Query psy1204
Match_columns 71
No_of_seqs 102 out of 281
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 17:04:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k2d_A Ring finger and CHY zin 100.0 2.9E-35 9.9E-40 176.6 3.8 69 1-69 9-77 (79)
2 3a43_A HYPD, hydrogenase nicke 98.6 7.1E-08 2.4E-12 62.0 4.6 59 9-67 47-127 (139)
3 2kdx_A HYPA, hydrogenase/ureas 98.5 2.9E-08 9.8E-13 61.9 2.4 43 24-67 68-110 (119)
4 2gmg_A Hypothetical protein PF 96.5 0.00083 2.8E-08 41.7 1.6 36 24-60 62-97 (105)
5 1twf_L ABC10-alpha, DNA-direct 95.2 0.0062 2.1E-07 35.0 1.3 29 26-55 25-53 (70)
6 3irb_A Uncharacterized protein 95.0 0.022 7.7E-07 36.2 3.4 33 25-61 43-75 (145)
7 3h0g_L DNA-directed RNA polyme 94.5 0.0096 3.3E-07 33.7 0.7 30 26-56 18-47 (63)
8 2lcq_A Putative toxin VAPC6; P 94.2 0.019 6.3E-07 36.6 1.7 27 29-57 132-158 (165)
9 2gnr_A Conserved hypothetical 93.1 0.071 2.4E-06 34.0 3.0 33 25-61 43-75 (145)
10 1gh9_A 8.3 kDa protein (gene M 91.5 0.069 2.4E-06 30.7 1.3 26 28-55 3-28 (71)
11 4ayb_P DNA-directed RNA polyme 91.4 0.075 2.6E-06 28.6 1.2 26 29-54 3-30 (48)
12 3v2d_5 50S ribosomal protein L 90.5 0.16 5.3E-06 28.3 2.1 31 26-61 27-57 (60)
13 3j20_W 30S ribosomal protein S 89.4 0.37 1.3E-05 27.2 3.1 41 24-64 10-51 (63)
14 2zjr_Z 50S ribosomal protein L 89.0 0.25 8.7E-06 27.4 2.2 31 26-61 27-57 (60)
15 1qxf_A GR2, 30S ribosomal prot 88.7 0.43 1.5E-05 27.2 3.0 40 25-64 3-43 (66)
16 3j20_Y 30S ribosomal protein S 87.6 0.3 1E-05 26.0 1.8 28 28-55 18-45 (50)
17 1h7b_A Anaerobic ribonucleotid 86.9 0.21 7.2E-06 38.4 1.3 31 27-57 538-568 (605)
18 1k81_A EIF-2-beta, probable tr 86.5 0.32 1.1E-05 24.2 1.5 14 49-62 2-15 (36)
19 3u5c_b RP61, YS20, 40S ribosom 86.4 0.77 2.6E-05 27.1 3.3 41 24-64 29-70 (82)
20 2kwq_A Protein MCM10 homolog; 85.7 1 3.6E-05 26.9 3.7 41 28-69 47-90 (92)
21 2avu_E Flagellar transcription 85.6 1.5 5E-05 29.5 4.7 29 27-55 132-162 (192)
22 2xzm_6 RPS27E; ribosome, trans 85.3 0.91 3.1E-05 26.7 3.2 41 24-64 27-68 (81)
23 3iz6_X 40S ribosomal protein S 84.1 1.1 3.8E-05 26.6 3.3 41 24-64 31-72 (86)
24 1lko_A Rubrerythrin all-iron(I 83.8 0.82 2.8E-05 29.9 2.9 30 27-58 153-182 (191)
25 3pwf_A Rubrerythrin; non heme 82.7 1.1 3.9E-05 28.9 3.2 28 27-57 136-163 (170)
26 3j21_g 50S ribosomal protein L 78.4 1.5 5.1E-05 23.6 2.2 35 25-63 10-44 (51)
27 2yw8_A RUN and FYVE domain-con 77.1 0.85 2.9E-05 26.0 1.1 32 21-54 11-42 (82)
28 2k4x_A 30S ribosomal protein S 76.4 0.98 3.4E-05 24.4 1.1 28 28-55 17-44 (55)
29 2fiy_A Protein FDHE homolog; F 76.2 1.6 5.3E-05 30.9 2.4 24 29-56 208-231 (309)
30 3flo_B DNA polymerase alpha ca 76.0 1.6 5.5E-05 29.3 2.3 33 23-55 15-57 (206)
31 1vq8_Z 50S ribosomal protein L 75.1 1.2 3.9E-05 26.1 1.3 31 26-56 24-54 (83)
32 1ltl_A DNA replication initiat 74.3 2.6 8.8E-05 28.8 3.1 31 27-57 132-166 (279)
33 1vd4_A Transcription initiatio 73.9 2.2 7.5E-05 21.9 2.1 30 29-60 14-52 (62)
34 3p8b_A DNA-directed RNA polyme 73.2 1.8 6.1E-05 25.4 1.8 24 29-58 23-46 (81)
35 1ryq_A DNA-directed RNA polyme 71.1 2.4 8.1E-05 24.2 1.9 26 28-59 10-35 (69)
36 2d74_B Translation initiation 70.9 1.3 4.4E-05 28.5 0.8 15 48-62 105-119 (148)
37 3cw2_K Translation initiation 70.7 1.3 4.5E-05 28.1 0.9 16 47-62 103-118 (139)
38 1yuz_A Nigerythrin; rubrythrin 69.9 9.5 0.00032 25.1 5.0 43 8-57 154-196 (202)
39 3iz5_l 60S ribosomal protein L 69.6 3.2 0.00011 25.0 2.3 26 26-54 13-38 (94)
40 4a18_A RPL37, ribosomal protei 68.9 3.1 0.00011 25.1 2.2 26 26-54 13-38 (94)
41 2e9h_A EIF-5, eukaryotic trans 68.6 2.1 7.2E-05 27.8 1.5 16 47-62 103-118 (157)
42 3lpe_B DNA-directed RNA polyme 67.9 3.1 0.00011 22.9 1.9 24 31-60 3-26 (59)
43 1vq8_1 50S ribosomal protein L 67.6 3.3 0.00011 22.8 1.9 27 25-54 13-39 (57)
44 1nee_A EIF-2-beta, probable tr 65.8 1.3 4.5E-05 28.1 0.1 16 47-62 102-117 (138)
45 1tot_A CREB-binding protein; z 65.5 2.9 0.0001 22.1 1.4 27 27-58 4-30 (52)
46 1zso_A Hypothetical protein; s 65.1 6.9 0.00024 25.4 3.5 42 21-64 30-88 (164)
47 2con_A RUH-035 protein, NIN on 65.0 5.3 0.00018 23.1 2.6 33 27-62 13-45 (79)
48 2g2k_A EIF-5, eukaryotic trans 64.9 2.4 8.1E-05 27.9 1.2 16 47-62 96-111 (170)
49 6rxn_A Rubredoxin; electron tr 63.9 3.3 0.00011 21.6 1.4 30 28-57 3-40 (46)
50 2gai_A DNA topoisomerase I; zi 63.4 3.8 0.00013 31.4 2.2 34 28-63 555-588 (633)
51 3t7l_A Zinc finger FYVE domain 63.4 0.89 3E-05 26.5 -1.0 24 29-54 20-43 (90)
52 2ayj_A 50S ribosomal protein L 62.8 4.2 0.00014 22.3 1.8 31 28-62 18-48 (56)
53 4gzn_C ZFP-57, zinc finger pro 61.9 4.7 0.00016 21.2 1.9 11 30-40 5-15 (60)
54 2apo_B Ribosome biogenesis pro 61.9 5.8 0.0002 21.9 2.3 24 28-57 5-28 (60)
55 2jr7_A DPH3 homolog; DESR1, CS 60.3 11 0.00037 22.3 3.4 30 28-61 22-58 (89)
56 3m7n_A Putative uncharacterize 60.2 4.5 0.00015 26.0 1.9 35 27-63 138-172 (179)
57 2zkr_2 60S ribosomal protein L 59.7 5.2 0.00018 24.2 2.0 26 26-54 13-38 (97)
58 2jrp_A Putative cytoplasmic pr 59.0 3.3 0.00011 24.2 1.0 9 30-38 32-40 (81)
59 2qkd_A Zinc finger protein ZPR 57.7 11 0.00038 27.7 3.8 42 27-68 10-62 (404)
60 2aus_D NOP10, ribosome biogene 57.3 6.3 0.00022 21.8 1.9 24 28-57 4-27 (60)
61 1qyp_A RNA polymerase II; tran 57.2 7.3 0.00025 20.5 2.1 12 28-39 14-25 (57)
62 3lcz_A YCZA, inhibitor of trap 56.4 8.1 0.00028 20.5 2.2 28 28-59 8-35 (53)
63 3axs_A Probable N(2),N(2)-dime 55.9 8.2 0.00028 27.7 2.8 31 25-55 240-271 (392)
64 2epq_A POZ-, at HOOK-, and zin 55.8 4.4 0.00015 18.9 1.0 12 30-41 11-22 (45)
65 1vfy_A Phosphatidylinositol-3- 55.7 5.5 0.00019 22.0 1.5 22 31-54 13-34 (73)
66 2qkd_A Zinc finger protein ZPR 55.4 14 0.00047 27.1 4.0 42 27-68 218-270 (404)
67 1z2q_A LM5-1; membrane protein 55.4 1.9 6.4E-05 24.6 -0.5 25 28-54 20-44 (84)
68 1pft_A TFIIB, PFTFIIBN; N-term 54.8 3.7 0.00013 21.0 0.7 27 29-55 5-32 (50)
69 1joc_A EEA1, early endosomal a 51.2 6.3 0.00022 24.1 1.4 24 29-54 69-92 (125)
70 2kvh_A Zinc finger and BTB dom 51.1 7 0.00024 15.8 1.2 12 30-41 4-15 (27)
71 3r8s_0 50S ribosomal protein L 51.0 13 0.00044 19.9 2.5 29 27-61 25-53 (56)
72 1x4u_A Zinc finger, FYVE domai 50.4 6.5 0.00022 22.2 1.3 24 29-54 14-37 (84)
73 1m2k_A Silent information regu 50.2 9.2 0.00031 25.6 2.2 29 28-56 120-151 (249)
74 1ma3_A SIR2-AF2, transcription 49.8 8.5 0.00029 25.9 2.0 29 27-55 121-155 (253)
75 1dxg_A Desulforedoxin; non-hem 48.8 12 0.00042 18.0 2.0 14 49-62 8-21 (36)
76 1v5n_A PDI-like hypothetical p 48.5 11 0.00039 21.6 2.1 26 30-60 48-73 (89)
77 1wfk_A Zinc finger, FYVE domai 48.1 9 0.00031 22.0 1.7 23 30-54 10-32 (88)
78 1l8d_A DNA double-strand break 48.1 5.6 0.00019 23.2 0.8 12 47-58 47-58 (112)
79 3zyq_A Hepatocyte growth facto 47.3 8 0.00027 25.6 1.5 23 30-54 165-187 (226)
80 2lv2_A Insulinoma-associated p 47.3 7.7 0.00026 21.8 1.3 13 29-41 28-40 (85)
81 2vl6_A SSO MCM N-TER, minichro 47.3 16 0.00055 24.5 3.1 31 27-57 139-178 (268)
82 1dvp_A HRS, hepatocyte growth 47.0 7.8 0.00027 25.4 1.4 24 29-54 161-184 (220)
83 3j21_e 50S ribosomal protein L 46.8 5.8 0.0002 22.1 0.6 25 27-54 15-39 (62)
84 1yc5_A NAD-dependent deacetyla 46.1 7 0.00024 26.1 1.1 30 27-56 119-154 (246)
85 1q1a_A HST2 protein; ternary c 45.8 8.7 0.0003 26.3 1.5 32 25-56 132-172 (289)
86 2k5c_A Uncharacterized protein 45.1 3.8 0.00013 24.5 -0.3 11 43-55 49-59 (95)
87 1znf_A 31ST zinc finger from X 44.8 7.7 0.00026 15.5 0.8 12 31-42 3-14 (27)
88 2kvf_A Zinc finger and BTB dom 44.3 11 0.00037 15.2 1.2 13 30-42 4-16 (28)
89 1dl6_A Transcription factor II 44.1 8.9 0.00031 20.5 1.1 27 30-56 12-39 (58)
90 2epr_A POZ-, at HOOK-, and zin 43.6 4.3 0.00015 19.3 -0.2 13 29-41 12-24 (48)
91 2m0d_A Zinc finger and BTB dom 43.1 12 0.00041 15.0 1.3 13 30-42 4-16 (30)
92 1y02_A CARP2, FYVE-ring finger 42.8 9.2 0.00031 23.5 1.2 24 30-55 20-43 (120)
93 1x4s_A Protein FON, zinc finge 42.8 19 0.00064 19.7 2.3 21 30-55 12-34 (59)
94 1rik_A E6APC1 peptide; E6-bind 42.7 11 0.00038 15.1 1.2 13 30-42 3-15 (29)
95 2akl_A PHNA-like protein PA012 42.5 8.2 0.00028 24.6 0.9 26 30-56 28-53 (138)
96 3cc2_Z 50S ribosomal protein L 42.2 9.5 0.00033 23.7 1.2 29 26-54 57-85 (116)
97 2m0f_A Zinc finger and BTB dom 41.6 12 0.00042 14.8 1.2 12 30-41 3-14 (29)
98 2ct7_A Ring finger protein 31; 41.4 12 0.00043 21.0 1.5 26 29-54 25-50 (86)
99 2ctd_A Zinc finger protein 512 41.2 6.7 0.00023 22.0 0.3 27 29-55 34-70 (96)
100 2kn9_A Rubredoxin; metalloprot 40.3 16 0.00054 21.2 1.8 14 27-40 25-38 (81)
101 1wjv_A Cell growth regulating 40.3 20 0.00069 20.8 2.3 12 29-40 37-48 (79)
102 2kvg_A Zinc finger and BTB dom 39.9 10 0.00035 15.4 0.8 12 30-41 4-15 (27)
103 1vk6_A NADH pyrophosphatase; 1 39.1 10 0.00035 25.7 1.1 28 29-56 107-134 (269)
104 3j21_i 50S ribosomal protein L 38.9 16 0.00053 21.4 1.7 11 49-59 37-47 (83)
105 1q14_A HST2 protein; histone d 38.7 9.3 0.00032 27.4 0.8 32 25-56 140-180 (361)
106 2yqq_A Zinc finger HIT domain- 38.6 15 0.00052 19.8 1.5 20 30-56 13-32 (56)
107 1ard_A Yeast transcription fac 38.4 11 0.00039 15.0 0.8 13 30-42 3-15 (29)
108 2lvu_A Zinc finger and BTB dom 44.5 6.7 0.00023 15.7 0.0 13 30-42 3-15 (26)
109 1e8j_A Rubredoxin; iron-sulfur 37.8 15 0.00053 19.3 1.4 12 29-40 3-14 (52)
110 4ets_A Ferric uptake regulatio 37.6 28 0.00095 21.7 2.9 39 2-40 68-118 (162)
111 1dx8_A Rubredoxin; electron tr 37.6 27 0.00093 19.4 2.5 34 28-61 6-54 (70)
112 2elx_A Zinc finger protein 406 37.4 15 0.00053 15.5 1.2 12 30-41 8-19 (35)
113 2gqj_A Zinc finger protein KIA 37.4 6.4 0.00022 21.8 -0.2 12 29-40 24-35 (98)
114 1yop_A KTI11P; zinc finger, me 37.2 17 0.00059 21.0 1.7 30 28-61 22-58 (83)
115 1paa_A Yeast transcription fac 36.9 13 0.00043 15.1 0.9 12 31-42 4-15 (30)
116 1twf_I B12.6, DNA-directed RNA 36.9 23 0.00077 21.4 2.3 9 30-38 5-13 (122)
117 2m0e_A Zinc finger and BTB dom 36.8 12 0.00042 14.8 0.8 12 31-42 4-15 (29)
118 2elm_A Zinc finger protein 406 36.3 17 0.00059 16.0 1.3 14 29-42 9-22 (37)
119 3u31_A SIR2A, transcriptional 36.3 17 0.00057 25.2 1.8 29 27-56 152-190 (290)
120 4bbr_M Transcription initiatio 35.7 14 0.00049 26.0 1.4 12 49-60 23-34 (345)
121 2elq_A Zinc finger protein 406 34.7 17 0.00059 15.6 1.2 14 29-42 9-22 (36)
122 3ga8_A HTH-type transcriptiona 34.7 17 0.00058 20.0 1.3 11 48-58 3-13 (78)
123 3ghf_A Septum site-determining 34.6 33 0.0011 20.6 2.8 29 2-32 26-54 (120)
124 2els_A Zinc finger protein 406 34.6 19 0.00065 15.4 1.3 14 29-42 9-22 (36)
125 1klr_A Zinc finger Y-chromosom 34.4 13 0.00045 14.8 0.7 13 30-42 3-15 (30)
126 3mpx_A FYVE, rhogef and PH dom 33.9 8.6 0.00029 27.0 0.0 24 29-54 375-398 (434)
127 2elr_A Zinc finger protein 406 33.7 15 0.00051 15.7 0.9 13 30-42 10-22 (36)
128 1s24_A Rubredoxin 2; electron 33.6 19 0.00064 21.1 1.5 14 27-40 33-46 (87)
129 3k7a_M Transcription initiatio 33.4 14 0.00047 25.9 1.0 10 49-58 23-32 (345)
130 3o9x_A Uncharacterized HTH-typ 33.4 21 0.00071 20.9 1.7 11 48-58 3-13 (133)
131 2lvr_A Zinc finger and BTB dom 39.6 8.9 0.00031 15.6 0.0 14 30-43 4-17 (30)
132 2lvt_A Zinc finger and BTB dom 39.6 8.9 0.00031 15.6 0.0 14 30-43 3-16 (29)
133 1ffk_W Ribosomal protein L37AE 33.0 27 0.00092 19.8 2.0 29 25-54 23-52 (73)
134 2e5r_A Dystrobrevin alpha; ZZ 32.8 15 0.00052 19.9 0.9 27 30-59 12-38 (63)
135 3iz5_m 60S ribosomal protein L 32.8 22 0.00074 21.1 1.6 9 30-38 37-45 (92)
136 2v3b_B Rubredoxin 2, rubredoxi 32.7 24 0.00081 18.7 1.7 12 29-40 3-14 (55)
137 3mp2_A Non-structural protein 32.7 32 0.0011 23.2 2.7 33 27-61 89-134 (211)
138 2dip_A Zinc finger SWIM domain 32.5 17 0.00058 21.5 1.1 26 30-58 32-57 (98)
139 3eqt_A ATP-dependent RNA helic 32.2 21 0.00073 22.7 1.7 25 16-40 54-80 (145)
140 1srk_A Zinc finger protein ZFP 32.0 21 0.00072 15.1 1.2 13 30-42 8-20 (35)
141 2elp_A Zinc finger protein 406 31.8 21 0.0007 15.4 1.2 14 29-42 9-22 (37)
142 2f9y_B Acetyl-coenzyme A carbo 31.6 16 0.00055 25.4 1.1 29 28-57 23-53 (304)
143 2wbt_A B-129; zinc finger; 2.7 31.6 22 0.00074 20.1 1.5 27 29-55 74-108 (129)
144 1p7a_A BF3, BKLF, kruppel-like 31.4 17 0.00059 15.6 0.9 13 30-42 12-24 (37)
145 3glr_A NAD-dependent deacetyla 31.2 24 0.00082 24.4 1.9 32 25-56 135-172 (285)
146 1wge_A Hypothetical protein 26 31.0 38 0.0013 19.5 2.5 30 28-61 29-65 (83)
147 3jyw_9 60S ribosomal protein L 31.0 20 0.00069 20.3 1.3 11 49-59 28-38 (72)
148 2elv_A Zinc finger protein 406 30.9 23 0.00077 15.2 1.2 14 29-42 9-22 (36)
149 2elt_A Zinc finger protein 406 30.6 22 0.00076 15.1 1.2 14 29-42 9-22 (36)
150 2jne_A Hypothetical protein YF 30.5 44 0.0015 20.2 2.8 9 30-38 33-41 (101)
151 2kfq_A FP1; protein, de novo p 30.2 14 0.00049 15.7 0.5 12 31-42 4-15 (32)
152 1rim_A E6APC2 peptide; E6-bind 30.1 17 0.00059 15.6 0.7 12 31-42 4-15 (33)
153 3h7h_A Transcription elongatio 29.8 5.7 0.0002 24.7 -1.3 35 18-56 8-42 (120)
154 1yk4_A Rubredoxin, RD; electro 29.7 30 0.001 18.1 1.8 11 30-40 3-13 (52)
155 1nkw_Y 50S ribosomal protein L 29.6 24 0.00081 20.0 1.4 34 19-56 5-42 (73)
156 3v2d_4 50S ribosomal protein L 29.6 20 0.00068 20.3 1.1 35 20-58 6-44 (71)
157 3h0g_I DNA-directed RNA polyme 29.4 24 0.00081 21.1 1.4 14 28-41 25-38 (113)
158 2ct0_A Non-SMC element 1 homol 29.3 27 0.00091 19.4 1.6 28 29-56 28-61 (74)
159 3iuf_A Zinc finger protein UBI 29.1 25 0.00086 16.6 1.3 14 30-43 8-21 (48)
160 1fv5_A First zinc finger of U- 29.1 15 0.00051 17.4 0.4 15 29-43 8-22 (36)
161 1tfi_A Transcriptional elongat 29.0 22 0.00076 18.4 1.1 14 48-61 10-23 (50)
162 3ny3_A E3 ubiquitin-protein li 28.8 23 0.0008 19.9 1.3 12 26-37 14-25 (75)
163 2gag_D Heterotetrameric sarcos 28.5 20 0.00068 21.6 1.0 20 28-47 2-21 (99)
164 3cng_A Nudix hydrolase; struct 28.4 26 0.00089 21.6 1.6 25 30-54 4-32 (189)
165 2fc7_A ZZZ3 protein; structure 28.4 26 0.0009 19.9 1.5 25 28-55 20-44 (82)
166 1njq_A Superman protein; zinc- 28.2 28 0.00095 15.3 1.3 13 30-42 7-19 (39)
167 1pqv_S STP-alpha, transcriptio 28.0 38 0.0013 23.5 2.5 14 27-40 266-279 (309)
