BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12036
(236 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 32 NSLYAESAI---LPLSVRRRLLFSNIIAKQEYYFASTNGSQISF 72
NS++ ES I P S++ L N I EY+ AST G ++ F
Sbjct: 491 NSIFGESMIEMGAPFSLKG--LLGNPICSPEYWKASTFGGEVGF 532
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 32 NSLYAESAI---LPLSVRRRLLFSNIIAKQEYYFASTNGSQISF 72
NS++ ES I P S++ L N I EY+ AST G ++ F
Sbjct: 495 NSIFGESMIEMGAPFSLKG--LLGNPICSPEYWKASTFGGEVGF 536
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 32 NSLYAESAI---LPLSVRRRLLFSNIIAKQEYYFASTNGSQISF 72
NS++ ES I P S++ L N I EY+ AST G ++ F
Sbjct: 484 NSIFGESMIEMGAPFSLKG--LLGNPICSPEYWKASTFGGEVGF 525
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 32 NSLYAESAI---LPLSVRRRLLFSNIIAKQEYYFASTNGSQISF 72
NS++ ES I P S++ L N I EY+ AST G ++ F
Sbjct: 484 NSIFGESMIEMGAPFSLKG--LLGNPICSPEYWKASTFGGEVGF 525
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 32 NSLYAESAI---LPLSVRRRLLFSNIIAKQEYYFASTNGSQISF 72
NS++ ES I P S++ L N I EY+ AST G ++ F
Sbjct: 483 NSIFGESMIEMGAPFSLKG--LLGNPICSPEYWKASTFGGEVGF 524
>pdb|2QK9|A Chain A, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 18-Mer RnaDNA HYBRID
pdb|2QKK|A Chain A, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|B Chain B, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|E Chain E, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|F Chain F, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|I Chain I, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|J Chain J, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|M Chain M, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|N Chain N, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|R Chain R, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|S Chain S, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|W Chain W, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
Length = 154
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 65 TNGSQISFMWIPSHSNIALNDKADQLAKNS 94
T G I +M +P HS N++AD+LA+
Sbjct: 119 TQGMDIQWMHVPGHSGFIGNEEADRLAREG 148
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 32 NSLYAESAI---LPLSVRRRLLFSNIIAKQEYYFASTNGSQISF 72
NS++ ES I P S++ L N I EY+ AST G ++ F
Sbjct: 515 NSIFGESMIEMGAPFSLKG--LLGNPICSPEYWKASTFGGEVGF 556
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 32 NSLYAESAI---LPLSVRRRLLFSNIIAKQEYYFASTNGSQISF 72
NS++ ES I P S++ L N I EY+ AST G ++ F
Sbjct: 483 NSIFGESMIEMGAPFSLKG--LLGNPICSPEYWKASTFGGEVGF 524
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 32 NSLYAESAI---LPLSVRRRLLFSNIIAKQEYYFASTNGSQISF 72
NS++ ES I P S++ L N I EY+ AST G ++ F
Sbjct: 515 NSIFGESMIEMGAPFSLKG--LLGNPICSPEYWKASTFGGEVGF 556
>pdb|2E4L|A Chain A, Thermodynamic And Structural Analysis Of Thermolabile
Rnase Hi From Shewanella Oneidensis Mr-1
Length = 158
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 69 QISFMWIPSHSNIALNDKADQLAKNSINS 97
QI + W+ H+ A N++ DQLA+ + +
Sbjct: 117 QIDWRWVKGHAGHAENERCDQLARAAAEA 145
>pdb|1O1W|A Chain A, Solution Structure Of The Rnase H Domain Of The Hiv-1
Reverse Transcriptase In The Presence Of Magnesium
Length = 138
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSI 95
+ +I K++ Y A W+P+H I N++ D+L I
Sbjct: 99 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGI 134
>pdb|3HYF|A Chain A, Crystal Structure Of Hiv-1 Rnase H P15 With Engineered E.
Coli Loop And Active Site Inhibitor
pdb|3QIN|A Chain A, Crystal Structure Of Hiv-1 Rnase H P15 With Engineered E.
