Sum_probs=54.6
Q ss_pred hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhhh--HH----HHHHhhCCCceEEEeeccCCCCccch
Q psy12035 27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIAK--QE----YYFASTNGSQISFMWIPSHSNIALND 100 (251)
Q Consensus 27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~k--~~----~~~~~~~~~~i~~~WvPgH~gI~GNE 100 (251)
.+-+++|+.|++.|++..+ ....|.+||..+...+.++..+ ++ +...-.....|.+.|||||+|++|||
T Consensus 474 ~TNn~aEl~Ai~~aL~~~~-----~~v~I~tDS~~vi~~i~~~~~~~~~~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne 548 (557)
T 2zd1_A 474 TTNQKTELQAIYLALQDSG-----LEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNE 548 (557)
T ss_dssp CCHHHHHHHHHHHHHHHSC-----SEEEEEECCHHHHHHHTTCCSEESSHHHHHHHHHHHHCSEEEEEECCSSSCCTTCC
T ss_pred CCHHHHHHHHHHHHHHhCC-----CcEEEEeChHHHHHHHhcCCccCCHHHHHHHHHHHhcCCCEEEEEcCCCCCChhHH
Confidence 4559999999999998873 2235889998887766543221 11 11111234589999999999999999
Q ss_pred HHhHHHhhh
Q psy12035 101 KADQLAKNS 109 (251)
Q Consensus 101 ~AD~lAk~a 109 (251)
.||+|||+|
T Consensus 549 ~AD~LA~~a 557 (557)
T 2zd1_A 549 QVDKLVSAG 557 (557)
T ss_dssp GGGGCC---
T ss_pred HHHHHHhcC
Confidence 999999976
No 12
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=97.91 E-value=7.8e-06 Score=62.47 Aligned_cols=82 Identities=18% Similarity=0.144 Sum_probs=54.1
Q ss_pred hhhhHHHHHHHHhhhccCCccchh---hhccccchHHHHHHHHhhhhh-h--------HHHHHH-hhCCCceEEEeeccC
Q psy12035 27 DTIHHMGIRLISRALKSSPVNSLY---AESAILPLSVRRRLLFSNIIA-K--------QEYYFA-STNGSQISFMWIPSH 93 (251)
Q Consensus 27 ~~~~r~~l~~i~~a~rt~~~~~~~---~~~~i~p~~l~~~~~~~~~~~-k--------~~~~~~-~~~~~~i~~~WvPgH 93 (251)
.+.+++|+.+++.|++........ ...-|.+|+..+...+.+... + +.+..+ ..+-..|+|.|||+
T Consensus 43 ~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~- 121 (140)
T 3u3g_D 43 TTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPR- 121 (140)
T ss_dssp ECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCG-
T ss_pred CchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCc-
Confidence 456999999999999876543221 022477888887765543111 1 111122 23335899999995
Q ss_pred CCCccchHHhHHHhhhhcC
Q psy12035 94 SNIALNDKADQLAKNSINS 112 (251)
Q Consensus 94 ~gI~GNE~AD~lAk~a~~~ 112 (251)
+|||.||+|||+|+..
T Consensus 122 ---~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 122 ---EKNARADELVNEAIDK 137 (140)
T ss_dssp ---GGGHHHHHHHHHHHHH
T ss_pred ---hhhHHHHHHHHHHHHh
Confidence 8999999999998653
No 13
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=97.81 E-value=1.3e-05 Score=61.48 Aligned_cols=81 Identities=22% Similarity=0.217 Sum_probs=54.1
Q ss_pred hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhh-hhH--------HHHHHhhCCCceEEEeeccCCCCc
Q psy12035 27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNII-AKQ--------EYYFASTNGSQISFMWIPSHSNIA 97 (251)
Q Consensus 27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~-~k~--------~~~~~~~~~~~i~~~WvPgH~gI~ 97 (251)
.+.+++|+.+++.|++....... ...-|.+|+..+...+.+.. .+. .+..+..+...|+|.|||+ +
T Consensus 44 ~tn~~aEl~A~~~aL~~a~~~~~-~~v~i~tDS~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~ 118 (141)
T 3hst_B 44 ATNNVAEYRGLIAGLDDAVKLGA-TEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----A 118 (141)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----G
T ss_pred CchHHHHHHHHHHHHHHHHHCCC-ceEEEEeChHHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----c
Confidence 35599999999999986543211 11247788887776554311 111 1112234557899999997 8
Q ss_pred cchHHhHHHhhhhcC
Q psy12035 98 LNDKADQLAKNSINS 112 (251)
Q Consensus 98 GNE~AD~lAk~a~~~ 112 (251)
|||.||+|||+|...