168 2vrw_B P95VAV, VAV1, proto-onc 27.8 19 0.00066 25.1 0.9 25 29-54 357-381 (406)
169 2en2_A B-cell lymphoma 6 prote 27.7 28 0.00095 15.4 1.3 14 29-42 11-24 (42)
170 2epc_A Zinc finger protein 32; 27.5 27 0.00092 15.4 1.2 14 29-42 11-24 (42)
171 2epv_A Zinc finger protein 268 27.4 27 0.00094 15.8 1.2 14 29-42 12-25 (44)
172 2ept_A Zinc finger protein 32; 27.3 28 0.00095 15.4 1.2 14 29-42 10-23 (41)
173 2eof_A Zinc finger protein 268 27.2 29 0.00098 15.5 1.3 14 29-42 12-25 (44)
174 2d9k_A FLN29 gene product; zin 27.1 31 0.001 18.3 1.5 12 29-40 17-28 (75)
175 1llm_C Chimera of ZIF23-GCN4; 27.0 15 0.00053 19.4 0.3 11 30-40 4-14 (88)
176 2xzm_9 RPS31E; ribosome, trans 27.0 28 0.00096 22.9 1.6 27 29-55 113-139 (189)
177 2f42_A STIP1 homology and U-bo 26.5 44 0.0015 21.6 2.5 50 4-56 88-150 (179)
178 2em4_A Zinc finger protein 28 26.5 28 0.00097 15.9 1.2 13 29-41 12-24 (46)
179 3ir9_A Peptide chain release f 26.4 27 0.00093 22.2 1.4 36 20-56 69-112 (166)
180 2ytp_A Zinc finger protein 484 26.2 29 0.00099 15.8 1.2 13 29-41 12-24 (46)
181 3izc_m 60S ribosomal protein R 26.2 31 0.0011 20.4 1.5 10 29-38 36-45 (92)
182 3k1f_M Transcription initiatio 26.1 26 0.0009 23.5 1.3 9 49-57 23-31 (197)
183 2emb_A Zinc finger protein 473 26.0 32 0.0011 15.5 1.3 14 29-42 12-25 (44)
184 2elo_A Zinc finger protein 406 25.8 19 0.00066 15.5 0.5 13 30-42 10-22 (37)
185 1z60_A TFIIH basal transcripti 25.8 33 0.0011 18.5 1.5 23 31-56 17-39 (59)
186 2eow_A Zinc finger protein 347 25.7 32 0.0011 15.6 1.3 13 29-41 12-24 (46)
187 2eoy_A Zinc finger protein 473 24.9 32 0.0011 15.6 1.2 13 29-41 12-24 (46)
188 1p91_A Ribosomal RNA large sub 24.6 30 0.001 22.0 1.4 27 30-58 3-29 (269)
189 2emx_A Zinc finger protein 268 24.5 32 0.0011 15.5 1.2 13 29-41 10-22 (44)
190 2en3_A ZFP-95, zinc finger pro 24.5 33 0.0011 15.5 1.2 13 29-41 12-24 (46)
191 4a17_Y RPL37A, 60S ribosomal p 24.5 32 0.0011 20.8 1.4 12 27-38 34-45 (103)
192 3nis_A E3 ubiquitin-protein li 24.5 31 0.0011 19.8 1.3 12 26-37 18-29 (82)
193 2emj_A Zinc finger protein 28 24.4 32 0.0011 15.6 1.2 13 29-41 12-24 (46)
194 1jbi_A Cochlin, COCH-5B2; alph 24.3 51 0.0018 19.4 2.3 33 27-61 3-36 (100)
195 2emi_A Zinc finger protein 484 24.3 34 0.0012 15.5 1.2 13 29-41 12-24 (46)
196 2ytf_A Zinc finger protein 268 24.2 34 0.0012 15.5 1.2 14 29-42 12-25 (46)
197 2ep3_A Zinc finger protein 484 24.2 33 0.0011 15.5 1.2 13 29-41 12-24 (46)
198 2eos_A B-cell lymphoma 6 prote 24.1 26 0.00088 15.6 0.8 13 30-42 12-24 (42)
199 2bx9_A Anti-trap, AT, tryptoph 24.0 86 0.0029 16.3 3.1 29 28-60 8-36 (53)
200 1v54_F VI, cytochrome C oxidas 24.0 32 0.0011 20.4 1.3 12 48-59 80-91 (98)
201 2epw_A Zinc finger protein 268 23.9 35 0.0012 15.4 1.2 13 29-41 12-24 (46)
202 2yto_A Zinc finger protein 484 23.8 34 0.0012 15.6 1.2 13 29-41 12-24 (46)
203 1faq_A RAF-1; transferase, ser 23.8 42 0.0014 16.6 1.6 21 29-54 14-34 (52)
204 2yts_A Zinc finger protein 484 23.6 35 0.0012 15.4 1.2 14 29-42 12-25 (46)
205 2ab3_A ZNF29; zinc finger prot 23.6 29 0.001 13.6 0.8 12 30-41 3-16 (29)
206 2em3_A Zinc finger protein 28 23.6 35 0.0012 15.5 1.2 14 29-42 12-25 (46)
207 2yrj_A Zinc finger protein 473 23.6 35 0.0012 15.4 1.2 13 29-41 12-24 (46)
208 2yu5_A Zinc finger protein 473 23.6 35 0.0012 15.3 1.2 13 29-41 12-24 (44)
209 2em7_A Zinc finger protein 224 23.5 35 0.0012 15.5 1.2 13 29-41 12-24 (46)
210 2eor_A Zinc finger protein 224 23.5 38 0.0013 15.3 1.3 13 29-41 12-24 (46)
211 1yui_A GAGA-factor; complex (D 23.5 37 0.0013 16.2 1.3 14 29-42 24-37 (54)
212 3qt1_I DNA-directed RNA polyme 23.4 36 0.0012 21.0 1.6 26 29-54 24-53 (133)
213 3u50_C Telomerase-associated p 23.1 32 0.0011 22.2 1.3 28 27-56 40-68 (172)
214 2el5_A Zinc finger protein 268 23.1 37 0.0013 14.9 1.2 14 29-42 10-23 (42)
215 2emf_A Zinc finger protein 484 23.0 36 0.0012 15.5 1.2 13 29-41 12-24 (46)
216 2ytb_A Zinc finger protein 32; 23.0 29 0.00099 15.3 0.8 13 30-42 12-24 (42)
217 2eoo_A ZFP-95, zinc finger pro 23.0 37 0.0013 15.4 1.2 13 29-41 12-24 (46)
218 2yso_A ZFP-95, zinc finger pro 22.7 40 0.0014 15.2 1.3 13 29-41 12-24 (46)
219 2epu_A Zinc finger protein 32; 22.7 29 0.00099 15.7 0.8 14 29-42 12-25 (45)
220 2wjy_A Regulator of nonsense t 22.6 18 0.00062 28.2 -0.0 15 48-62 67-81 (800)
221 2dmd_A Zinc finger protein 64, 22.3 17 0.00059 19.3 -0.1 42 29-70 36-96 (96)
222 2yte_A Zinc finger protein 473 22.2 32 0.0011 15.2 0.9 12 30-41 11-22 (42)
223 2emh_A Zinc finger protein 484 22.2 40 0.0014 15.2 1.3 13 29-41 12-24 (46)
224 2eq0_A Zinc finger protein 347 22.1 42 0.0014 15.2 1.3 13 29-41 12-24 (46)
225 2enf_A Zinc finger protein 347 22.0 30 0.001 15.7 0.8 13 30-42 13-25 (46)
226 2eox_A Zinc finger protein 473 22.0 31 0.001 15.5 0.8 14 29-42 12-25 (44)
227 2enc_A Zinc finger protein 224 21.9 40 0.0014 15.2 1.2 13 29-41 12-24 (46)
228 2en8_A Zinc finger protein 224 21.8 42 0.0015 15.1 1.3 13 29-41 12-24 (46)
229 2em9_A Zinc finger protein 224 21.8 41 0.0014 15.2 1.2 13 29-41 12-24 (46)
230 2em2_A Zinc finger protein 28 21.7 41 0.0014 15.3 1.2 13 29-41 12-24 (46)
231 2yu8_A Zinc finger protein 347 21.6 41 0.0014 15.2 1.2 13 29-41 12-24 (46)
232 2ene_A Zinc finger protein 347 21.6 41 0.0014 15.2 1.2 13 29-41 12-24 (46)
233 2dkt_A Ring finger and CHY zin 21.5 47 0.0016 21.1 1.8 24 27-55 56-79 (143)
234 2ema_A Zinc finger protein 347 21.5 41 0.0014 15.2 1.2 13 29-41 12-24 (46)
235 2em8_A Zinc finger protein 224 21.4 41 0.0014 15.3 1.2 13 29-41 12-24 (46)
236 4ddu_A Reverse gyrase; topoiso 21.4 19 0.00065 29.1 -0.1 33 18-55 2-34 (1104)
237 2ytk_A Zinc finger protein 347 21.4 41 0.0014 15.2 1.2 13 29-41 12-24 (46)
238 2en7_A Zinc finger protein 268 21.4 32 0.0011 15.3 0.8 13 30-42 13-25 (44)
239 2eoz_A Zinc finger protein 473 21.3 32 0.0011 15.7 0.8 13 29-41 12-24 (46)
240 2ds5_A CLPX, ATP-dependent CLP 21.1 51 0.0017 17.3 1.6 6 49-54 13-18 (51)
241 2emg_A Zinc finger protein 484 21.1 34 0.0011 15.5 0.8 13 30-42 13-25 (46)
242 2ytj_A Zinc finger protein 484 20.8 43 0.0015 15.1 1.2 13 29-41 12-24 (46)
243 2csh_A Zinc finger protein 297 20.8 24 0.00082 19.3 0.3 12 29-40 37-48 (110)
244 2emp_A Zinc finger protein 347 20.8 44 0.0015 15.1 1.2 13 29-41 12-24 (46)
245 2emy_A Zinc finger protein 268 20.7 44 0.0015 15.1 1.2 13 29-41 12-24 (46)
246 2eml_A Zinc finger protein 28 20.7 43 0.0015 15.1 1.2 13 29-41 12-24 (46)
247 2ytg_A ZFP-95, zinc finger pro 20.6 46 0.0016 15.0 1.3 13 29-41 12-24 (46)
248 2jvx_A NF-kappa-B essential mo 20.6 32 0.0011 16.0 0.7 8 49-56 5-12 (28)
249 2eme_A Zinc finger protein 473 20.5 45 0.0015 15.0 1.2 13 29-41 12-24 (46)
250 2emm_A ZFP-95, zinc finger pro 20.4 45 0.0015 15.0 1.2 13 29-41 12-24 (46)
251 3nw0_A Non-structural maintena 20.4 27 0.00094 23.4 0.5 28 29-56 193-226 (238)
252 2lo3_A SAGA-associated factor 20.4 33 0.0011 17.8 0.7 10 31-40 19-28 (44)
253 2el4_A Zinc finger protein 268 20.3 44 0.0015 15.0 1.2 13 29-41 12-24 (46)
254 4b6d_A RAC GTPase-activating p 20.3 60 0.0021 17.3 1.9 24 29-54 19-42 (61)
255 2y69_F Cytochrome C oxidase su 20.2 43 0.0015 20.9 1.4 12 48-59 111-122 (129)
256 2em5_A ZFP-95, zinc finger pro 20.1 45 0.0015 15.1 1.2 13 29-41 12-24 (46)
No 1
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=176.64 Aligned_cols=69 Identities=46% Similarity=0.934 Sum_probs=43.0
Q ss_pred CChHHHHHHHHHHHHcCCCCHhhhcceeeEEcCCCCCceeeceEeecccCCCCCCcceeeecCCCCCCC
Q psy1204 1 MDMTPLWRQMDEEIASTPMPEEYKNVILYVLCKDCHKESKVLYHIIGLKCEHCGSYNTCRIKKPNGQES 69 (71)
Q Consensus 1 ~dm~~~~~~lD~~i~~~pmP~~y~~~~v~i~CndC~~~s~v~~h~~g~kCp~C~Synt~ii~g~~~~~~ 69 (71)
+||+.+|++||++||++|||++|++++|.|+||||+++|.+.||++|||||.|+||||++++|+..|.+
T Consensus 9 ~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G~~~~~~ 77 (79)
T 2k2d_A 9 LDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGGRRISLD 77 (79)
T ss_dssp ------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHhCCEeEEECCCCCCCccCCceeecccCcCCCCcCeEecCCCCCCCC
Confidence 599999999999999999999999999999999999999999999999999999999999999987754
No 2
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=98.56 E-value=7.1e-08 Score=61.95 Aligned_cols=59 Identities=24% Similarity=0.332 Sum_probs=42.7
Q ss_pred HHHHHHHcCCCCHh---hhcceeeEEcCCCCCceeece-----------E--ee------cccCCCCCCcceeeecCCCC
Q psy1204 9 QMDEEIASTPMPEE---YKNVILYVLCKDCHKESKVLY-----------H--II------GLKCEHCGSYNTCRIKKPNG 66 (71)
Q Consensus 9 ~lD~~i~~~pmP~~---y~~~~v~i~CndC~~~s~v~~-----------h--~~------g~kCp~C~Synt~ii~g~~~ 66 (71)
.+|...+.+.+-.. ....++..+|++||+.+.... . ++ ..+||.|||.++.+++|++.
T Consensus 47 af~~~~~gt~~e~A~L~i~~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G~el 126 (139)
T 3a43_A 47 AMEQLFAGTIAEGAEIEFVEEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKGRGV 126 (139)
T ss_dssp HHHHHHTTSTTTTCEEEEEEECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEESSCE
T ss_pred HHHHHHcCCcccCCEEEEEecCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecCCeE
Confidence 45555556655321 235688999999999998755 4 11 23999999999999999985
Q ss_pred C
Q psy1204 67 Q 67 (71)
Q Consensus 67 ~ 67 (71)
.
T Consensus 127 ~ 127 (139)
T 3a43_A 127 Y 127 (139)
T ss_dssp E
T ss_pred E
Confidence 3
No 3
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=98.54 E-value=2.9e-08 Score=61.90 Aligned_cols=43 Identities=26% Similarity=0.311 Sum_probs=36.0
Q ss_pred hcceeeEEcCCCCCceeeceEeecccCCCCCCcceeeecCCCCC
Q psy1204 24 KNVILYVLCKDCHKESKVLYHIIGLKCEHCGSYNTCRIKKPNGQ 67 (71)
Q Consensus 24 ~~~~v~i~CndC~~~s~v~~h~~g~kCp~C~Synt~ii~g~~~~ 67 (71)
...++..+|.+||+.+++.....+ +||.|||.++++++|++..
T Consensus 68 ~~~p~~~~C~~CG~~~e~~~~~~~-~CP~Cgs~~~~i~~G~el~ 110 (119)
T 2kdx_A 68 VDEKVELECKDCSHVFKPNALDYG-VCEKCHSKNVIITQGNEMR 110 (119)
T ss_dssp EEECCEEECSSSSCEECSCCSTTC-CCSSSSSCCCEEEESSCCE
T ss_pred EeccceEEcCCCCCEEeCCCCCCC-cCccccCCCcEEecCCeEE
Confidence 356889999999999998654332 8999999999999999864
No 4
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=96.55 E-value=0.00083 Score=41.68 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=24.8
Q ss_pred hcceeeEEcCCCCCceeeceEeecccCCCCCCcceee
Q psy1204 24 KNVILYVLCKDCHKESKVLYHIIGLKCEHCGSYNTCR 60 (71)
Q Consensus 24 ~~~~v~i~CndC~~~s~v~~h~~g~kCp~C~Synt~i 60 (71)
+-......|.+||.+|. .....--+||.|+|.|+..
T Consensus 62 ~L~v~p~~C~~CG~~F~-~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 62 VLLIKPAQCRKCGFVFK-AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp EEEECCCBBTTTCCBCC-CCSSCCSSCSSSCCCCBCC
T ss_pred EEEEECcChhhCcCeec-ccCCCCCCCcCCCCCccCC
Confidence 33355778999999992 2212223999999999863
No 5
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=95.25 E-value=0.0062 Score=35.04 Aligned_cols=29 Identities=21% Similarity=0.659 Sum_probs=23.4
Q ss_pred ceeeEEcCCCCCceeeceEeecccCCCCCC
Q psy1204 26 VILYVLCKDCHKESKVLYHIIGLKCEHCGS 55 (71)
Q Consensus 26 ~~v~i~CndC~~~s~v~~h~~g~kCp~C~S 55 (71)
.++...|.+||.+++..... ...||.||+
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d-~irCp~CG~ 53 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTD-AVRCKDCGH 53 (70)
T ss_dssp CCCCEECSSSCCEECCCTTS-TTCCSSSCC
T ss_pred ceEEEECCCCCCcceeCCCC-CccCCCCCc
Confidence 57899999999998876433 248999998
No 6
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=94.98 E-value=0.022 Score=36.19 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=24.8
Q ss_pred cceeeEEcCCCCCceeeceEeecccCCCCCCcceeee
Q psy1204 25 NVILYVLCKDCHKESKVLYHIIGLKCEHCGSYNTCRI 61 (71)
Q Consensus 25 ~~~v~i~CndC~~~s~v~~h~~g~kCp~C~Synt~ii 61 (71)
.+-+.-+|.+||+.+-.+. ..||+|+|.++.-+
T Consensus 43 grL~~~rC~~CG~~~~PPr----~~Cp~C~s~~~~~v 75 (145)
T 3irb_A 43 NKIIGSKCSKCGRIFVPAR----SYCEHCFVKIENYV 75 (145)
T ss_dssp TCCEEEECTTTCCEEESCC----SEETTTTEECCEEE
T ss_pred CeEEEEEeCCCCcEEcCch----hhCcCCCCCceeee
Confidence 4567889999998665443 27999999987543
No 7
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=94.49 E-value=0.0096 Score=33.75 Aligned_cols=30 Identities=23% Similarity=0.658 Sum_probs=23.4
Q ss_pred ceeeEEcCCCCCceeeceEeecccCCCCCCc
Q psy1204 26 VILYVLCKDCHKESKVLYHIIGLKCEHCGSY 56 (71)
Q Consensus 26 ~~v~i~CndC~~~s~v~~h~~g~kCp~C~Sy 56 (71)
+++...|.+|+.++.+... -..+||.||..
T Consensus 18 ~~v~Y~C~~Cg~~~~l~~~-~~iRC~~CG~R 47 (63)
T 3h0g_L 18 ATMIYLCADCGARNTIQAK-EVIRCRECGHR 47 (63)
T ss_dssp -CCCCBCSSSCCBCCCCSS-SCCCCSSSCCC
T ss_pred CCeEEECCCCCCeeecCCC-CceECCCCCcE
Confidence 3788999999999987753 33499999863
No 8
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=94.22 E-value=0.019 Score=36.65 Aligned_cols=27 Identities=30% Similarity=0.586 Sum_probs=21.0
Q ss_pred eEEcCCCCCceeeceEeecccCCCCCCcc
Q psy1204 29 YVLCKDCHKESKVLYHIIGLKCEHCGSYN 57 (71)
Q Consensus 29 ~i~CndC~~~s~v~~h~~g~kCp~C~Syn 57 (71)
...|..||+.|+...- ...||.|||.-
T Consensus 132 ~y~C~~Cg~~~~~~~~--~~~Cp~CG~~~ 158 (165)
T 2lcq_A 132 RYVCIGCGRKFSTLPP--GGVCPDCGSKV 158 (165)
T ss_dssp CEEESSSCCEESSCCG--GGBCTTTCCBE
T ss_pred EEECCCCCCcccCCCC--CCcCCCCCCcc
Confidence 6899999999986521 22799999973
No 9
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=93.13 E-value=0.071 Score=34.01 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=23.9
Q ss_pred cceeeEEcCCCCCceeeceEeecccCCCCCCcceeee
Q psy1204 25 NVILYVLCKDCHKESKVLYHIIGLKCEHCGSYNTCRI 61 (71)
Q Consensus 25 ~~~v~i~CndC~~~s~v~~h~~g~kCp~C~Synt~ii 61 (71)
.+-..-+|.+||+.+-.+. ..||+|+|.+..-+
T Consensus 43 g~L~~~rC~~CG~~~fPPr----~~Cp~C~s~~~e~v 75 (145)
T 2gnr_A 43 NKIIGSKCSKCGRIFVPAR----SYCEHCFVKIENYV 75 (145)
T ss_dssp TCCEEEECTTTCCEEESCC----SEETTTTEECCEEE
T ss_pred CEEEEEEECCCCcEEeCCC----CCCCCCCCCccEEE
Confidence 4567889999997554333 27999999875544
No 10
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=91.53 E-value=0.069 Score=30.69 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=20.9
Q ss_pred eeEEcCCCCCceeeceEeecccCCCCCC
Q psy1204 28 LYVLCKDCHKESKVLYHIIGLKCEHCGS 55 (71)
Q Consensus 28 v~i~CndC~~~s~v~~h~~g~kCp~C~S 55 (71)
+++.|. |+.-+.+..-.-.++|| ||.
