BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1204
         (71 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2K2D|A Chain A, Solution Nmr Structure Of C-Terminal Domain Of Human
          Pirh2. Northeast Structural Genomics Consortium (Nesg)
          Target Ht2c
          Length = 79

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 46/60 (76%)

Query: 1  MDMTPLWRQMDEEIASTPMPEEYKNVILYVLCKDCHKESKVLYHIIGLKCEHCGSYNTCR 60
          +DMT  WRQ+D+E+A TPMP EY+N+ + +LC DC+  S V +HI+G+KC+ C SYNT +
Sbjct: 9  LDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQ 68


>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
          Length = 361

 Score = 25.4 bits (54), Expect = 8.2,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 21  EEYKNVILYVLCKDCHKESKVLYHIIGLKCEHC 53
           E +K  IL++     H +++ +    GLK E C
Sbjct: 162 ESFKGKILFIFIDSDHTDNQRILEFFGLKKEEC 194


>pdb|2K18|A Chain A, Solution Structure Of Bb' Domains Of Human Protein
           Disulfide Isomerase
          Length = 228

 Score = 25.4 bits (54), Expect = 8.2,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 21  EEYKNVILYVLCKDCHKESKVLYHIIGLKCEHC 53
           E +K  IL++     H +++ +    GLK E C
Sbjct: 151 ESFKGKILFIFIDSDHTDNQRILEFFGLKKEEC 183


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,338,027
Number of Sequences: 62578
Number of extensions: 74970
Number of successful extensions: 149
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 3
length of query: 71
length of database: 14,973,337
effective HSP length: 41
effective length of query: 30
effective length of database: 12,407,639
effective search space: 372229170
effective search space used: 372229170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)