T Consensus 119 ~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 119 RNTYADRLANDAMDA 133 (141)
T ss_dssp GCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999998644
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=97.60 E-value=2.3e-05 Score=60.94 Aligned_cols=80 Identities=13% Similarity=0.062 Sum_probs=52.1
Q ss_pred hhhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHHHhhhhh-h----HH----HH-HHhhCCCceEEEeeccCCC
Q psy12035 26 LDTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLLFSNIIA-K----QE----YY-FASTNGSQISFMWIPSHSN 95 (251)
Q Consensus 26 l~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~~~~~~~-k----~~----~~-~~~~~~~~i~~~WvPgH~g 95 (251)
..+.+++|+.|++.|++........ ..-|.+|+..+...+.+... + .. +. .+... .|.|.|||+
T Consensus 45 ~~tnn~aEl~A~~~aL~~a~~~g~~-~v~i~tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~--~v~~~~V~~--- 118 (149)
T 2ehg_A 45 NSTNNVAEYSGLICLMETMLRLGIS-SPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL--NATLIWVPR--- 118 (149)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHTCC-SCEEEESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH--TCEEEECCG---
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCC-EEEEEeChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC--CEEEEEcCC---
Confidence 4456999999999999765432111 12477888877765543211 0 01 11 11222 499999999
Q ss_pred CccchHHhHHHhhhhcC
Q psy12035 96 IALNDKADQLAKNSINS 112 (251)
Q Consensus 96 I~GNE~AD~lAk~a~~~ 112 (251)
++||.||+|||+|+..
T Consensus 119 -~~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 119 -EENKEADRLSRVAYEL 134 (149)
T ss_dssp -GGCHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHh
Confidence 5899999999988644
No 15
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=57.00 E-value=5.2 Score=28.62 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=20.8
Q ss_pred CCc-cCCCCcccceec-cccCchHHh
Q psy12035 193 PIC-TCGFPLTVKHIF-ECNKYKKFR 216 (251)
Q Consensus 193 ~~C-~Cg~~et~~Hil-~Cp~~~~~R 216 (251)
-.| .||+..+-.|.+ .||......
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~~ 97 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKNY 97 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGGG
T ss_pred ccCCCCCCcCCcccceecCCCCCCcc
Confidence 579 899999999999 999987554
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=33.93 E-value=13 Score=27.82 Aligned_cols=37 Identities=14% Similarity=-0.082 Sum_probs=27.1
Q ss_pred hhhhHHHHHHHHhhhccCCccchhhhccccchHHHHHHH
Q psy12035 27 DTIHHMGIRLISRALKSSPVNSLYAESAILPLSVRRRLL 65 (251)
Q Consensus 27 ~~~~r~~l~~i~~a~rt~~~~~~~~~~~i~p~~l~~~~~ 65 (251)
.+-+++|+.|++.||+........+ -|.+||.++...
T Consensus 43 tTNN~aEl~A~i~aL~~l~~~~~~v--~i~tDSqyVi~w 79 (134)
T 4htu_A 43 GTNNMGEFLAIVHGLRYLKERNSRK--PIYSNSQTAIKW 79 (134)
T ss_dssp ECHHHHHHHHHHHHHHHHHHTTCCC--CEEESCHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhCCCCE--EEEcchHHHHHH
Confidence 3449999999999998765433333 578999887653
No 17
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=26.12 E-value=40 Score=19.58 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=16.8
Q ss_pred CCCCCCc-cCCCCcccceec-cccCch
Q psy12035 189 KTPHPIC-TCGFPLTVKHIF-ECNKYK 213 (251)
Q Consensus 189 ~~~~~~C-~Cg~~et~~Hil-~Cp~~~ 213 (251)
..+...| .||.. .|+- +||.-.
T Consensus 7 ~~~~~~C~~Cgk~---GH~ardCP~~~ 30 (40)
T 1a6b_B 7 QLDRDQCAYCKEK---GHWAKDCPKKP 30 (40)
T ss_dssp SCCSSSCSSSCCT---TCCTTSCSSSC
T ss_pred CCCCCeeeECCCC---CcchhhCcCCc
Confidence 4567889 99953 5999 999753
No 18
>2fqc_A Conotoxin PL14A; alpha-helix, disulfide bonds; NMR {Synthetic}
Probab=24.78 E-value=21 Score=18.55 Aligned_cols=7 Identities=29% Similarity=0.273 Sum_probs=4.1
Q ss_pred hcCcccc
Q psy12035 175 RIGHTRI 181 (251)
Q Consensus 175 rtGH~~~ 181 (251)
|+|||..
T Consensus 12 R~g~GH~ 18 (26)
T 2fqc_A 12 RAGIGHK 18 (26)
T ss_dssp HHTGGGT
T ss_pred hccCCcc
Confidence 5666654
No 19
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.76 E-value=36 Score=21.30 Aligned_cols=18 Identities=33% Similarity=0.814 Sum_probs=13.9
Q ss_pred CCCc-cCCCCcccceec-cccCc
Q psy12035 192 HPIC-TCGFPLTVKHIF-ECNKY 212 (251)
Q Consensus 192 ~~~C-~Cg~~et~~Hil-~Cp~~ 212 (251)
.-.| -||.. .|++ .||.-
T Consensus 7 ~~~C~kCGk~---GH~~k~Cp~~ 26 (55)
T 2ysa_A 7 GYTCFRCGKP---GHYIKNCPTN 26 (55)
T ss_dssp SCCCTTTCCT---TSCGGGCSGG
T ss_pred CCccccCCCc---CcccccCCCC
Confidence 4579 89965 4999 99943
Done!