T Consensus 3 ~vv~C~-C~~~~~~~~~~kT~~C~-CG~ 28 (71)
T 1gh9_A 3 IIFRCD-CGRALYSREGAKTRKCV-CGR 28 (71)
T ss_dssp EEEEET-TSCCEEEETTCSEEEET-TTE
T ss_pred EEEECC-CCCEEEEcCCCcEEECC-CCC
Confidence 689999 99988877655566999 975
No 11
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=91.37 E-value=0.075 Score=28.62 Aligned_cols=26 Identities=27% Similarity=0.595 Sum_probs=19.0
Q ss_pred eEEcCCCCCceeece--EeecccCCCCC
Q psy1204 29 YVLCKDCHKESKVLY--HIIGLKCEHCG 54 (71)
Q Consensus 29 ~i~CndC~~~s~v~~--h~~g~kCp~C~ 54 (71)
...|..||++|...+ ..-+.+||.||
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCG 30 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCG 30 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTC
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccC
Confidence 467999999997654 34566999996
No 12
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=90.52 E-value=0.16 Score=28.27 Aligned_cols=31 Identities=26% Similarity=0.568 Sum_probs=22.8
Q ss_pred ceeeEEcCCCCCceeeceEeecccCCCCCCcceeee
Q psy1204 26 VILYVLCKDCHKESKVLYHIIGLKCEHCGSYNTCRI 61 (71)
Q Consensus 26 ~~v~i~CndC~~~s~v~~h~~g~kCp~C~Synt~ii 61 (71)
.+..+.|..||. ....| +.|+.||-|+-+.+
T Consensus 27 ~p~l~~c~~cGe--~~~~H---~vc~~CG~Y~gr~V 57 (60)
T 3v2d_5 27 PPTLVPCPECKA--MKPPH---TVCPECGYYAGRKV 57 (60)
T ss_dssp CCCCEECTTTCC--EECTT---SCCTTTCEETTEEC
T ss_pred CCceeECCCCCC--eecce---EEcCCCCcCCCEEe
Confidence 366899999996 22223 36999999988755
No 13
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=89.37 E-value=0.37 Score=27.17 Aligned_cols=41 Identities=27% Similarity=0.455 Sum_probs=28.5
Q ss_pred hcceeeEEcCCCCCceeeceEee-cccCCCCCCcceeeecCC
Q psy1204 24 KNVILYVLCKDCHKESKVLYHII-GLKCEHCGSYNTCRIKKP 64 (71)
Q Consensus 24 ~~~~v~i~CndC~~~s~v~~h~~-g~kCp~C~Synt~ii~g~ 64 (71)
+...+.+.|.+|+....+..|-- -..|..|+..=.+=.+|+
T Consensus 10 nS~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PTGGK 51 (63)
T 3j20_W 10 RSRFLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGK 51 (63)
T ss_dssp SCCEEEEECSSSCCEEEEESSCSSCEECSSSCCEEEECCSSS
T ss_pred CCcEEEEECCCCCCeeEEEecCCeEEEccCcCCEEecCCCCc
Confidence 44578999999999998865421 127888887655544444
No 14
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=88.98 E-value=0.25 Score=27.35 Aligned_cols=31 Identities=23% Similarity=0.613 Sum_probs=23.0
Q ss_pred ceeeEEcCCCCCceeeceEeecccCCCCCCcceeee
Q psy1204 26 VILYVLCKDCHKESKVLYHIIGLKCEHCGSYNTCRI 61 (71)
Q Consensus 26 ~~v~i~CndC~~~s~v~~h~~g~kCp~C~Synt~ii 61 (71)
.+..+.|..||.. +.--+.||.||-|+-+.+
T Consensus 27 ~p~l~~c~~cG~~-----~~pH~vc~~CG~Y~gr~v 57 (60)
T 2zjr_Z 27 APNLTECPQCHGK-----KLSHHICPNCGYYDGRQV 57 (60)
T ss_dssp CCCCEECTTTCCE-----ECTTBCCTTTCBSSSBCS
T ss_pred CCCceECCCCCCE-----eCCceEcCCCCcCCCEEe
Confidence 4678899999974 222237999999987655
No 15
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=88.73 E-value=0.43 Score=27.18 Aligned_cols=40 Identities=25% Similarity=0.411 Sum_probs=27.1
Q ss_pred cceeeEEcCCCCCceeeceEee-cccCCCCCCcceeeecCC
Q psy1204 25 NVILYVLCKDCHKESKVLYHII-GLKCEHCGSYNTCRIKKP 64 (71)
Q Consensus 25 ~~~v~i~CndC~~~s~v~~h~~-g~kCp~C~Synt~ii~g~ 64 (71)
...+.++|++|++...+..|-- -..|..|+..=.+=.+|+
T Consensus 3 S~Fm~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~PTGGK 43 (66)
T 1qxf_A 3 SRFVKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTGGK 43 (66)
T ss_dssp CCEEEEECTTTCCEEEEESSCSSCEECSSSCCEEEECCSSS
T ss_pred ceeEEEECCCCCCceEEEecCceEEEcccCCCEEeecCCcc
Confidence 3468999999999998865421 127888876554444443
No 16
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=87.62 E-value=0.3 Score=26.05 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=19.2
Q ss_pred eeEEcCCCCCceeeceEeecccCCCCCC
Q psy1204 28 LYVLCKDCHKESKVLYHIIGLKCEHCGS 55 (71)
Q Consensus 28 v~i~CndC~~~s~v~~h~~g~kCp~C~S 55 (71)
..-+|..||.......|.-.+.|+.||-
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG~ 45 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCGY 45 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSCC
T ss_pred ecccCCCCCCceEEecCCCeEECCCCCC
Confidence 4578999987544444555668998873
No 17
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=86.93 E-value=0.21 Score=38.36 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=4.5
Q ss_pred eeeEEcCCCCCceeeceEeecccCCCCCCcc
Q psy1204 27 ILYVLCKDCHKESKVLYHIIGLKCEHCGSYN 57 (71)
Q Consensus 27 ~v~i~CndC~~~s~v~~h~~g~kCp~C~Syn 57 (71)
+..-.|++||......-..-+.+||.|||.+
T Consensus 538 ~~~~~C~~CGy~~~~~~~~~~~~CP~Cg~~~ 568 (605)
T 1h7b_A 538 MPVDKCFTCGSTHEMTPTENGFVCSICGETD 568 (605)
T ss_dssp CCEEET-------------------------
T ss_pred CCCccCcccCCcCccCccccCCcCCCCCCCc
Confidence 5577899999866432110123899999977
No 18
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=86.47 E-value=0.32 Score=24.23 Aligned_cols=14 Identities=43% Similarity=0.762 Sum_probs=12.9
Q ss_pred cCCCCCCcceeeec
Q psy1204 49 KCEHCGSYNTCRIK 62 (71)
Q Consensus 49 kCp~C~Synt~ii~ 62 (71)
.|+.|+|.+|.++.
T Consensus 2 lC~~C~~peT~l~~ 15 (36)
T 1k81_A 2 ICRECGKPDTKIIK 15 (36)
T ss_dssp CCSSSCSCEEEEEE
T ss_pred CCcCCCCCCcEEEE
Confidence 69999999999986
No 19
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=86.43 E-value=0.77 Score=27.11 Aligned_cols=41 Identities=22% Similarity=0.446 Sum_probs=29.0
Q ss_pred hcceeeEEcCCCCCceeeceEee-cccCCCCCCcceeeecCC
Q psy1204 24 KNVILYVLCKDCHKESKVLYHII-GLKCEHCGSYNTCRIKKP 64 (71)
Q Consensus 24 ~~~~v~i~CndC~~~s~v~~h~~-g~kCp~C~Synt~ii~g~ 64 (71)
+...+.+.|.+|+...++..|-- -..|..|+..=.+=.+|.
T Consensus 29 nS~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~PTGGK 70 (82)
T 3u5c_b 29 RSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTILCTPTGGK 70 (82)
T ss_dssp CCCEEEEECTTSCSCEEEESBCSSCCCCSSSCCCCEECCSSB
T ss_pred CCcEEEEECCCCCCeeEEEecCCeEEEccccCCEEeccCCCC
Confidence 34478999999999998866532 127888887655555554
No 20
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=85.71 E-value=1 Score=26.92 Aligned_cols=41 Identities=22% Similarity=0.532 Sum_probs=28.8
Q ss_pred eeEEcCCCCCceeeceEeecccCCCCCCcceeee---cCCCCCCC
Q psy1204 28 LYVLCKDCHKESKVLYHIIGLKCEHCGSYNTCRI---KKPNGQES 69 (71)
Q Consensus 28 v~i~CndC~~~s~v~~h~~g~kCp~C~Synt~ii---~g~~~~~~ 69 (71)
-...|. |++....-..+-...|++||+.+=+.. .++.||.-
T Consensus 47 RFFkC~-C~~Rt~sl~r~P~~~C~~Cg~~~wer~~M~~ek~g~~~ 90 (92)
T 2kwq_A 47 RFFKCP-CGNRTISLDRLPKKHCSTCGLFKWERVGMLKEKTGPKL 90 (92)
T ss_dssp EEEECT-TSCEEEESSSSCCSCCTTTCSCCCEEECCCSSSCCSCC
T ss_pred EEEECC-CCCceeEeeeCCCCCCCCCCCCceEEeeccccCcCCCC
Confidence 356796 998886655566668999999886555 36666643
No 21
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=85.58 E-value=1.5 Score=29.45 Aligned_cols=29 Identities=17% Similarity=0.372 Sum_probs=22.1
Q ss_pred eeeEEcCCCCCceeeceEee--cccCCCCCC
Q psy1204 27 ILYVLCKDCHKESKVLYHII--GLKCEHCGS 55 (71)
Q Consensus 27 ~v~i~CndC~~~s~v~~h~~--g~kCp~C~S 55 (71)
-....|..|+..|.+..|.. ..+||.|..
T Consensus 132 L~l~~C~~Cgg~fv~~~~~~~~~f~Cp~C~~ 162 (192)
T 2avu_E 132 LQLSSCNCCGGNFITHAHQPVGSFACSLCQP 162 (192)
T ss_dssp EEEEECTTTCCEEEEESSCCSSCCCCTTC--
T ss_pred eeeCcCCCCCCCeeCccCCCCCCCcCCCCCC
Confidence 56789999999998876654 559999973
No 22
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=85.29 E-value=0.91 Score=26.74 Aligned_cols=41 Identities=15% Similarity=0.352 Sum_probs=28.2
Q ss_pred hcceeeEEcCCCCCceeeceEee-cccCCCCCCcceeeecCC
Q psy1204 24 KNVILYVLCKDCHKESKVLYHII-GLKCEHCGSYNTCRIKKP 64 (71)
Q Consensus 24 ~~~~v~i~CndC~~~s~v~~h~~-g~kCp~C~Synt~ii~g~ 64 (71)
+...+.+.|.+|+...++..|-- -..|..|+..=.+=.+|.
T Consensus 27 nS~Fm~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~PTGGK 68 (81)
T 2xzm_6 27 NSYFMDVKCAQCQNIQMIFSNAQSTIICEKCSAILCKPTGGK 68 (81)
T ss_dssp SCCEEEEECSSSCCEEEEETTCSSCEECSSSCCEEEEECSSC
T ss_pred CCcEEEeECCCCCCeeEEEecCccEEEccCCCCEEeecCCCC
Confidence 44578999999999998865421 127888877654444443
No 23
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=84.09 E-value=1.1 Score=26.61 Aligned_cols=41 Identities=17% Similarity=0.336 Sum_probs=27.4
Q ss_pred hcceeeEEcCCCCCceeeceEee-cccCCCCCCcceeeecCC
Q psy1204 24 KNVILYVLCKDCHKESKVLYHII-GLKCEHCGSYNTCRIKKP 64 (71)
Q Consensus 24 ~~~~v~i~CndC~~~s~v~~h~~-g~kCp~C~Synt~ii~g~ 64 (71)
+...+.+.|++|+....+..|-- -..|..|+..=.+=.+|.
T Consensus 31 nS~Fm~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~PTGGK 72 (86)
T 3iz6_X 31 NSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGK 72 (86)
T ss_dssp --CEEEEECTTTCCEEEEETTCSSCCCCSSSCCCCSCCCSSS
T ss_pred CCcEeEEECCCCCCeeEEEecCCcEEEccCCCCEeecCCCCC
Confidence 34578999999999998765421 127888877655555554
No 24
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=83.77 E-value=0.82 Score=29.88 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=21.3
Q ss_pred eeeEEcCCCCCceeeceEeecccCCCCCCcce
Q psy1204 27 ILYVLCKDCHKESKVLYHIIGLKCEHCGSYNT 58 (71)
Q Consensus 27 ~v~i~CndC~~~s~v~~h~~g~kCp~C~Synt 58 (71)
+....|..||......... -+||.|++...
T Consensus 153 ~~~~~C~~CG~~~~g~~~p--~~CP~C~~~k~ 182 (191)
T 1lko_A 153 ATKWRCRNCGYVHEGTGAP--ELCPACAHPKA 182 (191)
T ss_dssp EEEEEETTTCCEEEEEECC--SBCTTTCCBGG
T ss_pred CceEEECCCCCEeeCCCCC--CCCCCCcCCHH
Confidence 4578899999886533222 29999998643
No 25
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=82.68 E-value=1.1 Score=28.92 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=18.8
Q ss_pred eeeEEcCCCCCceeeceEeecccCCCCCCcc
Q psy1204 27 ILYVLCKDCHKESKVLYHIIGLKCEHCGSYN 57 (71)
Q Consensus 27 ~v~i~CndC~~~s~v~~h~~g~kCp~C~Syn 57 (71)
...-.|..||..... .-. -+||.||...
T Consensus 136 ~~~~~C~~CG~i~~~-~~p--~~CP~Cg~~~ 163 (170)
T 3pwf_A 136 KKVYICPICGYTAVD-EAP--EYCPVCGAPK 163 (170)
T ss_dssp SCEEECTTTCCEEES-CCC--SBCTTTCCBG
T ss_pred CCeeEeCCCCCeeCC-CCC--CCCCCCCCCH
Confidence 345569999987652 111 2999998643
No 26
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=78.41 E-value=1.5 Score=23.56 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=24.2
Q ss_pred cceeeEEcCCCCCceeeceEeecccCCCCCCcceeeecC
Q psy1204 25 NVILYVLCKDCHKESKVLYHIIGLKCEHCGSYNTCRIKK 63 (71)
Q Consensus 25 ~~~v~i~CndC~~~s~v~~h~~g~kCp~C~Synt~ii~g 63 (71)
.....-.|..|+.. +..... +|..||+-|.+.-..
T Consensus 10 r~~~k~iCpkC~a~--~~~gaw--~CrKCG~~~lr~k~k 44 (51)
T 3j21_g 10 RIFKKYVCLRCGAT--NPWGAK--KCRKCGYKRLRPKAK 44 (51)
T ss_dssp HSSSEEECTTTCCE--ECTTCS--SCSSSSSCCCEEECC
T ss_pred HHhCCccCCCCCCc--CCCCce--ecCCCCCcccccccc
Confidence 34456779999986 333233 999999987765543
No 27
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=77.13 E-value=0.85 Score=26.02 Aligned_cols=32 Identities=22% Similarity=0.514 Sum_probs=18.4
Q ss_pred HhhhcceeeEEcCCCCCceeeceEeecccCCCCC
Q psy1204 21 EEYKNVILYVLCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 21 ~~y~~~~v~i~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
+.|..-.....|..|+++|.+... -|.|..||
T Consensus 11 ~~W~~d~~~~~C~~C~~~Fs~~~R--rHHCR~CG 42 (82)
T 2yw8_A 11 HAWLKDDEATHCRQCEKEFSISRR--KHHCRNCG 42 (82)
T ss_dssp ----CCCCCCBCTTTCCBCBTTBC--CEECTTTC
T ss_pred CccccCccCCcccCcCCcccCccc--cccCCCCC
Confidence 344443455689999999985432 13677665
No 28
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=76.42 E-value=0.98 Score=24.40 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=19.6
Q ss_pred eeEEcCCCCCceeeceEeecccCCCCCC
Q psy1204 28 LYVLCKDCHKESKVLYHIIGLKCEHCGS 55 (71)
Q Consensus 28 v~i~CndC~~~s~v~~h~~g~kCp~C~S 55 (71)
..-+|..||..--...|+..+.|+.|+-
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCgy 44 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGY 44 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCC
T ss_pred ccccCcCCCCceeEeccCCEEECCCCCC
Confidence 3578999997444445655669999954
No 29
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=76.18 E-value=1.6 Score=30.93 Aligned_cols=24 Identities=33% Similarity=0.894 Sum_probs=15.6
Q ss_pred eEEcCCCCCceeeceEeecccCCCCCCc
Q psy1204 29 YVLCKDCHKESKVLYHIIGLKCEHCGSY 56 (71)
Q Consensus 29 ~i~CndC~~~s~v~~h~~g~kCp~C~Sy 56 (71)
...|.-|+. ..|+...+||+||+-
T Consensus 208 ~l~Cs~C~t----~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 208 YLSCSLCAC----EWHYVRIKCSHCEES 231 (309)
T ss_dssp EEEETTTCC----EEECCTTSCSSSCCC
T ss_pred EEEeCCCCC----EEeecCcCCcCCCCC
Confidence 456666663 334555688999875
No 30
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=75.97 E-value=1.6 Score=29.28 Aligned_cols=33 Identities=30% Similarity=0.677 Sum_probs=23.3
Q ss_pred hhcc-eeeEEcCCCCCceeec---------eEeecccCCCCCC
Q psy1204 23 YKNV-ILYVLCKDCHKESKVL---------YHIIGLKCEHCGS 55 (71)
Q Consensus 23 y~~~-~v~i~CndC~~~s~v~---------~h~~g~kCp~C~S 55 (71)
|++- +..+.|..|+.++.-+ ...-|+.||+|+.
T Consensus 15 fr~c~~l~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~ 57 (206)
T 3flo_B 15 FKDTVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQ 57 (206)
T ss_dssp TTTCCCEEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCC
T ss_pred hCcCceeEEECCCCCCccCCCCcccCCCcccccccccCCCCCC
Confidence 6544 7899999999776532 2334568999976
No 31
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=75.14 E-value=1.2 Score=26.09 Aligned_cols=31 Identities=13% Similarity=0.166 Sum_probs=19.8
Q ss_pred ceeeEEcCCCCCceeeceEeecccCCCCCCc
Q psy1204 26 VILYVLCKDCHKESKVLYHIIGLKCEHCGSY 56 (71)
Q Consensus 26 ~~v~i~CndC~~~s~v~~h~~g~kCp~C~Sy 56 (71)
+.....|..||+...-.--.-..+|++|+.-
T Consensus 24 q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 24 MNEDHACPNCGEDRVDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp HHSCEECSSSCCEEEEEEETTEEEETTTCCE
T ss_pred ccccCcCCCCCCcceeccCCCeEECCCCCCE
Confidence 3467899999985542221112399999763
No 32
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=74.33 E-value=2.6 Score=28.79 Aligned_cols=31 Identities=19% Similarity=0.439 Sum_probs=21.5
Q ss_pred eeeEEcCCCCCceeeceEe----ecccCCCCCCcc
Q psy1204 27 ILYVLCKDCHKESKVLYHI----IGLKCEHCGSYN 57 (71)
Q Consensus 27 ~v~i~CndC~~~s~v~~h~----~g~kCp~C~Syn 57 (71)
.....|..|+....+.... .-.+||.|++.+
T Consensus 132 ~~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~~ 166 (279)
T 1ltl_A 132 KAVFECRGCMRHHAVTQSTNMITEPSLCSECGGRS 166 (279)
T ss_dssp EEEEEETTTCCEEEEECSSSSCCCCSCCTTTCCCC
T ss_pred EEEEEcCCCCCEEEEEecCCcccCCCcCCCCCCCC
Confidence 4678999999876554321 113799999875
No 33
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=73.94 E-value=2.2 Score=21.94 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=19.9
Q ss_pred eEEcCCCCCceeece-----E----eecccCCCCCCcceee
Q psy1204 29 YVLCKDCHKESKVLY-----H----IIGLKCEHCGSYNTCR 60 (71)
Q Consensus 29 ~i~CndC~~~s~v~~-----h----~~g~kCp~C~Synt~i 60 (71)
...|..|++.|.... | .+ +|+.|+---+..
T Consensus 14 ~~~C~~C~k~F~~~~~l~~~H~~~k~~--~C~~C~k~f~~~ 52 (62)
T 1vd4_A 14 SFKCPVCSSTFTDLEANQLFDPMTGTF--RCTFCHTEVEED 52 (62)
T ss_dssp EEECSSSCCEEEHHHHHHHEETTTTEE--BCSSSCCBCEEC
T ss_pred CccCCCCCchhccHHHhHhhcCCCCCE--ECCCCCCccccC
Confidence 467999999885321 1 24 899998654443
No 34
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=73.21 E-value=1.8 Score=25.44 Aligned_cols=24 Identities=29% Similarity=0.674 Sum_probs=17.7
Q ss_pred eEEcCCCCCceeeceEeecccCCCCCCcce
Q psy1204 29 YVLCKDCHKESKVLYHIIGLKCEHCGSYNT 58 (71)
Q Consensus 29 ~i~CndC~~~s~v~~h~~g~kCp~C~Synt 58 (71)
.--|..|+..-+.. .||.|+|..+
T Consensus 23 ~rAC~~C~~v~~~d------~CPnCgs~~~ 46 (81)
T 3p8b_A 23 EKACRHCHYITSED------RCPVCGSRDL 46 (81)
T ss_dssp CEEETTTCBEESSS------SCTTTCCCCE
T ss_pred HHHHhhCCCccCCC------CCCCCCCCcc
Confidence 45699998764322 7999999874
No 35
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=71.08 E-value=2.4 Score=24.16 Aligned_cols=26 Identities=27% Similarity=0.575 Sum_probs=18.2
Q ss_pred eeEEcCCCCCceeeceEeecccCCCCCCccee
Q psy1204 28 LYVLCKDCHKESKVLYHIIGLKCEHCGSYNTC 59 (71)
Q Consensus 28 v~i~CndC~~~s~v~~h~~g~kCp~C~Synt~ 59 (71)
...-|.+|.. .+ ....||.|+|..|.