Coli Loop And Pyrimidinol Carboxylic Acid Inhibitor
pdb|3QIO|A Chain A, Crystal Structure Of Hiv-1 Rnase H With Engineered E. Coli
Loop And N- Hydroxy Quinazolinedione Inhibitor
Length = 150
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKLL 100
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 110 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVLF 150
>pdb|2QKB|A Chain A, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 20-Mer RnaDNA HYBRID
pdb|2QKB|B Chain B, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 20-Mer RnaDNA HYBRID
Length = 154
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 65 TNGSQISFMWIPSHSNIALNDKADQLAKNS 94
T G I + +P HS N++AD+LA+
Sbjct: 119 TQGXDIQWXHVPGHSGFIGNEEADRLAREG 148
>pdb|2JLE|A Chain A, Novel Indazole Nnrtis Created Using Molecular Template
Hybridization Based On Crystallographic Overlays
pdb|2JLE|B Chain B, Novel Indazole Nnrtis Created Using Molecular Template
Hybridization Based On Crystallographic Overlays
Length = 566
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKLL 100
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 521 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVLF 561
>pdb|3DI6|A Chain A, Hiv-1 Rt With Pyridazinone Non-Nucleoside Inhibitor
pdb|3DYA|A Chain A, Hiv-1 Rt With Non-Nucleoside Inhibitor Annulated Pyrazole
1
pdb|3E01|A Chain A, Hiv-Rt With Non-Nucleoside Inhibitor Annulated Pyrazole 2
pdb|3M8P|A Chain A, Hiv-1 Rt With Nnrti Tmc-125
pdb|3M8Q|A Chain A, Hiv-1 Rt With Aminopyrimidine Nnrti
pdb|3NBP|A Chain A, Hiv-1 Reverse Transcriptase With Aminopyrimidine Inhibitor
2
Length = 561
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKLL 100
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 521 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVLF 561
>pdb|3KLH|A Chain A, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Post-Translocation
Aztmp-Terminated Dna (Complex P)
Length = 564
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKLL 100
+ +I K++ Y A W+P+H I N++ D+L I L+
Sbjct: 523 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKILV 563
>pdb|1JLE|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase
pdb|1JLG|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
Length = 560
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 521 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 560
>pdb|3DMJ|A Chain A, Crystal Structure Of Hiv-1 V106a And Y181c Mutant Reverse
Transcriptase In Complex With Gw564511
Length = 560
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 521 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 560
>pdb|1S1T|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
pdb|1S1U|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1S1V|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
pdb|3DOL|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw695634
Length = 560
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 521 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 560
>pdb|1JKH|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Dmp-266(Efavirenz)
pdb|1JLA|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
pdb|1JLB|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1JLC|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Pett-2
Length = 560
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 521 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 560
>pdb|3FFI|A Chain A, Hiv-1 Rt With Pyridone Non-Nucleoside Inhibitor
Length = 561
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 522 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 561
>pdb|3DRR|A Chain A, Hiv Reverse Transcriptase Y181c Mutant In Complex With
Inhibitor R8e
Length = 563
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 524 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 563
>pdb|1JLF|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 521 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 560
>pdb|2YNF|A Chain A, Hiv-1 Reverse Transcriptase Y188l Mutant In Complex With
Inhibitor Gsk560
Length = 563
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 524 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 563
>pdb|1S1W|A Chain A, Crystal Structure Of V106a Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
Length = 560
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 521 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 560
>pdb|1S1X|A Chain A, Crystal Structure Of V108i Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 521 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 560
>pdb|3KJV|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Dna
pdb|3KK1|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Nuceotide
Inhibitor Gs- 9148-Diphosphate Bound In Nucleotide Site
pdb|3KK2|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Datp Bound In
The Nucleotide Binding Site
pdb|3KK3|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Gs-9148
Terminated Primer
Length = 560
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 521 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 560
>pdb|2RKI|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Triazole Derived Nnrti
pdb|3LAK|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Heterocycle Pyrimidinedione
Non-Nucleoside Inhibitor
pdb|3LAK|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Heterocycle Pyrimidinedione
Non-Nucleoside Inhibitor
pdb|3LAL|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Ethyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAL|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Ethyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAM|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Propyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAM|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Propyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAN|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Butyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAN|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Butyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3MEC|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Tmc125
pdb|3MEE|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Tmc278
pdb|2WON|A Chain A, Crystal Structure Of Uk-453061 Bound To Hiv-1 Reverse
Transcriptase (Wild-Type).
pdb|3QIP|A Chain A, Structure Of Hiv-1 Reverse Transcriptase In Complex With
An Rnase H Inhibitor And Nevirapine
pdb|4I7F|A Chain A, Hiv-1 Reverse Transcriptase In Complex With A Phosphonate
Analog Of Nevirapine
Length = 560
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 521 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 560
>pdb|1REV|A Chain A, Hiv-1 Reverse Transcriptase
pdb|1RT2|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Tnk-651
pdb|1RT1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Mkc-442
pdb|1KLM|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Bhap U-90152
pdb|1RT4|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc781
pdb|1RT5|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc10
pdb|1RT6|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc38
pdb|1RT7|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc84
pdb|1DTT|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-2 (Pett130a94)
pdb|1DTQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-1 (Pett131a94)
pdb|1C1B|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gca-186
pdb|1C1C|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Tnk-6123
pdb|1C0T|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+21.1326
pdb|1C0U|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+50.0934
pdb|1EP4|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With S-1153
pdb|1JLQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With 739w94
pdb|1TKT|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw426318
pdb|1TKX|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw490745
pdb|1TKZ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw429576
pdb|1TL1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw451211
pdb|1TL3|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw450557
pdb|3DLE|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gf128590.