T Consensus 10 ~~~AC~~C~~--~~----~~~~CPnC~s~~tS 35 (69)
T 1ryq_A 10 SEKACRHCHY--IT----SEDRCPVCGSRDLS 35 (69)
T ss_dssp -CEEETTTCB--EE----SSSSCTTTCCCCEE
T ss_pred hhhhHHhCCc--cc----cCCcCCCccCCccC
Confidence 3567999986 22 44489999988743
No 36
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=70.95 E-value=1.3 Score=28.53 Aligned_cols=15 Identities=47% Similarity=0.724 Sum_probs=13.8
Q ss_pred ccCCCCCCcceeeec
Q psy1204 48 LKCEHCGSYNTCRIK 62 (71)
Q Consensus 48 ~kCp~C~Synt~ii~ 62 (71)
..|+.|+|.+|.++.
T Consensus 105 VlC~~C~sPdT~L~k 119 (148)
T 2d74_B 105 VICPVCGSPDTKIIK 119 (148)
T ss_dssp SSCSSSCCTTCCCCB
T ss_pred EECCCCCCcCcEEEE
Confidence 589999999999996
No 37
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=70.75 E-value=1.3 Score=28.11 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=14.2
Q ss_pred cccCCCCCCcceeeec
Q psy1204 47 GLKCEHCGSYNTCRIK 62 (71)
Q Consensus 47 g~kCp~C~Synt~ii~ 62 (71)
+..|+.|+|.+|.++.
T Consensus 103 yVlC~~C~sPdT~l~k 118 (139)
T 3cw2_K 103 YVECSTCKSLDTILKK 118 (139)
T ss_dssp CSSCCSSSSSCCCSCS
T ss_pred eeECCCCCCcCcEEEE
Confidence 3589999999999986
No 38
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=69.90 E-value=9.5 Score=25.06 Aligned_cols=43 Identities=19% Similarity=0.131 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCCCHhhhcceeeEEcCCCCCceeeceEeecccCCCCCCcc
Q psy1204 8 RQMDEEIASTPMPEEYKNVILYVLCKDCHKESKVLYHIIGLKCEHCGSYN 57 (71)
Q Consensus 8 ~~lD~~i~~~pmP~~y~~~~v~i~CndC~~~s~v~~h~~g~kCp~C~Syn 57 (71)
+.+...+.....- +......|..||..... ..-.+||.|+...
T Consensus 154 ~~~~~ll~~l~~~----~~~~~~~C~~CG~i~~g---~~p~~CP~C~~~k 196 (202)
T 1yuz_A 154 ERYLAAYNDIDAP----DDDKFHLCPICGYIHKG---EDFEKCPICFRPK 196 (202)
T ss_dssp HHHHHHHHTTTCC----CSCCEEECSSSCCEEES---SCCSBCTTTCCBG
T ss_pred HHHHHHHHHHhcC----CCCcEEEECCCCCEEcC---cCCCCCCCCCCCh
Confidence 3444445444433 22457889999987653 1113999998753
No 39
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=69.61 E-value=3.2 Score=25.02 Aligned_cols=26 Identities=27% Similarity=0.678 Sum_probs=21.6
Q ss_pred ceeeEEcCCCCCceeeceEeecccCCCCC
Q psy1204 26 VILYVLCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 26 ~~v~i~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
.+..++|.-||. ..||.--..|..||
T Consensus 13 ~KtHtlCrRCG~---~syH~qK~~Ca~CG 38 (94)
T 3iz5_l 13 NKTHTLCVRCGR---RSFHLQKSTCSSCG 38 (94)
T ss_dssp CCSEEECTTTCS---EEEEGGGTEETTTC
T ss_pred CCccceecCcCc---hhhhcccccccccC
Confidence 467999999997 55777777899998
No 40
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=68.85 E-value=3.1 Score=25.06 Aligned_cols=26 Identities=38% Similarity=0.860 Sum_probs=21.6
Q ss_pred ceeeEEcCCCCCceeeceEeecccCCCCC
Q psy1204 26 VILYVLCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 26 ~~v~i~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
.+..++|.-||. ..||.--..|..||
T Consensus 13 ~KtHtlCrRCG~---~syH~qK~~Ca~CG 38 (94)
T 4a18_A 13 QKTHTLCRRCGK---ATYHKQKLRCAACG 38 (94)
T ss_dssp CCCEEECTTTCS---EEEETTTTEESSSC
T ss_pred CCccceecCcCc---hhhhhccccccccC
Confidence 467999999997 55777777899998
No 41
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.57 E-value=2.1 Score=27.78 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=14.2
Q ss_pred cccCCCCCCcceeeec
Q psy1204 47 GLKCEHCGSYNTCRIK 62 (71)
Q Consensus 47 g~kCp~C~Synt~ii~ 62 (71)
+..|+.|+|.+|.++.
T Consensus 103 YVlC~~C~sPdT~L~~ 118 (157)
T 2e9h_A 103 FVLCPECENPETDLHV 118 (157)
T ss_dssp TTSCTTTCCSCCEEEE
T ss_pred eEECCCCCCCccEEEE
Confidence 4589999999999995
No 42
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=67.86 E-value=3.1 Score=22.86 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=15.6
Q ss_pred EcCCCCCceeeceEeecccCCCCCCcceee
Q psy1204 31 LCKDCHKESKVLYHIIGLKCEHCGSYNTCR 60 (71)
Q Consensus 31 ~CndC~~~s~v~~h~~g~kCp~C~Synt~i 60 (71)
-|..|+..-+.. .||.|+|-.|.-
T Consensus 3 AC~~C~~v~~~~------~CpnC~~~tt~~ 26 (59)
T 3lpe_B 3 ACLKCKYLTNDE------ICPICHSPTSEN 26 (59)
T ss_dssp EETTTCBEESSS------BCTTTCCBEESC
T ss_pred ccccCCcccCCC------CCCCCCCCccCC
Confidence 478887653332 699999865443
No 43
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=67.60 E-value=3.3 Score=22.83 Aligned_cols=27 Identities=30% Similarity=0.677 Sum_probs=21.7
Q ss_pred cceeeEEcCCCCCceeeceEeecccCCCCC
Q psy1204 25 NVILYVLCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 25 ~~~v~i~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
..+..++|.-||. ..||.--..|..||
T Consensus 13 ~~ktH~~CrRCG~---~syH~qK~~Ca~CG 39 (57)
T 1vq8_1 13 NTTTHTKCRRCGE---KSYHTKKKVCSSCG 39 (57)
T ss_dssp CCCCEEECTTTCS---EEEETTTTEETTTC
T ss_pred CCCccccccccCC---hhhhcccccccccc
Confidence 3478999999997 46777777899997
No 44
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=65.75 E-value=1.3 Score=28.09 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=14.0
Q ss_pred cccCCCCCCcceeeec
Q psy1204 47 GLKCEHCGSYNTCRIK 62 (71)
Q Consensus 47 g~kCp~C~Synt~ii~ 62 (71)
+..|+.|+|.+|.++.
T Consensus 102 yVlC~~C~sPdT~l~k 117 (138)
T 1nee_A 102 FVICHECNRPDTRIIR 117 (138)
T ss_dssp HHHHTCCSSCSSCCEE
T ss_pred EEECCCCCCcCcEEEE
Confidence 3589999999999986
No 45
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=65.50 E-value=2.9 Score=22.10 Aligned_cols=27 Identities=22% Similarity=0.621 Sum_probs=19.2
Q ss_pred eeeEEcCCCCCceeeceEeecccCCCCCCcce
Q psy1204 27 ILYVLCKDCHKESKVLYHIIGLKCEHCGSYNT 58 (71)
Q Consensus 27 ~v~i~CndC~~~s~v~~h~~g~kCp~C~Synt 58 (71)
.+.+.|+.|++. + ...+ +|..|..|+.
T Consensus 4 ~~~~~Cd~C~~~--i-g~R~--~C~~C~dyDL 30 (52)
T 1tot_A 4 RFVYTCNECKHH--V-ETRW--HCTVCEDYDL 30 (52)
T ss_dssp SSCEEETTTTEE--E-SSEE--EESSSSSCEE
T ss_pred cCEEECCCCCCC--C-cceE--EcCCCCCchh
Confidence 356889999986 3 2344 8888877764
No 46
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=65.13 E-value=6.9 Score=25.35 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=28.3
Q ss_pred HhhhcceeeEEcCCCCCcee----------------eceEeecccCCCCCCccee-eecCC
Q psy1204 21 EEYKNVILYVLCKDCHKESK----------------VLYHIIGLKCEHCGSYNTC-RIKKP 64 (71)
Q Consensus 21 ~~y~~~~v~i~CndC~~~s~----------------v~~h~~g~kCp~C~Synt~-ii~g~ 64 (71)
++| .+...+.|..|+..+. ..-+++ .||..|+..++. |+.+.
T Consensus 30 ~~~-~~~fkvkC~~C~E~~~kv~v~~~e~~ei~gsRG~aNfv-~KCk~C~re~Si~i~~~~ 88 (164)
T 1zso_A 30 DEY-LWIFNIRDSTSSLTRDNIQFRKTDILEIPNSRGTANFM-IKWTEYPKYSTINFVNTK 88 (164)
T ss_dssp TTC-CEEEEEEETTSSCEEEEEEECTTCBEECTTSSCEESEE-ECCSSSSCCEEEEEECCT
T ss_pred CCc-EEEEEEEECCCCcccCCEEEcchheeecCCCCcceeEE-EeccccCCcceEEEEeCC
Confidence 344 4688999999987643 111333 499999998887 44443
No 47
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=64.96 E-value=5.3 Score=23.13 Aligned_cols=33 Identities=21% Similarity=0.608 Sum_probs=22.3
Q ss_pred eeeEEcCCCCCceeeceEeecccCCCCCCcceeeec
Q psy1204 27 ILYVLCKDCHKESKVLYHIIGLKCEHCGSYNTCRIK 62 (71)
Q Consensus 27 ~v~i~CndC~~~s~v~~h~~g~kCp~C~Synt~ii~ 62 (71)
.-+.+|..|-+....-... -||+||.-..+-++
T Consensus 13 ~~iLrC~aCf~~t~~~~k~---FCp~CGn~TL~Rvs 45 (79)
T 2con_A 13 SYILRCHGCFKTTSDMNRV---FCGHCGNKTLKKVS 45 (79)
T ss_dssp CEEEECSSSCCEESCSSCC---SCSSSCCSCCEEEE
T ss_pred eeeeEecccceECCCcccc---cccccCcccceEEE
Confidence 4578999998766443322 59999986555543
No 48
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=64.90 E-value=2.4 Score=27.89 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=14.1
Q ss_pred cccCCCCCCcceeeec
Q psy1204 47 GLKCEHCGSYNTCRIK 62 (71)
Q Consensus 47 g~kCp~C~Synt~ii~ 62 (71)
+..|+.|+|.+|.++.
T Consensus 96 YVlC~~C~sPdT~L~k 111 (170)
T 2g2k_A 96 FVLCPECENPETDLHV 111 (170)
T ss_dssp HHSCTTTSSSCEEEEE
T ss_pred eEECCCCCCCccEEEE
Confidence 3589999999999987
No 49
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=63.94 E-value=3.3 Score=21.62 Aligned_cols=30 Identities=20% Similarity=0.432 Sum_probs=18.0
Q ss_pred eeEEcCCCCCceee------ceEeec--ccCCCCCCcc
Q psy1204 28 LYVLCKDCHKESKV------LYHIIG--LKCEHCGSYN 57 (71)
Q Consensus 28 v~i~CndC~~~s~v------~~h~~g--~kCp~C~Syn 57 (71)
....|..||..... +|-.+- -+||.||.-.
T Consensus 3 ~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~k 40 (46)
T 6rxn_A 3 QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSK 40 (46)
T ss_dssp CCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCBG
T ss_pred CEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCcH
Confidence 35689999976641 111111 1899998753
No 50
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=63.41 E-value=3.8 Score=31.41 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=19.6
Q ss_pred eeEEcCCCCCceeeceEeecccCCCCCCcceeeecC
Q psy1204 28 LYVLCKDCHKESKVLYHIIGLKCEHCGSYNTCRIKK 63 (71)
Q Consensus 28 v~i~CndC~~~s~v~~h~~g~kCp~C~Synt~ii~g 63 (71)
....| .|++......-.+| +||.|+.-...+..+
T Consensus 555 ~~~~c-~cg~~~~~k~g~~G-~CP~Cg~g~l~~r~~ 588 (633)
T 2gai_A 555 TNQKC-SCGKEMRLSFGKYG-FYLKCECGKTRSVKN 588 (633)
T ss_dssp EEEEC-TTSCEEEEEEETTE-EEEECSSSCCEECCT
T ss_pred ccchh-hcCceeeecccccc-cCcccCCCcceeecc
Confidence 34578 89875444333455 799998433333333
No 51
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=63.35 E-value=0.89 Score=26.48 Aligned_cols=24 Identities=21% Similarity=0.523 Sum_probs=15.8
Q ss_pred eEEcCCCCCceeeceEeecccCCCCC
Q psy1204 29 YVLCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 29 ~i~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
.-.|..|++.|.+...- |.|..||
T Consensus 20 ~~~C~~C~~~F~~~~Rr--hhCr~CG 43 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRR--HHCRACG 43 (90)
T ss_dssp CCBCTTTCCBCCSSSCC--EECTTTC
T ss_pred CCcCcCCCCcccchhhC--ccccCCC
Confidence 45799999999754322 2666664
No 52
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=62.79 E-value=4.2 Score=22.30 Aligned_cols=31 Identities=29% Similarity=0.502 Sum_probs=22.4
Q ss_pred eeEEcCCCCCceeeceEeecccCCCCCCcceeeec
Q psy1204 28 LYVLCKDCHKESKVLYHIIGLKCEHCGSYNTCRIK 62 (71)
Q Consensus 28 v~i~CndC~~~s~v~~h~~g~kCp~C~Synt~ii~ 62 (71)
-...|..|+....+.- .+|..|||-|.+.=.
T Consensus 18 ~k~ICrkC~ARnp~~A----~~CRKCg~~~LRpKk 48 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRA----TKCRRCHSTNLRLKK 48 (56)
T ss_dssp CCEEETTTCCEECTTC----SSCTTTCCCCEEECC
T ss_pred chhhhccccCcCCccc----ccccCCCCCCCCccc
Confidence 4667999987655543 499999988776543
No 53
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=61.88 E-value=4.7 Score=21.24 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=7.9
Q ss_pred EEcCCCCCcee
Q psy1204 30 VLCKDCHKESK 40 (71)
Q Consensus 30 i~CndC~~~s~ 40 (71)
..|..|++.|.
T Consensus 5 y~C~~C~k~F~ 15 (60)
T 4gzn_C 5 FFCNFCGKTYR 15 (60)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCCEeC
Confidence 46777877775
No 54
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=61.86 E-value=5.8 Score=21.89 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=16.3
Q ss_pred eeEEcCCCCCceeeceEeecccCCCCCCcc
Q psy1204 28 LYVLCKDCHKESKVLYHIIGLKCEHCGSYN 57 (71)
Q Consensus 28 v~i~CndC~~~s~v~~h~~g~kCp~C~Syn 57 (71)
....|..|+.-+- -..||.||+.-
T Consensus 5 ~mr~C~~CgvYTL------k~~CP~CG~~T 28 (60)
T 2apo_B 5 RMKKCPKCGLYTL------KEICPKCGEKT 28 (60)
T ss_dssp CCEECTTTCCEES------SSBCSSSCSBC
T ss_pred hceeCCCCCCEec------cccCcCCCCcC
Confidence 4568999974322 34799998764
No 55
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=60.27 E-value=11 Score=22.27 Aligned_cols=30 Identities=20% Similarity=0.485 Sum_probs=20.7
Q ss_pred eeEEcCCCCCceeec-------eEeecccCCCCCCcceeee
Q psy1204 28 LYVLCKDCHKESKVL-------YHIIGLKCEHCGSYNTCRI 61 (71)
Q Consensus 28 v~i~CndC~~~s~v~-------~h~~g~kCp~C~Synt~ii 61 (71)
-..-|. ||..|.+. ...+ .|+.| |--++|+
T Consensus 22 y~ypCr-CGd~F~IteedLe~ge~iv--~C~sC-SL~IkV~ 58 (89)
T 2jr7_A 22 YFYPCP-CGDNFSITKEDLENGEDVA--TCPSC-SLIIKVI 58 (89)
T ss_dssp EEEECT-TSSEEEEEHHHHHHTCCEE--ECTTT-CCEEEEE
T ss_pred EEEcCC-CCCEEEECHHHHhCCCEEE--ECCCC-ccEEEEE
Confidence 456698 99998764 2344 89999 5556665
No 56
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=60.19 E-value=4.5 Score=25.99 Aligned_cols=35 Identities=31% Similarity=0.680 Sum_probs=25.7
Q ss_pred eeeEEcCCCCCceeeceEeecccCCCCCCcceeeecC
Q psy1204 27 ILYVLCKDCHKESKVLYHIIGLKCEHCGSYNTCRIKK 63 (71)
Q Consensus 27 ~v~i~CndC~~~s~v~~h~~g~kCp~C~Synt~ii~g 63 (71)
.+...|..||..=......+ +||.||....|-++-
T Consensus 138 vv~a~~~~~g~~m~~~~~~~--~cp~~g~~e~RKva~ 172 (179)
T 3m7n_A 138 VLRALCSNCKTEMVREGDIL--KCPECGRVEKRKIST 172 (179)
T ss_dssp EEECBCTTTCCBCEECSSSE--ECSSSCCEECCCBCT
T ss_pred EEEecccccCCceEECCCEE--ECCCCCCEEEEeccc
Confidence 57889999997553333344 999999988887763
No 57
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=59.70 E-value=5.2 Score=24.18 Aligned_cols=26 Identities=31% Similarity=0.786 Sum_probs=21.2
Q ss_pred ceeeEEcCCCCCceeeceEeecccCCCCC
Q psy1204 26 VILYVLCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 26 ~~v~i~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
.+..++|.-||.. .||..-..|..||
T Consensus 13 ~KtH~lCrRCG~~---sfH~qK~~CgkCG 38 (97)
T 2zkr_2 13 NKTHTLCRRCGSK---AYHLQKSTCGKCG 38 (97)
T ss_dssp CCCEECCTTTCSS---CEETTSCCBTTTC
T ss_pred CCCCCcCCCCCCc---cCcCccccCcccC
Confidence 3678999999985 4577777899998
No 58
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=59.04 E-value=3.3 Score=24.21 Aligned_cols=9 Identities=44% Similarity=1.213 Sum_probs=4.0
Q ss_pred EEcCCCCCc
Q psy1204 30 VLCKDCHKE 38 (71)
Q Consensus 30 i~CndC~~~ 38 (71)
.+|.||++.
T Consensus 32 afCPeCgq~ 40 (81)
T 2jrp_A 32 ALCPDCRQP 40 (81)
T ss_dssp EECSSSCSC
T ss_pred ccCcchhhH
Confidence 344444443
No 59
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=57.68 E-value=11 Score=27.68 Aligned_cols=42 Identities=26% Similarity=0.510 Sum_probs=28.9
Q ss_pred eeeEEcCCCCCceee-------ce----EeecccCCCCCCcceeeecCCCCCC
Q psy1204 27 ILYVLCKDCHKESKV-------LY----HIIGLKCEHCGSYNTCRIKKPNGQE 68 (71)
Q Consensus 27 ~v~i~CndC~~~s~v-------~~----h~~g~kCp~C~Synt~ii~g~~~~~ 68 (71)
.....|..|++.... +| ......|++||=-|..|..+..-+.
T Consensus 10 ~~~s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ev~~~g~~~p 62 (404)
T 2qkd_A 10 SIESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQD 62 (404)
T ss_dssp -CEEECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEEEEEEEESSCS
T ss_pred CccccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCchheeeECcccCC
Confidence 457789999976643 21 1122389999999999987766554
No 60
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=57.33 E-value=6.3 Score=21.77 Aligned_cols=24 Identities=21% Similarity=0.566 Sum_probs=14.9
Q ss_pred eeEEcCCCCCceeeceEeecccCCCCCCcc
Q psy1204 28 LYVLCKDCHKESKVLYHIIGLKCEHCGSYN 57 (71)
Q Consensus 28 v~i~CndC~~~s~v~~h~~g~kCp~C~Syn 57 (71)
..-.|..||.-+ |-..||.||+.-
T Consensus 4 ~mr~C~~Cg~YT------Lk~~CP~CG~~t 27 (60)
T 2aus_D 4 RIRKCPKCGRYT------LKETCPVCGEKT 27 (60)
T ss_dssp CCEECTTTCCEE------SSSBCTTTCSBC
T ss_pred cceECCCCCCEE------ccccCcCCCCcc
Confidence 356788886422 223689888754
No 61
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=57.18 E-value=7.3 Score=20.46 Aligned_cols=12 Identities=17% Similarity=0.692 Sum_probs=8.7
Q ss_pred eeEEcCCCCCce
Q psy1204 28 LYVLCKDCHKES 39 (71)
Q Consensus 28 v~i~CndC~~~s 39 (71)
..+.|..||..-
T Consensus 14 ~~~~Cp~Cg~~~ 25 (57)
T 1qyp_A 14 TKITCPKCGNDT 25 (57)
T ss_dssp EECCCTTTCCSE
T ss_pred eEeECCCCCCCE
Confidence 357799999743
No 62
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=56.36 E-value=8.1 Score=20.47 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=21.1
Q ss_pred eeEEcCCCCCceeeceEeecccCCCCCCccee
Q psy1204 28 LYVLCKDCHKESKVLYHIIGLKCEHCGSYNTC 59 (71)
Q Consensus 28 v~i~CndC~~~s~v~~h~~g~kCp~C~Synt~ 59 (71)
+...|.+|+-+..+.. .+|+.|+.--..
T Consensus 8 ~~~~C~~C~GsG~~i~----~~C~~C~G~G~v 35 (53)
T 3lcz_A 8 LETTCPNCNGSGREEP----EPCPKCLGKGVI 35 (53)
T ss_dssp HEEECTTTTTSCEETT----EECTTTTTSSEE
T ss_pred eeccCcCCcccccCCC----CcCCCCCCcEEE
Confidence 5678999988777654 499999876543
No 63
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=55.88 E-value=8.2 Score=27.73 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=20.8
Q ss_pred cceeeEEcCCCCCceeece-EeecccCCCCCC
Q psy1204 25 NVILYVLCKDCHKESKVLY-HIIGLKCEHCGS 55 (71)
Q Consensus 25 ~~~v~i~CndC~~~s~v~~-h~~g~kCp~C~S 55 (71)
+.-.+..|..|+....... -..+..||+||+
T Consensus 240 ~~g~v~~C~~C~~~~~~~~~~~~~~~C~~cg~ 271 (392)
T 3axs_A 240 QFGYIQYCFNCMNREVVTDLYKFKEKCPHCGS 271 (392)
T ss_dssp TEEEEEECTTTCCEEEECCGGGCCSBCTTTCS
T ss_pred hcceEEECCCCCCeEeecCCCCCCCcCCCCCC
Confidence 4467889999997543221 124568999987
No 64
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=55.81 E-value=4.4 Score=18.90 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=9.2
Q ss_pred EEcCCCCCceee
Q psy1204 30 VLCKDCHKESKV 41 (71)
Q Consensus 30 i~CndC~~~s~v 41 (71)
..|..|++.|..
T Consensus 11 ~~C~~C~k~f~~ 22 (45)
T 2epq_A 11 YSCPVCGLRFKR 22 (45)
T ss_dssp SEETTTTEECSC
T ss_pred CcCCCCCcccCC
Confidence 468899988753
No 65
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=55.66 E-value=5.5 Score=22.00 Aligned_cols=22 Identities=32% Similarity=0.765 Sum_probs=14.9
Q ss_pred EcCCCCCceeeceEeecccCCCCC
Q psy1204 31 LCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 31 ~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
.|..|+++|..... -|.|..||
T Consensus 13 ~C~~C~~~F~~~~R--rHHCR~CG 34 (73)
T 1vfy_A 13 ACMICSKKFSLLNR--KHHCRSCG 34 (73)
T ss_dssp BCTTTCCBCBTTBC--CEECTTTC
T ss_pred cccCCCCccCCccc--cccCCCCC
Confidence 79999999875432 13666665
No 66
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=55.40 E-value=14 Score=27.15 Aligned_cols=42 Identities=17% Similarity=0.367 Sum_probs=30.1
Q ss_pred eeeEEcCCCCCceeece-----------EeecccCCCCCCcceeeecCCCCCC
Q psy1204 27 ILYVLCKDCHKESKVLY-----------HIIGLKCEHCGSYNTCRIKKPNGQE 68 (71)
Q Consensus 27 ~v~i~CndC~~~s~v~~-----------h~~g~kCp~C~Synt~ii~g~~~~~ 68 (71)
.....|..|++...... ......|++||=-|..|-.|..-+.
T Consensus 218 ~~~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~neVk~~g~i~~ 270 (404)
T 2qkd_A 218 QFNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEVKSGGAVEP 270 (404)
T ss_dssp EEEECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEEEEEEECSSSCC
T ss_pred eecccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCcccceeeccccCC
Confidence 36788999998775421 1222389999999999988776654
No 67
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=55.37 E-value=1.9 Score=24.64 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=17.0
Q ss_pred eeEEcCCCCCceeeceEeecccCCCCC
Q psy1204 28 LYVLCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 28 v~i~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
....|..|+++|.+... -|.|..||
T Consensus 20 ~~~~C~~C~~~Fs~~~R--rHHCR~CG 44 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVR--RHHCRNCG 44 (84)
T ss_dssp TCCBCTTTCCBCCTTSC--CEECTTTC
T ss_pred CCCCCcCcCCccccchh--cccccCCC
Confidence 45689999999986432 13676665
No 68
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=54.79 E-value=3.7 Score=20.98 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=15.8
Q ss_pred eEEcCCCCCc-eeeceEeecccCCCCCC
Q psy1204 29 YVLCKDCHKE-SKVLYHIIGLKCEHCGS 55 (71)
Q Consensus 29 ~i~CndC~~~-s~v~~h~~g~kCp~C~S 55 (71)
.+.|..|+.. -....-.--+.|+.||.
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCC
Confidence 4569999873 22211111239999987
No 69
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=51.21 E-value=6.3 Score=24.08 Aligned_cols=24 Identities=29% Similarity=0.618 Sum_probs=16.2
Q ss_pred eEEcCCCCCceeeceEeecccCCCCC
Q psy1204 29 YVLCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 29 ~i~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
...|..|++.|.+... -|.|..||
T Consensus 69 ~~~C~~C~~~Fs~~~R--rHHCR~CG 92 (125)
T 1joc_A 69 VQNCMACGKGFSVTVR--RHHCRQCG 92 (125)
T ss_dssp CCBCTTTCCBCCSSSC--CEECTTTC
T ss_pred CCCCcCcCCccccccc--cccCCCCC
Confidence 4579999999975331 23676665
No 70
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=51.09 E-value=7 Score=15.79 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=9.3
Q ss_pred EEcCCCCCceee
Q psy1204 30 VLCKDCHKESKV 41 (71)
Q Consensus 30 i~CndC~~~s~v 41 (71)
..|..|++.|..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 568999988764
No 71
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=50.98 E-value=13 Score=19.93 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=20.6
Q ss_pred eeeEEcCCCCCceeeceEeecccCCCCCCcceeee
Q psy1204 27 ILYVLCKDCHKESKVLYHIIGLKCEHCGSYNTCRI 61 (71)
Q Consensus 27 ~v~i~CndC~~~s~v~~h~~g~kCp~C~Synt~ii 61 (71)
+..+.|..||. ....| +.|+. |-|+-+.+
T Consensus 25 p~l~~c~~cGe--~~l~H---~vc~~-G~Y~gr~V 53 (56)
T 3r8s_0 25 TSLSVDKTSGE--KHLRH---HITAD-GYYRGRKV 53 (56)
T ss_dssp CCEEECTTTCC--EEETT---BCCTT-SEETTEEC
T ss_pred CceeECCCCCC--eeccc---EECCC-CeECCEEe
Confidence 56899999996 22223 37999 99987655
No 72
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.37 E-value=6.5 Score=22.24 Aligned_cols=24 Identities=29% Similarity=0.728 Sum_probs=14.9
Q ss_pred eEEcCCCCCceeeceEeecccCCCCC
Q psy1204 29 YVLCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 29 ~i~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
...|..|+++|.+... -|.|..||
T Consensus 14 ~~~C~~C~~~F~~~~R--rHHCR~CG 37 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKK--RRSCSNCG 37 (84)
T ss_dssp CSSCSSSCCCCCSSSC--CEECSSSC
T ss_pred CCcCcCcCCccccchh--hhhhcCCC
Confidence 4579999999875321 12555554
No 73
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=50.17 E-value=9.2 Score=25.63 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=18.3
Q ss_pred eeEEcCCCCCceeeceEe---ecccCCCCCCc
Q psy1204 28 LYVLCKDCHKESKVLYHI---IGLKCEHCGSY 56 (71)
Q Consensus 28 v~i~CndC~~~s~v~~h~---~g~kCp~C~Sy 56 (71)
....|..|++........ ..-.||.||+.
T Consensus 120 ~~~~C~~C~~~~~~~~~~~~~~~p~C~~Cgg~ 151 (249)
T 1m2k_A 120 RVVRCTSCNNSFEVESAPKIPPLPKCDKCGSL 151 (249)
T ss_dssp EEEEESSSSCEEECSSCCCSSSCCBCSSSSSB
T ss_pred ceeEeCCCCCcccchhhccCCCCCCCCCCCCC
Confidence 456799999865432210 12389999874
No 74
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=49.75 E-value=8.5 Score=25.86 Aligned_cols=29 Identities=28% Similarity=0.542 Sum_probs=18.6
Q ss_pred eeeEEcCCCCCceeeceEe------ecccCCCCCC
Q psy1204 27 ILYVLCKDCHKESKVLYHI------IGLKCEHCGS 55 (71)
Q Consensus 27 ~v~i~CndC~~~s~v~~h~------~g~kCp~C~S 55 (71)
--...|..|++........ ---.||.||+
T Consensus 121 ~~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg 155 (253)
T 1ma3_A 121 MDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGS 155 (253)
T ss_dssp EEEEEETTTCCEEEGGGTHHHHHTTCCCCCTTTCC
T ss_pred cCeeeeCCCCCcCcHHHHHHHhccCCCCCCCCCCC
Confidence 4467899999875432210 0138999998
No 75
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=48.85 E-value=12 Score=18.05 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=7.3
Q ss_pred cCCCCCCcceeeec
Q psy1204 49 KCEHCGSYNTCRIK 62 (71)
Q Consensus 49 kCp~C~Synt~ii~ 62 (71)
+|+.||..=..+.+
T Consensus 8 ~C~~CGnivev~~~ 21 (36)
T 1dxg_A 8 KCELCGQVVKVLEE 21 (36)
T ss_dssp ECTTTCCEEEEEEC
T ss_pred EcCCCCcEEEEEeC
Confidence 66666554444333
No 76
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=48.47 E-value=11 Score=21.65 Aligned_cols=26 Identities=19% Similarity=0.677 Sum_probs=16.9
Q ss_pred EEcCCCCCceeeceEeecccCCCCCCcceee
Q psy1204 30 VLCKDCHKESKVLYHIIGLKCEHCGSYNTCR 60 (71)
Q Consensus 30 i~CndC~~~s~v~~h~~g~kCp~C~Synt~i 60 (71)
..|.-|+... ...+| .|..|. +...+
T Consensus 48 ~~C~~C~~~~--~~~~Y--~C~~C~-f~lH~ 73 (89)
T 1v5n_A 48 YTCDKCEEEG--TIWSY--HCDECD-FDLHA 73 (89)
T ss_dssp CCCTTTSCCC--CSCEE--ECTTTC-CCCCH
T ss_pred eEeCCCCCcC--CCcEE--EcCCCC-CeEcH
Confidence 4699999874 23344 898883 55443
No 77
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=48.15 E-value=9 Score=22.05 Aligned_cols=23 Identities=22% Similarity=0.642 Sum_probs=14.0
Q ss_pred EEcCCCCCceeeceEeecccCCCCC
Q psy1204 30 VLCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 30 i~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
..|..|+++|.+...- |.|..||
T Consensus 10 ~~C~~C~~~F~~~~Rr--HHCR~CG 32 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKE--YGCKNCG 32 (88)
T ss_dssp SBCTTTCCBCCSSSCE--EECSSSC
T ss_pred CCCcCcCCcccCcccc--ccCCCCC
Confidence 3688999888754211 2555554
No 78
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=48.09 E-value=5.6 Score=23.25 Aligned_cols=12 Identities=42% Similarity=0.595 Sum_probs=8.7
Q ss_pred cccCCCCCCcce
Q psy1204 47 GLKCEHCGSYNT 58 (71)
Q Consensus 47 g~kCp~C~Synt 58 (71)
|-.||.|||.-.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 447999998643
No 79
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=47.28 E-value=8 Score=25.64 Aligned_cols=23 Identities=26% Similarity=0.681 Sum_probs=15.2
Q ss_pred EEcCCCCCceeeceEeecccCCCCC
Q psy1204 30 VLCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 30 i~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
-.|..|++.|....+ -|.|..||
T Consensus 165 ~~C~~C~~~F~~~~R--rhHCR~CG 187 (226)
T 3zyq_A 165 EECHRCRVQFGVMTR--KHHCRACG 187 (226)
T ss_dssp SBCTTTCCBCBTTBC--CEECTTTC
T ss_pred CCCcCcCCCCCcccc--ccccCCCc
Confidence 379999999985432 13666554
No 80
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=47.27 E-value=7.7 Score=21.77 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=10.3
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 28 ~h~C~~Cgk~F~~ 40 (85)
T 2lv2_A 28 CHLCPVCGESFAS 40 (85)
T ss_dssp TEECTTSCCEESS
T ss_pred CEECCCCCCCcCc
Confidence 3579999999864
No 81
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=47.27 E-value=16 Score=24.46 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=21.1
Q ss_pred eeeEEc--CCCCCceeec---eE----eecccCCCCCCcc
Q psy1204 27 ILYVLC--KDCHKESKVL---YH----IIGLKCEHCGSYN 57 (71)
Q Consensus 27 ~v~i~C--ndC~~~s~v~---~h----~~g~kCp~C~Syn 57 (71)
.+...| ..|+....+. .. ..-.+||.|++-+
T Consensus 139 ~~~f~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp~C~~~~ 178 (268)
T 2vl6_A 139 KATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKPG 178 (268)
T ss_dssp ECEEEEECTTCCCEEESSTTSCCCTTCCCCSBCTTTCCBC
T ss_pred EEEEECCCCCCCCEEeeeecccCCCcccCCccCCCCCCCC
Confidence 456789 9999876555 21 1113799999965
No 82
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=46.96 E-value=7.8 Score=25.39 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=15.8
Q ss_pred eEEcCCCCCceeeceEeecccCCCCC
Q psy1204 29 YVLCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 29 ~i~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
.-.|..|+++|....+ -|.|..||
T Consensus 161 ~~~C~~C~~~F~~~~r--rhhCr~CG 184 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNR--KHHCRNCG 184 (220)
T ss_dssp CSBCTTTCCBCCSSSC--CEECTTTC
T ss_pred CCccCCCCCccCCccc--ccccCCcC
Confidence 3589999999875321 23676665
No 83
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.82 E-value=5.8 Score=22.15 Aligned_cols=25 Identities=24% Similarity=0.650 Sum_probs=20.6
Q ss_pred eeeEEcCCCCCceeeceEeecccCCCCC
Q psy1204 27 ILYVLCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 27 ~v~i~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
+..++|.-||.. .||.--..|..||
T Consensus 15 ~tH~lCrRCG~~---syH~qK~~Ca~CG 39 (62)
T 3j21_e 15 PTHIRCRRCGRV---SYNVKKGYCAACG 39 (62)
T ss_dssp CCCCBCSSSCSB---CEETTTTEETTTC
T ss_pred CceeeecccCcc---hhccccccccccC
Confidence 378999999984 6777777899997
No 84
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=46.09 E-value=7 Score=26.12 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=18.9
Q ss_pred eeeEEcCCCCCceeeceEe------ecccCCCCCCc
Q psy1204 27 ILYVLCKDCHKESKVLYHI------IGLKCEHCGSY 56 (71)
Q Consensus 27 ~v~i~CndC~~~s~v~~h~------~g~kCp~C~Sy 56 (71)
-....|..|++........ ..-.||.||+.
T Consensus 119 ~~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~ 154 (246)
T 1yc5_A 119 VEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSL 154 (246)
T ss_dssp EEEEEETTTCCEEEHHHHHHHTTTCSSCBCTTTCCB
T ss_pred cceeEcCCCCCCCcHHHHHHHhccCCCCCCCCCCCc
Confidence 3467899999865432210 12389999874
No 85
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=45.77 E-value=8.7 Score=26.32 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=19.7
Q ss_pred cceeeEEcCCCCCceeeceE---------eecccCCCCCCc
Q psy1204 25 NVILYVLCKDCHKESKVLYH---------IIGLKCEHCGSY 56 (71)
Q Consensus 25 ~~~v~i~CndC~~~s~v~~h---------~~g~kCp~C~Sy 56 (71)
..-....|..|++....... ...-.||.||+.
T Consensus 132 G~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~C~~Cgg~ 172 (289)
T 1q1a_A 132 GSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGEL 172 (289)
T ss_dssp EEEEEEEETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCB
T ss_pred CCcCceEECCCCCCCcHHHHHHHHhhccCCCCccCCCCCCE
Confidence 33456789999887653210 011389999873
No 86
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=45.10 E-value=3.8 Score=24.45 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=8.0
Q ss_pred eEeecccCCCCCC
Q psy1204 43 YHIIGLKCEHCGS 55 (71)
Q Consensus 43 ~h~~g~kCp~C~S 55 (71)
...+ |||+||-
T Consensus 49 ~F~F--kCP~CgE 59 (95)
T 2k5c_A 49 EFVF--KCPVCGE 59 (95)
T ss_dssp HSEE--ECTTTCC
T ss_pred HHhh--cCCCccH
Confidence 3455 9999974
No 87
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=44.81 E-value=7.7 Score=15.45 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=9.2
Q ss_pred EcCCCCCceeec
Q psy1204 31 LCKDCHKESKVL 42 (71)
Q Consensus 31 ~CndC~~~s~v~ 42 (71)
.|..|++.|...
T Consensus 3 ~C~~C~k~f~~~ 14 (27)
T 1znf_A 3 KCGLCERSFVEK 14 (27)
T ss_dssp BCSSSCCBCSSH
T ss_pred cCCCCCCcCCCH
Confidence 588999888643
No 88
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=44.25 E-value=11 Score=15.18 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=9.6
Q ss_pred EEcCCCCCceeec
Q psy1204 30 VLCKDCHKESKVL 42 (71)
Q Consensus 30 i~CndC~~~s~v~ 42 (71)
..|..|++.|...
T Consensus 4 ~~C~~C~k~f~~~ 16 (28)
T 2kvf_A 4 YSCSVCGKRFSLK 16 (28)
T ss_dssp EECSSSCCEESCH
T ss_pred ccCCCCCcccCCH
Confidence 5688999887643
No 89
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=44.13 E-value=8.9 Score=20.50 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=16.1
Q ss_pred EEcCCCCCceee-ceEeecccCCCCCCc
Q psy1204 30 VLCKDCHKESKV-LYHIIGLKCEHCGSY 56 (71)
Q Consensus 30 i~CndC~~~s~v-~~h~~g~kCp~C~Sy 56 (71)
..|.+|+....+ .+-.--+.|..||.-
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGLV 39 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCCE
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCCE
Confidence 369999874432 221122389999865
No 90
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=43.59 E-value=4.3 Score=19.34 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=10.3
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (48)
T 2epr_A 12 QVACEICGKIFRD 24 (48)
T ss_dssp SEEETTTTEEESS
T ss_pred CeeCCCCCcccCC
Confidence 4679999988853
No 91
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=43.08 E-value=12 Score=14.97 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=9.7
Q ss_pred EEcCCCCCceeec
Q psy1204 30 VLCKDCHKESKVL 42 (71)
Q Consensus 30 i~CndC~~~s~v~ 42 (71)
..|..|++.|...
T Consensus 4 ~~C~~C~~~f~~~ 16 (30)
T 2m0d_A 4 YQCDYCGRSFSDP 16 (30)
T ss_dssp EECTTTCCEESCH
T ss_pred ccCCCCCcccCCH
Confidence 5688999887643
No 92
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=42.80 E-value=9.2 Score=23.51 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=17.0
Q ss_pred EEcCCCCCceeeceEeecccCCCCCC
Q psy1204 30 VLCKDCHKESKVLYHIIGLKCEHCGS 55 (71)
Q Consensus 30 i~CndC~~~s~v~~h~~g~kCp~C~S 55 (71)
..|..|+..|.+.. --|.|..||.
T Consensus 20 ~~C~~C~~~Fs~~~--RkHHCR~CG~ 43 (120)
T 1y02_A 20 PSCKSCGAHFANTA--RKQTCLDCKK 43 (120)
T ss_dssp CCCTTTCCCCSSGG--GCEECTTTCC
T ss_pred CcccCcCCcccccc--ccccCCCCCC
Confidence 47999999997632 2247887764
No 93
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=42.78 E-value=19 Score=19.74 Aligned_cols=21 Identities=24% Similarity=0.610 Sum_probs=14.5
Q ss_pred EEcCCCCC--ceeeceEeecccCCCCCC
Q psy1204 30 VLCKDCHK--ESKVLYHIIGLKCEHCGS 55 (71)
Q Consensus 30 i~CndC~~--~s~v~~h~~g~kCp~C~S 55 (71)
.+|.-|+. +....| +||.|+.