pdb|3DLG|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw564511.
pdb|1RTJ|A Chain A, Mechanism Of Inhibition Of Hiv-1 Reverse Transcriptase By
Non-Nucleoside Inhibitors
pdb|1RTI|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1VRT|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1RTH|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1VRU|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
Length = 560
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 521 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 560
>pdb|1LWC|A Chain A, Crystal Structure Of M184v Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 521 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 560
>pdb|3MED|A Chain A, Hiv-1 K103n Reverse Transcriptase In Complex With Tmc125
pdb|3MEG|A Chain A, Hiv-1 K103n Reverse Transcriptase In Complex With Tmc278
pdb|2WOM|A Chain A, Crystal Structure Of Uk-453061 Bound To Hiv-1 Reverse
Transcriptase (K103n)
Length = 560
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 521 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 560
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 54 IIAKQEYYFASTNGS-QISFMWIPSHSNIALNDKADQLAKNSINSKLLDFYIQ 105
I K E Y TNG + WIP N L D D + + N +L+F+I+
Sbjct: 168 IPFKDESYL--TNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIE 218
>pdb|2RF2|A Chain A, Hiv Reverse Transcriptase In Complex With Inhibitor 7e
(Nnrti)
pdb|3C6T|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 14
pdb|3C6U|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 22
pdb|3DRP|A Chain A, Hiv Reverse Transcriptase In Complex With Inhibitor R8e
pdb|3I0R|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 3
pdb|3I0S|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 7
pdb|3T19|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Wild
Type) In Complex With Inhibitor M05
pdb|3T19|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Wild
Type) In Complex With Inhibitor M05
pdb|2YNG|A Chain A, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk560
pdb|2YNH|A Chain A, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk500
pdb|2YNI|A Chain A, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk952
Length = 563
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 524 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 563
>pdb|1LWE|A Chain A, Crystal Structure Of M41lT215Y MUTANT HIV-1 Reverse
Transcriptase (Rtmn) In Complex With Nevirapine
Length = 560
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 521 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 560
>pdb|3KLE|A Chain A, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|E Chain E, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|I Chain I, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|M Chain M, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLG|A Chain A, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Pre-Translocation
Aztmp-Terminated Dna (Complex N)
pdb|3KLG|E Chain E, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Pre-Translocation
Aztmp-Terminated Dna (Complex N)
pdb|3KLI|A Chain A, Crystal Structure Of Unliganded Azt-Resistant Hiv-1
Reverse Transcriptase
Length = 562
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 523 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 562
>pdb|1LW0|A Chain A, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1LW2|A Chain A, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With 1051u91
Length = 560
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 521 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 560
>pdb|1RT3|A Chain A, Azt Drug Resistant Hiv-1 Reverse Transcriptase Complexed
With 1051u91
Length = 560
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 521 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 560
>pdb|3DM2|A Chain A, Crystal Structure Of Hiv-1 K103n Mutant Reverse
Transcriptase In Complex With Gw564511.
pdb|3DOK|A Chain A, Crystal Structure Of K103n Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw678248
Length = 560
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 521 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 560
>pdb|1LWF|A Chain A, Crystal Structure Of A Mutant Hiv-1 Reverse Transcriptase
(rtmq+m184v: M41l/d67n/k70r/m184v/t215y) In Complex With
Nevirapine
Length = 560
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 521 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 560
>pdb|3DRS|A Chain A, Hiv Reverse Transcriptase K103n Mutant In Complex With
Inhibitor R8d
pdb|3LP0|A Chain A, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3LP1|A Chain A, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3LP2|A Chain A, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3T1A|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (K103n
Mutant) In Complex With Inhibitor M05
pdb|3T1A|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (K103n
Mutant) In Complex With Inhibitor M05
pdb|3TAM|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (K103n
Mutant) In Complex With Inhibitor M06
Length = 563
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 50 LFSNIIAKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKL 99
+ +I K++ Y A W+P+H I N++ D+L I L
Sbjct: 524 IIEQLIKKEKVYLA----------WVPAHKGIGGNEQVDKLVSAGIRKVL 563
>pdb|2J5L|A Chain A, Structure Of A Plasmodium Falciparum Apical Membrane
Antigen 1-Fab F8.12.19 Complex
Length = 581
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 185 PLTVKHIFECNKYK-KFREKLSLPSIEIALSDNENMAEKTI 224
P+ V+H F C+ YK + ++++ S I L+DN++ K I
Sbjct: 402 PIEVEHNFPCSLYKDEIKKEIERESKRIKLNDNDDEGNKKI 442
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,655,344
Number of Sequences: 62578
Number of extensions: 247349
Number of successful extensions: 731
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 726
Number of HSP's gapped (non-prelim): 51
length of query: 236
length of database: 14,973,337
effective HSP length: 96
effective length of query: 140
effective length of database: 8,965,849
effective search space: 1255218860
effective search space used: 1255218860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)