T Consensus 12 ~~C~vC~~~~~~~akY-----~CPrC~~ 34 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARY-----TCPRCNA 34 (59)
T ss_dssp EEECSSCTTCCEEECE-----ECTTTCC
T ss_pred CcCcCCCCCcCCCccc-----cCcCCCC
Confidence 47888875 244444 9999974
No 94
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=42.75 E-value=11 Score=15.12 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=9.4
Q ss_pred EEcCCCCCceeec
Q psy1204 30 VLCKDCHKESKVL 42 (71)
Q Consensus 30 i~CndC~~~s~v~ 42 (71)
..|..|++.|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 1rik_A 3 FACPECPKRFMRS 15 (29)
T ss_dssp EECSSSSCEESCS
T ss_pred ccCCCCCchhCCH
Confidence 4688898877643
No 95
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=42.53 E-value=8.2 Score=24.65 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=17.1
Q ss_pred EEcCCCCCceeeceEeecccCCCCCCc
Q psy1204 30 VLCKDCHKESKVLYHIIGLKCEHCGSY 56 (71)
Q Consensus 30 i~CndC~~~s~v~~h~~g~kCp~C~Sy 56 (71)
-.|..|+.+.+-.--.++ .||.|+-.
T Consensus 28 P~CP~C~seytYeDg~l~-vCPeC~hE 53 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGALL-VCPECAHE 53 (138)
T ss_dssp CCCTTTCCCCCEECSSSE-EETTTTEE
T ss_pred CCCCCCCCcceEecCCeE-ECCccccc
Confidence 458889887765443332 89999653
No 96
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=42.15 E-value=9.5 Score=23.65 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=18.5
Q ss_pred ceeeEEcCCCCCceeeceEeecccCCCCC
Q psy1204 26 VILYVLCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 26 ~~v~i~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
+.....|..||+......-.-..+|+.|+
T Consensus 57 q~akytCPfCGk~~vKR~avGIW~C~~Cg 85 (116)
T 3cc2_Z 57 MNEDHACPNCGEDRVDRQGTGIWQCSYCD 85 (116)
T ss_dssp HHSCEECSSSCCEEEEEEETTEEEETTTC
T ss_pred hccCCcCCCCCCceeEecCceeEECCCCC
Confidence 45678999999865433211122899885
No 97
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=41.60 E-value=12 Score=14.84 Aligned_cols=12 Identities=25% Similarity=0.803 Sum_probs=8.7
Q ss_pred EEcCCCCCceee
Q psy1204 30 VLCKDCHKESKV 41 (71)
Q Consensus 30 i~CndC~~~s~v 41 (71)
..|..|++.|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2m0f_A 3 LKCRECGKQFTT 14 (29)
T ss_dssp EECTTTSCEESC
T ss_pred ccCCCCCCccCC
Confidence 468888887754
No 98
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=41.38 E-value=12 Score=21.05 Aligned_cols=26 Identities=15% Similarity=0.469 Sum_probs=14.3
Q ss_pred eEEcCCCCCceeeceEeecccCCCCC
Q psy1204 29 YVLCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 29 ~i~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
...|.+|+.-........-..||.|+
T Consensus 25 ~~wCP~C~~~~~~~~~~~~v~C~~C~ 50 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCPQCH 50 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTC
T ss_pred EeECcCCCchheecCCCCceEeCCCC
Confidence 44688888755432212223777775
No 99
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=41.23 E-value=6.7 Score=22.05 Aligned_cols=27 Identities=33% Similarity=0.808 Sum_probs=17.4
Q ss_pred eEEcCCCCCce-eec----eEee-----cccCCCCCC
Q psy1204 29 YVLCKDCHKES-KVL----YHII-----GLKCEHCGS 55 (71)
Q Consensus 29 ~i~CndC~~~s-~v~----~h~~-----g~kCp~C~S 55 (71)
...|..|++.| ... .|.. -.+|+.|+-
T Consensus 34 ~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk 70 (96)
T 2ctd_A 34 SVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGK 70 (96)
T ss_dssp CEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCC
T ss_pred CcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCC
Confidence 47899999999 432 2211 127998864
No 100
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=40.28 E-value=16 Score=21.20 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=10.8
Q ss_pred eeeEEcCCCCCcee
Q psy1204 27 ILYVLCKDCHKESK 40 (71)
Q Consensus 27 ~v~i~CndC~~~s~ 40 (71)
+....|..||....
T Consensus 25 m~~y~C~vCGyvYD 38 (81)
T 2kn9_A 25 YKLFRCIQCGFEYD 38 (81)
T ss_dssp CCEEEETTTCCEEE
T ss_pred cceEEeCCCCEEEc
Confidence 34789999997664
No 101
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=40.26 E-value=20 Score=20.75 Aligned_cols=12 Identities=33% Similarity=0.639 Sum_probs=6.4
Q ss_pred eEEcCCCCCcee
Q psy1204 29 YVLCKDCHKESK 40 (71)
Q Consensus 29 ~i~CndC~~~s~ 40 (71)
..-|-||++.|.
T Consensus 37 ~~SCIDC~~~F~ 48 (79)
T 1wjv_A 37 CLSCIDCGKDFW 48 (79)
T ss_dssp EEEETTTTEEEE
T ss_pred cEEecccCCeeC
Confidence 445555555554
No 102
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=39.87 E-value=10 Score=15.40 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=9.1
Q ss_pred EEcCCCCCceee
Q psy1204 30 VLCKDCHKESKV 41 (71)
Q Consensus 30 i~CndC~~~s~v 41 (71)
..|..|++.|..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvg_A 4 YRCPLCRAGCPS 15 (27)
T ss_dssp EEETTTTEEESC
T ss_pred cCCCCCCcccCC
Confidence 468899987764
No 103
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=39.10 E-value=10 Score=25.71 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=19.2
Q ss_pred eEEcCCCCCceeeceEeecccCCCCCCc
Q psy1204 29 YVLCKDCHKESKVLYHIIGLKCEHCGSY 56 (71)
Q Consensus 29 ~i~CndC~~~s~v~~h~~g~kCp~C~Sy 56 (71)
.-+|..||.............|+.|+..
T Consensus 107 ~~fC~~CG~~~~~~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 107 HKYCGYCGHEMYPSKTEWAMLCSHCRER 134 (269)
T ss_dssp TSBCTTTCCBEEECSSSSCEEESSSSCE
T ss_pred CCccccCCCcCccCCCceeeeCCCCCCE
Confidence 4589999987754433333489999764
No 104
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.92 E-value=16 Score=21.36 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=5.4
Q ss_pred cCCCCCCccee
Q psy1204 49 KCEHCGSYNTC 59 (71)
Q Consensus 49 kCp~C~Synt~ 59 (71)
.||+|++..++
T Consensus 37 ~CpfCGk~~vk 47 (83)
T 3j21_i 37 TCPVCGRKAVK 47 (83)
T ss_dssp CCSSSCSSCEE
T ss_pred CCCCCCCceeE
Confidence 45555554443
No 105
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=38.65 E-value=9.3 Score=27.38 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=20.0
Q ss_pred cceeeEEcCCCCCceeeceE---------eecccCCCCCCc
Q psy1204 25 NVILYVLCKDCHKESKVLYH---------IIGLKCEHCGSY 56 (71)
Q Consensus 25 ~~~v~i~CndC~~~s~v~~h---------~~g~kCp~C~Sy 56 (71)
.......|..|++.+..... ...-.||.||+.
T Consensus 140 Gsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~Cp~Cgg~ 180 (361)
T 1q14_A 140 GSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGEL 180 (361)
T ss_dssp EEEEEEEETTTCCEECTHHHHHHTTSSSCSCCCBCTTTCCB
T ss_pred ccccccCcCCCCccCcHHHHHHHHhhcccCCCCCCcCCCCE
Confidence 44557789999986653210 011389999973
No 106
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.59 E-value=15 Score=19.83 Aligned_cols=20 Identities=35% Similarity=0.806 Sum_probs=13.8
Q ss_pred EEcCCCCCceeeceEeecccCCCCCCc
Q psy1204 30 VLCKDCHKESKVLYHIIGLKCEHCGSY 56 (71)
Q Consensus 30 i~CndC~~~s~v~~h~~g~kCp~C~Sy 56 (71)
.+|.-|+. ...| +||.|+..
T Consensus 13 ~~C~vC~~--~~kY-----~CPrC~~~ 32 (56)
T 2yqq_A 13 VVCVICLE--KPKY-----RCPACRVP 32 (56)
T ss_dssp CCCTTTCS--CCSE-----ECTTTCCE
T ss_pred CccCcCcC--CCee-----eCCCCCCC
Confidence 36888876 4444 89999753
No 107
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=38.42 E-value=11 Score=15.03 Aligned_cols=13 Identities=15% Similarity=0.483 Sum_probs=9.6
Q ss_pred EEcCCCCCceeec
Q psy1204 30 VLCKDCHKESKVL 42 (71)
Q Consensus 30 i~CndC~~~s~v~ 42 (71)
..|..|++.|...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 1ard_A 3 FVCEVCTRAFARQ 15 (29)
T ss_dssp CBCTTTCCBCSSH
T ss_pred eECCCCCcccCCH
Confidence 3589999888643
No 108
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=44.48 E-value=6.7 Score=15.70 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=8.8
Q ss_pred EEcCCCCCceeec
Q psy1204 30 VLCKDCHKESKVL 42 (71)
Q Consensus 30 i~CndC~~~s~v~ 42 (71)
..|..|++.|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 3578888877643
No 109
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=37.82 E-value=15 Score=19.28 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=8.3
Q ss_pred eEEcCCCCCcee
Q psy1204 29 YVLCKDCHKESK 40 (71)
Q Consensus 29 ~i~CndC~~~s~ 40 (71)
...|..||..-.
T Consensus 3 ~y~C~~CGyvYd 14 (52)
T 1e8j_A 3 IYVCTVCGYEYD 14 (52)
T ss_dssp CEECSSSCCCCC
T ss_pred cEEeCCCCeEEc
Confidence 457888886653
No 110
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=37.60 E-value=28 Score=21.68 Aligned_cols=39 Identities=15% Similarity=0.322 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHcCCC-----CH---hhhc----ceeeEEcCCCCCcee
Q psy1204 2 DMTPLWRQMDEEIASTPM-----PE---EYKN----VILYVLCKDCHKESK 40 (71)
Q Consensus 2 dm~~~~~~lD~~i~~~pm-----P~---~y~~----~~v~i~CndC~~~s~ 40 (71)
+.+..+|.||.+.+.--+ +. -|.- .-.-+.|..||+...
T Consensus 68 s~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y~~~~~~~H~HliC~~CG~v~e 118 (162)
T 4ets_A 68 GIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDHMICKNCGKIIE 118 (162)
T ss_dssp CHHHHHHHHHHHHHTTSEEECC-----CCEEECCCCCCEEEEETTTCCEEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCceEEEeCCCCCccEEEECCCCCEEE
Confidence 345677888877665432 22 1321 123478999998654
No 111
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=37.59 E-value=27 Score=19.42 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=20.3
Q ss_pred eeEEcCCCCCceee-------------ceEeec--ccCCCCCCcceeee
Q psy1204 28 LYVLCKDCHKESKV-------------LYHIIG--LKCEHCGSYNTCRI 61 (71)
Q Consensus 28 v~i~CndC~~~s~v-------------~~h~~g--~kCp~C~Synt~ii 61 (71)
....|..||..-.. +|-.+- -+||.|+.--..-.
T Consensus 6 ~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~K~~F~ 54 (70)
T 1dx8_A 6 GKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKNQFK 54 (70)
T ss_dssp SCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCBGGGEE
T ss_pred ceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCCHHHce
Confidence 46789999976541 111111 17999988544433
No 112
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.40 E-value=15 Score=15.48 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=9.7
Q ss_pred EEcCCCCCceee
Q psy1204 30 VLCKDCHKESKV 41 (71)
Q Consensus 30 i~CndC~~~s~v 41 (71)
..|..|++.|..
T Consensus 8 ~~C~~C~k~f~~ 19 (35)
T 2elx_A 8 YVCALCLKKFVS 19 (35)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCcchhCC
Confidence 679999988864
No 113
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.38 E-value=6.4 Score=21.78 Aligned_cols=12 Identities=17% Similarity=0.650 Sum_probs=9.5
Q ss_pred eEEcCCCCCcee
Q psy1204 29 YVLCKDCHKESK 40 (71)
Q Consensus 29 ~i~CndC~~~s~ 40 (71)
...|..|++.|.
T Consensus 24 ~~~C~~C~k~f~ 35 (98)
T 2gqj_A 24 EAVCPTCNVVTR 35 (98)
T ss_dssp CCCCTTTCCCCS
T ss_pred CcCCCCCCCChh
Confidence 467889998887
No 114
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=37.18 E-value=17 Score=21.02 Aligned_cols=30 Identities=17% Similarity=0.429 Sum_probs=19.6
Q ss_pred eeEEcCCCCCceeec-------eEeecccCCCCCCcceeee
Q psy1204 28 LYVLCKDCHKESKVL-------YHIIGLKCEHCGSYNTCRI 61 (71)
Q Consensus 28 v~i~CndC~~~s~v~-------~h~~g~kCp~C~Synt~ii 61 (71)
-..-|. ||..|.+. ...+ .|+.| |--++|+
T Consensus 22 y~ypCr-CGd~F~it~edL~~ge~iv--~C~sC-SL~I~V~ 58 (83)
T 1yop_A 22 FTYPCP-CGDRFQIYLDDMFEGEKVA--VCPSC-SLMIDVV 58 (83)
T ss_dssp EEEEET-TTEEEEEEHHHHHTTCCEE--ECSSS-CCEEECB
T ss_pred EEEeCC-CCCeEEECHHHHhCCCEEE--ECCCC-ccEEEEE
Confidence 355687 99888763 3344 89999 5555554
No 115
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=36.95 E-value=13 Score=15.08 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=9.2
Q ss_pred EcCCCCCceeec
Q psy1204 31 LCKDCHKESKVL 42 (71)
Q Consensus 31 ~CndC~~~s~v~ 42 (71)
.|..|++.|...
T Consensus 4 ~C~~C~k~f~~~ 15 (30)
T 1paa_A 4 ACGLCNRAFTRR 15 (30)
T ss_dssp BCTTTCCBCSSS
T ss_pred CCcccCcccCCh
Confidence 589999888643
No 116
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=36.85 E-value=23 Score=21.43 Aligned_cols=9 Identities=33% Similarity=1.125 Sum_probs=4.7
Q ss_pred EEcCCCCCc
Q psy1204 30 VLCKDCHKE 38 (71)
Q Consensus 30 i~CndC~~~ 38 (71)
.+|.+||.-
T Consensus 5 ~FCp~Cgnl 13 (122)
T 1twf_I 5 RFCRDCNNM 13 (122)
T ss_dssp CBCSSSCCB
T ss_pred CcccccCcc
Confidence 455555543
No 117
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=36.85 E-value=12 Score=14.81 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=8.8
Q ss_pred EcCCCCCceeec
Q psy1204 31 LCKDCHKESKVL 42 (71)
Q Consensus 31 ~CndC~~~s~v~ 42 (71)
.|..|++.|...
T Consensus 4 ~C~~C~~~f~~~ 15 (29)
T 2m0e_A 4 KCPHCDKKFNQV 15 (29)
T ss_dssp CCSSCCCCCCTT
T ss_pred cCCCCCcccCCH
Confidence 588899887543
No 118
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.31 E-value=17 Score=15.95 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=10.8
Q ss_pred eEEcCCCCCceeec
Q psy1204 29 YVLCKDCHKESKVL 42 (71)
Q Consensus 29 ~i~CndC~~~s~v~ 42 (71)
...|..|++.|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (37)
T 2elm_A 9 LYYCSQCHYSSITK 22 (37)
T ss_dssp EEECSSSSCEEECH
T ss_pred CeECCCCCcccCCH
Confidence 36799999988653
No 119
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=36.28 E-value=17 Score=25.25 Aligned_cols=29 Identities=24% Similarity=0.624 Sum_probs=17.9
Q ss_pred eeeEEcCCCCCceeeceEe----------ecccCCCCCCc
Q psy1204 27 ILYVLCKDCHKESKVLYHI----------IGLKCEHCGSY 56 (71)
Q Consensus 27 ~v~i~CndC~~~s~v~~h~----------~g~kCp~C~Sy 56 (71)
.-...|..|++.......+ ..-.|| |++.
T Consensus 152 ~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C~-Cgg~ 190 (290)
T 3u31_A 152 VFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP-CGGI 190 (290)
T ss_dssp EEEEEETTTCCEEECCTGGGSTTSSTTTSSSCBCT-TSCB
T ss_pred cCcceeCCCCCcCChhHhhhcccccccccCCCCCC-CCCE
Confidence 3467899999876533211 123799 9864
No 120
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=35.70 E-value=14 Score=25.96 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=7.4
Q ss_pred cCCCCCCcceee
Q psy1204 49 KCEHCGSYNTCR 60 (71)
Q Consensus 49 kCp~C~Synt~i 60 (71)
+||.|+++.+.+
T Consensus 23 ~Cp~C~~~~~~l 34 (345)
T 4bbr_M 23 TCPECKVYPPKI 34 (345)
T ss_dssp CCSSCCCSSCCE
T ss_pred cCCCCCCCCCce
Confidence 677777654444
No 121
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.75 E-value=17 Score=15.59 Aligned_cols=14 Identities=14% Similarity=0.320 Sum_probs=10.7
Q ss_pred eEEcCCCCCceeec
Q psy1204 29 YVLCKDCHKESKVL 42 (71)
Q Consensus 29 ~i~CndC~~~s~v~ 42 (71)
...|..|++.|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (36)
T 2elq_A 9 PFKCSLCEYATRSK 22 (36)
T ss_dssp SEECSSSSCEESCH
T ss_pred CccCCCCCchhCCH
Confidence 36799999988643
No 122
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=34.68 E-value=17 Score=20.05 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=8.2
Q ss_pred ccCCCCCCcce
Q psy1204 48 LKCEHCGSYNT 58 (71)
Q Consensus 48 ~kCp~C~Synt 58 (71)
++||.|++-.+
T Consensus 3 m~Cp~Cg~~~l 13 (78)
T 3ga8_A 3 MKCPVCHQGEM 13 (78)
T ss_dssp CBCTTTSSSBE
T ss_pred eECCCCCCCee
Confidence 48999987543
No 123
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=34.63 E-value=33 Score=20.58 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHHHHcCCCCHhhhcceeeEEc
Q psy1204 2 DMTPLWRQMDEEIASTPMPEEYKNVILYVLC 32 (71)
Q Consensus 2 dm~~~~~~lD~~i~~~pmP~~y~~~~v~i~C 32 (71)
|++.+.+.|++.|++.| .-|++.+|++--
T Consensus 26 d~~~l~~~L~~ki~~aP--~FF~~aPVVlDl 54 (120)
T 3ghf_A 26 EPEVIRQALEDKIAQAP--AFLKHAPVVINV 54 (120)
T ss_dssp CHHHHHHHHHHHHHHSH--HHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHhCh--HhhCCCcEEEEc
Confidence 67788899999999886 678999998854
No 124
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.60 E-value=19 Score=15.44 Aligned_cols=14 Identities=29% Similarity=0.486 Sum_probs=10.7
Q ss_pred eEEcCCCCCceeec
Q psy1204 29 YVLCKDCHKESKVL 42 (71)
Q Consensus 29 ~i~CndC~~~s~v~ 42 (71)
...|..|++.|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (36)
T 2els_A 9 IFTCEYCNKVFKFK 22 (36)
T ss_dssp CEECTTTCCEESSH
T ss_pred CEECCCCCceeCCH
Confidence 46799999988643
No 125
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=34.35 E-value=13 Score=14.84 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=9.4
Q ss_pred EEcCCCCCceeec
Q psy1204 30 VLCKDCHKESKVL 42 (71)
Q Consensus 30 i~CndC~~~s~v~ 42 (71)
..|..|++.|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1klr_A 3 YQCQYCEFRSADS 15 (30)
T ss_dssp CCCSSSSCCCSCS
T ss_pred ccCCCCCCccCCH
Confidence 3588999887643
No 126
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=33.94 E-value=8.6 Score=26.97 Aligned_cols=24 Identities=21% Similarity=0.707 Sum_probs=0.0
Q ss_pred eEEcCCCCCceeeceEeecccCCCCC
Q psy1204 29 YVLCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 29 ~i~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
.-.|..|+..|....+ .|.|..||
T Consensus 375 ~~~c~~c~~~f~~~~r--~h~Cr~Cg 398 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLR--RHHCHACG 398 (434)
T ss_dssp --------------------------
T ss_pred CCcCCCcCCCCCCcch--hhhcccCc
Confidence 5579999998875432 23666554
No 127
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.74 E-value=15 Score=15.69 Aligned_cols=13 Identities=38% Similarity=0.585 Sum_probs=10.2
Q ss_pred EEcCCCCCceeec
Q psy1204 30 VLCKDCHKESKVL 42 (71)
Q Consensus 30 i~CndC~~~s~v~ 42 (71)
..|..|++.|...
T Consensus 10 ~~C~~C~k~f~~~ 22 (36)
T 2elr_A 10 HLCDMCGKKFKSK 22 (36)
T ss_dssp CBCTTTCCBCSSH
T ss_pred eecCcCCCCcCch
Confidence 5799999988643
No 128
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=33.63 E-value=19 Score=21.12 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=10.7
Q ss_pred eeeEEcCCCCCcee
Q psy1204 27 ILYVLCKDCHKESK 40 (71)
Q Consensus 27 ~v~i~CndC~~~s~ 40 (71)
+....|..||....
T Consensus 33 m~~y~C~vCGyvYD 46 (87)
T 1s24_A 33 YLKWICITCGHIYD 46 (87)
T ss_dssp CCEEEETTTTEEEE
T ss_pred CceEECCCCCeEec
Confidence 45789999996654
No 129
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=33.43 E-value=14 Score=25.86 Aligned_cols=10 Identities=30% Similarity=0.929 Sum_probs=7.1
Q ss_pred cCCCCCCcce
Q psy1204 49 KCEHCGSYNT 58 (71)
Q Consensus 49 kCp~C~Synt 58 (71)
+||.|++.++
T Consensus 23 ~Cp~Cg~~~~ 32 (345)
T 3k7a_M 23 TCPECKVYPP 32 (345)
T ss_dssp CCSTTCCSCC
T ss_pred cCcCCCCCCC
Confidence 7777777654
No 130
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=33.35 E-value=21 Score=20.86 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=8.7
Q ss_pred ccCCCCCCcce
Q psy1204 48 LKCEHCGSYNT 58 (71)
Q Consensus 48 ~kCp~C~Synt 58 (71)
++||.|++-..
T Consensus 3 M~Cp~Cg~~~~ 13 (133)
T 3o9x_A 3 MKCPVCHQGEM 13 (133)
T ss_dssp CBCTTTSSSBE
T ss_pred cCCCcCCCCce
Confidence 48999998754
No 131
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=39.60 E-value=8.9 Score=15.56 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=9.5
Q ss_pred EEcCCCCCceeece
Q psy1204 30 VLCKDCHKESKVLY 43 (71)
Q Consensus 30 i~CndC~~~s~v~~ 43 (71)
..|..|++.|....
T Consensus 4 ~~C~~C~k~f~~~~ 17 (30)
T 2lvr_A 4 YVCIHCQRQFADPG 17 (30)
Confidence 46888888776433
No 132
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=39.57 E-value=8.9 Score=15.60 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=9.3
Q ss_pred EEcCCCCCceeece
Q psy1204 30 VLCKDCHKESKVLY 43 (71)
Q Consensus 30 i~CndC~~~s~v~~ 43 (71)
..|..|++.|....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (29)
T 2lvt_A 3 CQCVMCGKAFTQAS 16 (29)
Confidence 35888888776443
No 133
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=32.99 E-value=27 Score=19.78 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=18.5
Q ss_pred cceeeEEcCCCCCceeece-EeecccCCCCC
Q psy1204 25 NVILYVLCKDCHKESKVLY-HIIGLKCEHCG 54 (71)
Q Consensus 25 ~~~v~i~CndC~~~s~v~~-h~~g~kCp~C~ 54 (71)
.+.....|..|++...-.. .-++ +|.+|+
T Consensus 23 ~q~~ky~C~fCgk~~vkR~a~GIW-~C~~C~ 52 (73)
T 1ffk_W 23 KHKKKYKCPVCGFPKLKRASTSIW-VCGHCG 52 (73)
T ss_pred hcccCccCCCCCCceeEEEEeEEE-ECCCCC
Confidence 3456778999997654332 2333 788884
No 134
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.78 E-value=15 Score=19.87 Aligned_cols=27 Identities=37% Similarity=0.896 Sum_probs=17.7
Q ss_pred EEcCCCCCceeeceEeecccCCCCCCccee
Q psy1204 30 VLCKDCHKESKVLYHIIGLKCEHCGSYNTC 59 (71)
Q Consensus 30 i~CndC~~~s~v~~h~~g~kCp~C~Synt~ 59 (71)
+.|..|+..-.+ ...+ ||..|-.|+.-
T Consensus 12 ~~Cd~C~~~pi~-G~Ry--kC~~C~d~DLC 38 (63)
T 2e5r_A 12 VECSYCHSESMM-GFRY--RCQQCHNYQLC 38 (63)
T ss_dssp SCCSSSCCCSSC-SCEE--EESSCSSCEEC
T ss_pred CCCcCCCCccee-cceE--EecCCCCchhH
Confidence 679999864332 3344 88888777653
No 135
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=32.75 E-value=22 Score=21.15 Aligned_cols=9 Identities=33% Similarity=0.685 Sum_probs=4.3
Q ss_pred EEcCCCCCc
Q psy1204 30 VLCKDCHKE 38 (71)
Q Consensus 30 i~CndC~~~ 38 (71)
..|..|++.
T Consensus 37 y~CpfCgk~ 45 (92)
T 3iz5_m 37 YFCEFCGKF 45 (92)
T ss_dssp BCCTTTCSS
T ss_pred ccCcccCCC
Confidence 345555543
No 136
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=32.75 E-value=24 Score=18.73 Aligned_cols=12 Identities=17% Similarity=0.094 Sum_probs=8.6
Q ss_pred eEEcCCCCCcee
Q psy1204 29 YVLCKDCHKESK 40 (71)
Q Consensus 29 ~i~CndC~~~s~ 40 (71)
...|..||....
T Consensus 3 ~y~C~~CGyvYd 14 (55)
T 2v3b_B 3 KWQCVVCGFIYD 14 (55)
T ss_dssp EEEETTTCCEEE
T ss_pred cEEeCCCCeEEC
Confidence 467889987654
No 137
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=32.73 E-value=32 Score=23.18 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=22.4
Q ss_pred eeeEEcCCCCCceee------------ceEeecccCCCCCCcce-eee
Q psy1204 27 ILYVLCKDCHKESKV------------LYHIIGLKCEHCGSYNT-CRI 61 (71)
Q Consensus 27 ~v~i~CndC~~~s~v------------~~h~~g~kCp~C~Synt-~ii 61 (71)
...+.|. |+.+... .-+.+| -|++|+++.+ ++.
T Consensus 89 v~~~~C~-Cg~~~~~~~G~v~~~~~~~~~~~~g-~C~~c~~~~~~~v~ 134 (211)
T 3mp2_A 89 VLAAKCG-CGEKEIVLERAVFKLTPLKESFNYG-VCGDCMQVNTCRFL 134 (211)
T ss_dssp EEEEEET-TEEEEEEEEESEEESCCBSSCEEEE-ECTTTCCEEEEEEE
T ss_pred EEEEEEc-CCCceEEEeeeEEEEEeeecCCCce-ECCCCCceeEEEEE
Confidence 3478898 9974321 114444 8999999999 554
No 138
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=32.49 E-value=17 Score=21.49 Aligned_cols=26 Identities=23% Similarity=0.591 Sum_probs=16.2
Q ss_pred EEcCCCCCceeeceEeecccCCCCCCcce
Q psy1204 30 VLCKDCHKESKVLYHIIGLKCEHCGSYNT 58 (71)
Q Consensus 30 i~CndC~~~s~v~~h~~g~kCp~C~Synt 58 (71)
+.|..|+..-.+ ...+ ||..|-.|+.
T Consensus 32 v~Cd~C~~~pI~-G~Ry--kC~~C~d~DL 57 (98)
T 2dip_A 32 IPCNNCKQFPIE-GKCY--KCTECIEYHL 57 (98)
T ss_dssp CCCSSSCCSSCC-SCEE--EESSSSSCEE
T ss_pred CCCcCCCCCCcc-cCeE--ECCCCCCccH
Confidence 789999864322 2334 7777766643
No 139
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=32.19 E-value=21 Score=22.74 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=17.7
Q ss_pred cCCCCHhhhcc--eeeEEcCCCCCcee
Q psy1204 16 STPMPEEYKNV--ILYVLCKDCHKESK 40 (71)
Q Consensus 16 ~~pmP~~y~~~--~v~i~CndC~~~s~ 40 (71)
..++|..|.++ ...|.|.+||+..-
T Consensus 54 ~~~~~k~f~d~~~~g~I~C~~Cgq~WG 80 (145)
T 3eqt_A 54 PVVINKVFKDWKPGGVISCRNCGEVWG 80 (145)
T ss_dssp ECCCSSCCSSEEEEEEEEETTTCCEEE
T ss_pred CCCCCcccccccCCcEEEchhhChhhH
Confidence 34556665544 57999999998764
No 140
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=32.00 E-value=21 Score=15.09 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=10.1
Q ss_pred EEcCCCCCceeec
Q psy1204 30 VLCKDCHKESKVL 42 (71)
Q Consensus 30 i~CndC~~~s~v~ 42 (71)
..|..|++.|...
T Consensus 8 ~~C~~C~k~f~~~ 20 (35)
T 1srk_A 8 FVCRICLSAFTTK 20 (35)
T ss_dssp EECSSSCCEESSH
T ss_pred eeCCCCCcccCCH
Confidence 6799999988643
No 141
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.78 E-value=21 Score=15.42 Aligned_cols=14 Identities=14% Similarity=0.059 Sum_probs=10.6
Q ss_pred eEEcCCCCCceeec
Q psy1204 29 YVLCKDCHKESKVL 42 (71)
Q Consensus 29 ~i~CndC~~~s~v~ 42 (71)
...|..|++.|.-.
T Consensus 9 ~~~C~~C~k~f~~~ 22 (37)
T 2elp_A 9 AMKCPYCDFYFMKN 22 (37)
T ss_dssp CEECSSSSCEECSS
T ss_pred CeECCCCChhhccC
Confidence 36799999887654
No 142
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=31.62 E-value=16 Score=25.39 Aligned_cols=29 Identities=14% Similarity=0.376 Sum_probs=20.8
Q ss_pred eeEEcCCCCCceeece--EeecccCCCCCCcc
Q psy1204 28 LYVLCKDCHKESKVLY--HIIGLKCEHCGSYN 57 (71)
Q Consensus 28 v~i~CndC~~~s~v~~--h~~g~kCp~C~Syn 57 (71)
++.+|..|++.-..+. .+++ .||.|+.+.
T Consensus 23 l~~kc~~~~~~~~~~~l~~~~~-v~~~~~~~~ 53 (304)
T 2f9y_B 23 VWTKCDSCGQVLYRAELERNLE-VCPKCDHHM 53 (304)
T ss_dssp CEECCTTTCCCEETTHHHHTTT-BCTTTCCBC
T ss_pred HHHhhhhccchhhHHHHHHHhC-CCCCCCCCC
Confidence 6889999998665552 3433 999997653
No 143
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=31.59 E-value=22 Score=20.12 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=17.5
Q ss_pred eEEcCCCCCceeec----eEee----cccCCCCCC
Q psy1204 29 YVLCKDCHKESKVL----YHII----GLKCEHCGS 55 (71)
Q Consensus 29 ~i~CndC~~~s~v~----~h~~----g~kCp~C~S 55 (71)
...|..|++.|... .|.. -.+|+.|+-
T Consensus 74 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~C~~C~k 108 (129)
T 2wbt_A 74 QFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKK 108 (129)
T ss_dssp SEECTTTCCEESSHHHHHHHHHHTCCCCBCTTTCC
T ss_pred CeECCCCCcccCCHhHHHHHHHHCCCCCCCCCCCc
Confidence 46899999998632 1211 128999964
No 144
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=31.44 E-value=17 Score=15.64 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=10.3
Q ss_pred EEcCCCCCceeec
Q psy1204 30 VLCKDCHKESKVL 42 (71)
Q Consensus 30 i~CndC~~~s~v~ 42 (71)
..|..|++.|...
T Consensus 12 ~~C~~C~k~f~~~ 24 (37)
T 1p7a_A 12 FQCPDCDRSFSRS 24 (37)
T ss_dssp BCCTTTCCCBSSH
T ss_pred ccCCCCCcccCcH
Confidence 5799999988643
No 145
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=31.20 E-value=24 Score=24.42 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=20.0
Q ss_pred cceeeEEcCCCCCceeeceE------eecccCCCCCCc
Q psy1204 25 NVILYVLCKDCHKESKVLYH------IIGLKCEHCGSY 56 (71)
Q Consensus 25 ~~~v~i~CndC~~~s~v~~h------~~g~kCp~C~Sy 56 (71)
.......|.+|++....... ...-.||.|++.
T Consensus 135 Gs~~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~ 172 (285)
T 3glr_A 135 GTFASATCTVCQRPFPGEDIRADVMADRVPRCPVCTGV 172 (285)
T ss_dssp EEEEEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTCCB
T ss_pred CCCCeEEECCCCCcCCHHHHHHHhhcCCCCCCCCCCCc
Confidence 33456789999987654321 111379999864
No 146
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=31.03 E-value=38 Score=19.53 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=20.0
Q ss_pred eeEEcCCCCCceeec-------eEeecccCCCCCCcceeee
Q psy1204 28 LYVLCKDCHKESKVL-------YHIIGLKCEHCGSYNTCRI 61 (71)
Q Consensus 28 v~i~CndC~~~s~v~-------~h~~g~kCp~C~Synt~ii 61 (71)
-..-|. ||..|.+. ...+ .|+.| |--++|+
T Consensus 29 y~y~Cr-CGd~F~it~edL~~ge~iv--~C~sC-SL~I~V~ 65 (83)
T 1wge_A 29 YFYPCP-CGDNFAITKEDLENGEDVA--TCPSC-SLIIKVI 65 (83)
T ss_dssp EEECCS-SSSCEEEEHHHHHTTCCEE--ECTTT-CCEEEEE
T ss_pred EEEeCC-CCCEEEECHHHHhCCCEEE--ECCCC-ceEEEEE
Confidence 345587 99888763 2344 89999 5555555
No 147
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=30.96 E-value=20 Score=20.32 Aligned_cols=11 Identities=27% Similarity=0.785 Sum_probs=5.4
Q ss_pred cCCCCCCccee
Q psy1204 49 KCEHCGSYNTC 59 (71)
Q Consensus 49 kCp~C~Synt~ 59 (71)
.||+|+...++
T Consensus 28 ~C~fCgk~~vk 38 (72)
T 3jyw_9 28 DCSFCGKKTVK 38 (72)
T ss_dssp CCSSCCSSCBS
T ss_pred cCCCCCCceeE
Confidence 55555544433
No 148
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.86 E-value=23 Score=15.16 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=10.6
Q ss_pred eEEcCCCCCceeec
Q psy1204 29 YVLCKDCHKESKVL 42 (71)
Q Consensus 29 ~i~CndC~~~s~v~ 42 (71)
...|..|++.|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (36)
T 2elv_A 9 LYDCHICERKFKNE 22 (36)
T ss_dssp CEECSSSCCEESSH
T ss_pred CeECCCCCCccCCH
Confidence 36799999888654
No 149
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.59 E-value=22 Score=15.06 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=10.5
Q ss_pred eEEcCCCCCceeec
Q psy1204 29 YVLCKDCHKESKVL 42 (71)
Q Consensus 29 ~i~CndC~~~s~v~ 42 (71)
...|..|++.|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (36)
T 2elt_A 9 PYKCPQCSYASAIK 22 (36)
T ss_dssp SEECSSSSCEESSH
T ss_pred CCCCCCCCcccCCH
Confidence 36799999888643
No 150
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=30.45 E-value=44 Score=20.19 Aligned_cols=9 Identities=22% Similarity=0.855 Sum_probs=5.1
Q ss_pred EEcCCCCCc
Q psy1204 30 VLCKDCHKE 38 (71)
Q Consensus 30 i~CndC~~~ 38 (71)
+.|.+|+++
T Consensus 33 ~~CP~Cq~e 41 (101)
T 2jne_A 33 LHCPQCQHV 41 (101)
T ss_dssp CBCSSSCSB
T ss_pred ccCccCCCc
Confidence 556666554
No 151
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=30.21 E-value=14 Score=15.69 Aligned_cols=12 Identities=25% Similarity=0.420 Sum_probs=9.2
Q ss_pred EcCCCCCceeec
Q psy1204 31 LCKDCHKESKVL 42 (71)
Q Consensus 31 ~CndC~~~s~v~ 42 (71)
.|..|++.|...
T Consensus 4 ~C~~C~k~f~~~ 15 (32)
T 2kfq_A 4 ACPACPKRFMRS 15 (32)
T ss_dssp SSSSSCTTHHHH
T ss_pred CCCCCCcccCCH
Confidence 589999887643
No 152
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=30.13 E-value=17 Score=15.60 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=9.2
Q ss_pred EcCCCCCceeec
Q psy1204 31 LCKDCHKESKVL 42 (71)
Q Consensus 31 ~CndC~~~s~v~ 42 (71)
.|..|++.|...
T Consensus 4 ~C~~C~k~F~~~ 15 (33)
T 1rim_A 4 ACPECPKRFMRS 15 (33)
T ss_dssp CCSSSCCCCSSH
T ss_pred cCCCCCchhCCH
Confidence 588999888643
No 153
>3h7h_A Transcription elongation factor SPT4; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=29.82 E-value=5.7 Score=24.71 Aligned_cols=35 Identities=17% Similarity=0.441 Sum_probs=22.9
Q ss_pred CCCHhhhcceeeEEcCCCCCceeeceEeecccCCCCCCc
Q psy1204 18 PMPEEYKNVILYVLCKDCHKESKVLYHIIGLKCEHCGSY 56 (71)
Q Consensus 18 pmP~~y~~~~v~i~CndC~~~s~v~~h~~g~kCp~C~Sy 56 (71)
.+|..++ -.--|..|+..-+... |....||.|+|+
T Consensus 8 ~iP~~~r---~lrAC~~C~~V~t~~q-F~~~gCpnC~~~ 42 (120)
T 3h7h_A 8 TVPKDLR---HLRACLLCSLVKTIDQ-FEYDGCDNCDAY 42 (120)
T ss_dssp GSCSSST---TEEEETTTCBEEEHHH-HHHHCCTTTHHH
T ss_pred cCCCccc---cCeeeccCCceechhh-ccCCCCCCCcch
Confidence 4566664 3567999997654433 333489999863
No 154
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=29.74 E-value=30 Score=18.11 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=7.6
Q ss_pred EEcCCCCCcee
Q psy1204 30 VLCKDCHKESK 40 (71)
Q Consensus 30 i~CndC~~~s~ 40 (71)
..|..||..-.
T Consensus 3 ~~C~~CGyvYd 13 (52)
T 1yk4_A 3 LSCKICGYIYD 13 (52)
T ss_dssp EEESSSSCEEE
T ss_pred EEeCCCCeEEC
Confidence 56888886653
No 155
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=29.62 E-value=24 Score=20.01 Aligned_cols=34 Identities=0% Similarity=-0.065 Sum_probs=21.8
Q ss_pred CCHhhhcceeeEEcCCCCCceeec----eEeecccCCCCCCc
Q psy1204 19 MPEEYKNVILYVLCKDCHKESKVL----YHIIGLKCEHCGSY 56 (71)
Q Consensus 19 mP~~y~~~~v~i~CndC~~~s~v~----~h~~g~kCp~C~Sy 56 (71)
+.++|+ ++.+.| .||..+.+. ...+- .|+.|.-+
T Consensus 5 IHP~y~--~v~~~~-s~g~~f~t~ST~~~i~vd-i~s~~HPF 42 (73)
T 1nkw_Y 5 LHPKAV--PCKIIY-QGQVVMETMSTRPEIHVD-VWSGVHPF 42 (73)
T ss_pred CCCCCE--EEEEEE-CCCCEEEEcccCCCEEEE-ECCCCCcC
Confidence 455686 488899 899988652 22222 68777544
No 156
>3v2d_4 50S ribosomal protein L31; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 2xqe_4 ...
Probab=29.57 E-value=20 Score=20.27 Aligned_cols=35 Identities=14% Similarity=0.373 Sum_probs=22.6
Q ss_pred CHhhhcceeeEEcCCCCCceeec----eEeecccCCCCCCcce
Q psy1204 20 PEEYKNVILYVLCKDCHKESKVL----YHIIGLKCEHCGSYNT 58 (71)
Q Consensus 20 P~~y~~~~v~i~CndC~~~s~v~----~h~~g~kCp~C~Synt 58 (71)
.++|+ ++.+.|. ||.+|.+. ...+ -.|+.|.-+=|
T Consensus 6 HP~Y~--~v~v~c~-~g~~f~t~ST~~~i~v-di~S~~HPFyT 44 (71)
T 3v2d_4 6 HPKLV--PARIICG-CGNVIETYSTKPEIYV-EVCSKCHPFYT 44 (71)
T ss_dssp SCCCE--EEEEEET-TSCEEEEEESSSEEEE-SCCTTTSSSSS
T ss_pred CCCCe--EEEEEEC-CCCEEEeeeeccCEEE-EecCCCCCCCC
Confidence 34575 6899997 99988652 2233 27887755433
No 157
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=29.39 E-value=24 Score=21.06 Aligned_cols=14 Identities=21% Similarity=0.653 Sum_probs=7.4
Q ss_pred eeEEcCCCCCceee
Q psy1204 28 LYVLCKDCHKESKV 41 (71)
Q Consensus 28 v~i~CndC~~~s~v 41 (71)
....|+.|+.+..+
T Consensus 25 ~~~~C~~C~y~~~~ 38 (113)
T 3h0g_I 25 LRLACRNCDYSEIA 38 (113)
T ss_dssp CCEECSSSCCEECC
T ss_pred eEEECCCCCCeEEc
Confidence 34556666555443
No 158
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.34 E-value=27 Score=19.45 Aligned_cols=28 Identities=21% Similarity=0.566 Sum_probs=17.2
Q ss_pred eEEcCCCCCceeec--eEeec----ccCCCCCCc
Q psy1204 29 YVLCKDCHKESKVL--YHIIG----LKCEHCGSY 56 (71)
Q Consensus 29 ~i~CndC~~~s~v~--~h~~g----~kCp~C~Sy 56 (71)
-+.|..|+..|=.. ..||. ..||.|+..
T Consensus 28 g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~ 61 (74)
T 2ct0_A 28 GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 61 (74)
T ss_dssp SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSC
T ss_pred CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCc
Confidence 45788888777431 22221 369999854
No 159
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=29.14 E-value=25 Score=16.62 Aligned_cols=14 Identities=29% Similarity=0.320 Sum_probs=11.1
Q ss_pred EEcCCCCCceeece
Q psy1204 30 VLCKDCHKESKVLY 43 (71)
Q Consensus 30 i~CndC~~~s~v~~ 43 (71)
..|..|++.|....
T Consensus 8 ~~C~~C~k~F~~~~ 21 (48)
T 3iuf_A 8 YACDICGKRYKNRP 21 (48)
T ss_dssp EECTTTCCEESSHH
T ss_pred EECCCcCcccCCHH
Confidence 67999999987544
No 160
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=29.12 E-value=15 Score=17.40 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=11.4
Q ss_pred eEEcCCCCCceeece
Q psy1204 29 YVLCKDCHKESKVLY 43 (71)
Q Consensus 29 ~i~CndC~~~s~v~~ 43 (71)
-..|+.|++.|....
T Consensus 8 p~~C~~CgK~F~~~s 22 (36)
T 1fv5_A 8 RFMCLPCGIAFSSPS 22 (36)
T ss_dssp CCEETTTTEECSCHH
T ss_pred CeECCCCCCccCCHh
Confidence 357999999987543
No 161
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=28.95 E-value=22 Score=18.42 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=10.5
Q ss_pred ccCCCCCCcceeee
Q psy1204 48 LKCEHCGSYNTCRI 61 (71)
Q Consensus 48 ~kCp~C~Synt~ii 61 (71)
.+||.|++.+....
T Consensus 10 ~~Cp~Cg~~~a~f~ 23 (50)
T 1tfi_A 10 FTCGKCKKKNCTYT 23 (50)
T ss_dssp SCCSSSCSSCEEEE
T ss_pred cCCCCCCCCEEEEE
Confidence 38999998777543
No 162
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=28.84 E-value=23 Score=19.93 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=6.7
Q ss_pred ceeeEEcCCCCC
Q psy1204 26 VILYVLCKDCHK 37 (71)
Q Consensus 26 ~~v~i~CndC~~ 37 (71)
-.+..+|.+|+.
T Consensus 14 ge~~Y~C~~C~~ 25 (75)
T 3ny3_A 14 GEPTYSCRDCAV 25 (75)
T ss_dssp TCEEEEETTTBS
T ss_pred CCEEEECccCCC
Confidence 345566666653
No 163
>2gag_D Heterotetrameric sarcosine oxidase delta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_D* 1x31_D* 1vrq_D* 3ad7_D* 3ad8_D* 3ad9_D* 3ada_D*
Probab=28.46 E-value=20 Score=21.57 Aligned_cols=20 Identities=15% Similarity=0.486 Sum_probs=15.6
Q ss_pred eeEEcCCCCCceeeceEeec
Q psy1204 28 LYVLCKDCHKESKVLYHIIG 47 (71)
Q Consensus 28 v~i~CndC~~~s~v~~h~~g 47 (71)
..|.|.-||......|++.|
T Consensus 2 m~I~CP~CG~R~e~EF~ygG 21 (99)
T 2gag_D 2 MLIDCPNCGPRNENEFKYGG 21 (99)
T ss_dssp CEEEETTTEEEEGGGSEEEE
T ss_pred CEecCCCCCCcchhhEecCc
Confidence 56889999977777777765
No 164
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=28.43 E-value=26 Score=21.60 Aligned_cols=25 Identities=20% Similarity=0.530 Sum_probs=16.1
Q ss_pred EEcCCCCCceeece----EeecccCCCCC
Q psy1204 30 VLCKDCHKESKVLY----HIIGLKCEHCG 54 (71)
Q Consensus 30 i~CndC~~~s~v~~----h~~g~kCp~C~ 54 (71)
-+|..||..-.+.. ......|+.|+
T Consensus 4 ~~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 4 KFCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CBCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred ccCchhCCccccccccCCCCcceECCCCC
Confidence 37999998876532 11112789998
No 165
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=28.42 E-value=26 Score=19.90 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=14.9
Q ss_pred eeEEcCCCCCceeeceEeecccCCCCCC
Q psy1204 28 LYVLCKDCHKESKVLYHIIGLKCEHCGS 55 (71)
Q Consensus 28 v~i~CndC~~~s~v~~h~~g~kCp~C~S 55 (71)
..+.|..|++.-.+- ..+ ||..|-.
T Consensus 20 ~~~~Cd~C~~~pI~G-~Ry--kC~~C~d 44 (82)
T 2fc7_A 20 VGFKCDNCGIEPIQG-VRW--HCQDCPP 44 (82)
T ss_dssp SSCCCSSSCCSSEES-CEE--EESSSCS
T ss_pred CcCCCCCCCCCccee-ceE--ECCcCCC
Confidence 356899998643322 233 6666655
No 166
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=28.22 E-value=28 Score=15.26 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=10.2
Q ss_pred EEcCCCCCceeec
Q psy1204 30 VLCKDCHKESKVL 42 (71)
Q Consensus 30 i~CndC~~~s~v~ 42 (71)
..|..|++.|...
T Consensus 7 ~~C~~C~k~f~~~ 19 (39)
T 1njq_A 7 YTCSFCKREFRSA 19 (39)
T ss_dssp EECTTTCCEESSH
T ss_pred eECCCCCcccCCH
Confidence 6799999988643
No 167
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=28.04 E-value=38 Score=23.53 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=9.8
Q ss_pred eeeEEcCCCCCcee
Q psy1204 27 ILYVLCKDCHKESK 40 (71)
Q Consensus 27 ~v~i~CndC~~~s~ 40 (71)
...+.|..|++.-.
T Consensus 266 ~~~~~C~~C~~~~~ 279 (309)
T 1pqv_S 266 TDRFTCGKCKEKKV 279 (309)
T ss_pred cccccCCCCCCCee
Confidence 34678999996543
No 168
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=27.78 E-value=19 Score=25.06 Aligned_cols=25 Identities=24% Similarity=0.622 Sum_probs=17.1
Q ss_pred eEEcCCCCCceeeceEeecccCCCCC
Q psy1204 29 YVLCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 29 ~i~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
.-.|.-|+..+..-+ .-|++|..||
T Consensus 357 ~t~C~~C~~~~~g~~-~qg~~C~~C~ 381 (406)
T 2vrw_B 357 TTSCKACQMLLRGTF-YQGYRCYRCR 381 (406)
T ss_dssp CCBCTTTCCBCCSSS-SCEEEETTTC
T ss_pred CCCCccccchhceeC-CCCCCCCCCc
Confidence 468999998775332 3445888875
No 169
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.72 E-value=28 Score=15.43 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=10.7
Q ss_pred eEEcCCCCCceeec
Q psy1204 29 YVLCKDCHKESKVL 42 (71)
Q Consensus 29 ~i~CndC~~~s~v~ 42 (71)
...|..|++.|...
T Consensus 11 ~~~C~~C~k~f~~~ 24 (42)
T 2en2_A 11 PYKCETCGARFVQV 24 (42)
T ss_dssp SEECTTTCCEESSH
T ss_pred CEeCCCcChhhCCH
Confidence 36799999988643
No 170
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=27.46 E-value=27 Score=15.42 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=10.8
Q ss_pred eEEcCCCCCceeec
Q psy1204 29 YVLCKDCHKESKVL 42 (71)
Q Consensus 29 ~i~CndC~~~s~v~ 42 (71)
...|..|++.|...
T Consensus 11 ~~~C~~C~k~f~~~ 24 (42)
T 2epc_A 11 PYLCGQCGKSFTQR 24 (42)
T ss_dssp CEECSSSCCEESSH
T ss_pred CeECCCCCcccCCH
Confidence 36799999988643
No 171
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.36 E-value=27 Score=15.81 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=10.9
Q ss_pred eEEcCCCCCceeec
Q psy1204 29 YVLCKDCHKESKVL 42 (71)
Q Consensus 29 ~i~CndC~~~s~v~ 42 (71)
...|..|++.|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (44)
T 2epv_A 12 PYECNECGKAFIWK 25 (44)
T ss_dssp SEECSSSCCEESSH
T ss_pred CeECCCCCcccCch
Confidence 36799999988653
No 172
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.32 E-value=28 Score=15.39 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=10.9
Q ss_pred eEEcCCCCCceeec
Q psy1204 29 YVLCKDCHKESKVL 42 (71)
Q Consensus 29 ~i~CndC~~~s~v~ 42 (71)
...|..|++.|...
T Consensus 10 ~~~C~~C~k~f~~~ 23 (41)
T 2ept_A 10 VYECQECGKSFRQK 23 (41)
T ss_dssp CEECSSSCCEESSH
T ss_pred CeECCCCCCCcCCH
Confidence 36799999988653
No 173
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.23 E-value=29 Score=15.50 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=10.9
Q ss_pred eEEcCCCCCceeec
Q psy1204 29 YVLCKDCHKESKVL 42 (71)
Q Consensus 29 ~i~CndC~~~s~v~ 42 (71)
...|..|++.|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (44)
T 2eof_A 12 PYECNECQKAFNTK 25 (44)
T ss_dssp SEECTTTCCEESCH
T ss_pred CeECCCCCcccCCH
Confidence 36799999988653
No 174
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.08 E-value=31 Score=18.34 Aligned_cols=12 Identities=25% Similarity=0.742 Sum_probs=8.3
Q ss_pred eEEcCCCCCcee
Q psy1204 29 YVLCKDCHKESK 40 (71)
Q Consensus 29 ~i~CndC~~~s~ 40 (71)
.+.|..|++.+.
T Consensus 17 ~~~C~~C~~~~~ 28 (75)
T 2d9k_A 17 LAVCQHCDLELS 28 (75)
T ss_dssp CEECSSSCCEEC
T ss_pred ccCCcccChHhh
Confidence 467777777664
No 175
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=26.99 E-value=15 Score=19.41 Aligned_cols=11 Identities=18% Similarity=0.606 Sum_probs=5.9
Q ss_pred EEcCCCCCcee
Q psy1204 30 VLCKDCHKESK 40 (71)
Q Consensus 30 i~CndC~~~s~ 40 (71)
..|..|++.|.
T Consensus 4 ~~C~~C~k~f~ 14 (88)
T 1llm_C 4 FQCRICMRNFS 14 (88)
T ss_dssp EECTTTCCEES
T ss_pred CcCCCCCCccC
Confidence 34555665553
No 176
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=26.96 E-value=28 Score=22.88 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=19.4
Q ss_pred eEEcCCCCCceeeceEeecccCCCCCC
Q psy1204 29 YVLCKDCHKESKVLYHIIGLKCEHCGS 55 (71)
Q Consensus 29 ~i~CndC~~~s~v~~h~~g~kCp~C~S 55 (71)
.-.|..|+...-...|+-.+.|-+|+-
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~~CGkC~~ 139 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRHYCGKCHL 139 (189)
T ss_dssp SEECSTTCSSCEEEECSSCEEETTTCC
T ss_pred cccCCccCCCccccCccCCCccCCcee
Confidence 478999996643347777778888854
No 177
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=26.53 E-value=44 Score=21.57 Aligned_cols=50 Identities=16% Similarity=0.038 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCCCHhhh--------cceeeEEcCCCCCceee---ceEee--cccCCCCCCc
Q psy1204 4 TPLWRQMDEEIASTPMPEEYK--------NVILYVLCKDCHKESKV---LYHII--GLKCEHCGSY 56 (71)
Q Consensus 4 ~~~~~~lD~~i~~~pmP~~y~--------~~~v~i~CndC~~~s~v---~~h~~--g~kCp~C~Sy 56 (71)
...|++.+.......+|.+|. .-||.+ .||.+|.- ..|+. +..||.|+..
T Consensus 88 ~~l~~~~~~~~~~~~ip~~f~CPI~~elm~DPV~~---~~Ghtfer~~I~~~l~~~~~tcP~t~~~ 150 (179)
T 2f42_A 88 DELFSQVDEKRKKREIPDYLCGKISFELMREPCIT---PSGITYDRKDIEEHLQRVGHFDPVTRSP 150 (179)
T ss_dssp HHHHHHHHHGGGCCCCCGGGBCTTTCSBCSSEEEC---TTSCEEEHHHHHHHHHHTCSBCTTTCCB
T ss_pred HHHHHHHhhhccccCCcHhhcccCccccCCCCeEC---CCCCEECHHHHHHHHHhCCCCCCCCcCC
Confidence 345666666555677787764 125544 57887752 22221 3359999864
No 178
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.47 E-value=28 Score=15.86 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=10.5
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2em4_A 12 PYECIECGKAFKT 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CcCCCCCCCccCC
Confidence 3679999998864
No 179
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=26.44 E-value=27 Score=22.17 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=22.0
Q ss_pred CHhhhcceeeEEcCCCCCceeece--------EeecccCCCCCCc
Q psy1204 20 PEEYKNVILYVLCKDCHKESKVLY--------HIIGLKCEHCGSY 56 (71)
Q Consensus 20 P~~y~~~~v~i~CndC~~~s~v~~--------h~~g~kCp~C~Sy 56 (71)
.+.+....+.+.|.+|+....... ... ..||.||+.
T Consensus 69 ~e~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~-~~c~~~g~~ 112 (166)
T 3ir9_A 69 SEDLRAERVTTKCSVCGYENKWTRRWKPGEPAPAA-GNCPKCGSS 112 (166)
T ss_dssp ETTCCCEEEEEEESSSSCEEEEEECCCC--CCCCC-CBCTTTCCB
T ss_pred ecCccceEEEEECCCCCceeEEEeecChhhccccc-ccccccCcc
Confidence 455555567899999985432110 111 269999985
No 180
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.24 E-value=29 Score=15.84 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=10.6
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2ytp_A 12 HYECSECGKAFAR 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCcCCcccCC
Confidence 4679999998864
No 181
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=26.15 E-value=31 Score=20.43 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=4.7
Q ss_pred eEEcCCCCCc
Q psy1204 29 YVLCKDCHKE 38 (71)
Q Consensus 29 ~i~CndC~~~ 38 (71)
...|..|++.
T Consensus 36 ky~CpfCgk~ 45 (92)
T 3izc_m 36 RYDCSFCGKK 45 (92)
T ss_dssp CCCCSSSCSS
T ss_pred CCcCCCCCCc
Confidence 3445555543
No 182
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=26.12 E-value=26 Score=23.48 Aligned_cols=9 Identities=33% Similarity=1.029 Sum_probs=5.5
Q ss_pred cCCCCCCcc
Q psy1204 49 KCEHCGSYN 57 (71)
Q Consensus 49 kCp~C~Syn 57 (71)
+||.|++..
T Consensus 23 ~CPECGs~~ 31 (197)
T 3k1f_M 23 TCPECKVYP 31 (197)
T ss_dssp CCTTTCCSS
T ss_pred ECcCCCCcC
Confidence 666666643
No 183
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.98 E-value=32 Score=15.45 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=11.0
Q ss_pred eEEcCCCCCceeec
Q psy1204 29 YVLCKDCHKESKVL 42 (71)
Q Consensus 29 ~i~CndC~~~s~v~ 42 (71)
...|..|++.|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (44)
T 2emb_A 12 RYECSKCQATFNLR 25 (44)
T ss_dssp SEECTTTCCEESCH
T ss_pred CeECCCCCCccCCH
Confidence 36799999988753
No 184
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.82 E-value=19 Score=15.47 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=10.0
Q ss_pred EEcCCCCCceeec
Q psy1204 30 VLCKDCHKESKVL 42 (71)
Q Consensus 30 i~CndC~~~s~v~ 42 (71)
..|..|++.|...
T Consensus 10 ~~C~~C~k~f~~~ 22 (37)
T 2elo_A 10 YSCPVCEKSFSED 22 (37)
T ss_dssp CEETTTTEECSSH
T ss_pred cCCCCCCCccCCH
Confidence 5799999887643
No 185
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=25.77 E-value=33 Score=18.54 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=14.2
Q ss_pred EcCCCCCceeeceEeecccCCCCCCc
Q psy1204 31 LCKDCHKESKVLYHIIGLKCEHCGSY 56 (71)
Q Consensus 31 ~CndC~~~s~v~~h~~g~kCp~C~Sy 56 (71)
.|..|.+.+.... .+ .|+.|++.
T Consensus 17 ~C~~C~~~~~~~~-~y--~C~~C~~~ 39 (59)
T 1z60_A 17 FCYGCQGELKDQH-VY--VCAVCQNV 39 (59)
T ss_dssp EETTTTEECTTSE-EE--CCTTTTCC
T ss_pred cccccCcccCCCc-cE--ECCccCcC
Confidence 4888877764322 23 78887653
No 186
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.66 E-value=32 Score=15.56 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=10.5
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eow_A 12 PYKCNECGKAFRA 24 (46)
T ss_dssp CEECTTSCCEESS
T ss_pred CeeccccCChhcC
Confidence 3679999998864
No 187
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.88 E-value=32 Score=15.65 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=10.5
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eoy_A 12 CFKCNKCEKTFSC 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CEECcCCCCcCCC
Confidence 3679999998864
No 188
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=24.57 E-value=30 Score=22.00 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=18.7
Q ss_pred EEcCCCCCceeeceEeecccCCCCCCcce
Q psy1204 30 VLCKDCHKESKVLYHIIGLKCEHCGSYNT 58 (71)
Q Consensus 30 i~CndC~~~s~v~~h~~g~kCp~C~Synt 58 (71)
..|.-|+.........+ .|+.|.++..
T Consensus 3 ~~Cp~C~~~~~~~~~~~--~C~~~~~~~~ 29 (269)
T 1p91_A 3 FSCPLCHQPLSREKNSY--ICPQRHQFDM 29 (269)
T ss_dssp BBCTTTCCBCEEETTEE--ECTTCCEEEB
T ss_pred ccCCCCCccceeCCCEE--ECCCCCcCCc
Confidence 45999987655544444 8999987764
No 189
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.55 E-value=32 Score=15.46 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=10.6
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 10 ~~~C~~C~k~f~~ 22 (44)
T 2emx_A 10 PFGCSCCEKAFSS 22 (44)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCCCcccCC
Confidence 4789999998864
No 190
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.55 E-value=33 Score=15.55 Aligned_cols=13 Identities=23% Similarity=0.439 Sum_probs=10.4
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2en3_A 12 PFQCKECGMNFSW 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeeCcccChhhCC
Confidence 3679999998864
No 191
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=24.54 E-value=32 Score=20.84 Aligned_cols=12 Identities=25% Similarity=0.191 Sum_probs=6.7
Q ss_pred eeeEEcCCCCCc
Q psy1204 27 ILYVLCKDCHKE 38 (71)
Q Consensus 27 ~v~i~CndC~~~ 38 (71)
.....|..|++.
T Consensus 34 ~aky~CpfCgk~ 45 (103)
T 4a17_Y 34 HAKYGCPFCGKV 45 (103)
T ss_dssp HSCEECTTTCCE
T ss_pred hcCCCCCCCCCc
Confidence 345556666654
No 192
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=24.54 E-value=31 Score=19.79 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=6.9
Q ss_pred ceeeEEcCCCCC
Q psy1204 26 VILYVLCKDCHK 37 (71)
Q Consensus 26 ~~v~i~CndC~~ 37 (71)
.....+|.+|+.
T Consensus 18 ge~~Y~C~~C~~ 29 (82)
T 3nis_A 18 GEPLYRCHECGC 29 (82)
T ss_dssp TCEEEEETTTBS
T ss_pred CCEEEEeeccCC
Confidence 345566666653
No 193
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=24.43 E-value=32 Score=15.65 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=10.5
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2emj_A 12 PFECAECGKSFSI 24 (46)
T ss_dssp SEECSSSSCEESS
T ss_pred CEECCCCCcccCC
Confidence 3679999998864
No 194
>1jbi_A Cochlin, COCH-5B2; alpha-beta protein, structural genomics, unknown function; NMR {Homo sapiens} SCOP: d.209.1.1
Probab=24.27 E-value=51 Score=19.38 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=19.6
Q ss_pred eeeEEcCCCCCceeeceEeecccCC-CCCCcceeee
Q psy1204 27 ILYVLCKDCHKESKVLYHIIGLKCE-HCGSYNTCRI 61 (71)
Q Consensus 27 ~v~i~CndC~~~s~v~~h~~g~kCp-~C~Synt~ii 61 (71)
|+.|-|.+=...+.-....+ +|| .|.+....|.
T Consensus 3 p~~i~C~~~~~~~~~~~~~~--~CPa~C~~~~~~V~ 36 (100)
T 1jbi_A 3 PIAITCFTRGLDIRKEKADV--LCPGGCPLEEFSVY 36 (100)
T ss_dssp CEECCSCCBTTTCCSSEEEE--EECSCCCTTSCCEE
T ss_pred CeEeeccCcHHHcCCCcEEE--EcCCCCCCCCCeEE
Confidence 45555655444443334455 998 7988776554
No 195
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.27 E-value=34 Score=15.52 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=10.6
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2emi_A 12 HYECSECGKAFIQ 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CCCCCCCCcccCC
Confidence 4789999998864
No 196
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.22 E-value=34 Score=15.45 Aligned_cols=14 Identities=21% Similarity=0.484 Sum_probs=10.9
Q ss_pred eEEcCCCCCceeec
Q psy1204 29 YVLCKDCHKESKVL 42 (71)
Q Consensus 29 ~i~CndC~~~s~v~ 42 (71)
...|..|++.|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ytf_A 12 PFECSECQKAFNTK 25 (46)
T ss_dssp SEECSSSCCEESSH
T ss_pred CcCCCCCCcccCCH
Confidence 36799999988643
No 197
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.18 E-value=33 Score=15.54 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=10.6
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ep3_A 12 PYRCAECGKAFTD 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCCchhCC
Confidence 4679999998864
No 198
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.10 E-value=26 Score=15.62 Aligned_cols=13 Identities=23% Similarity=0.462 Sum_probs=10.3
Q ss_pred EEcCCCCCceeec
Q psy1204 30 VLCKDCHKESKVL 42 (71)
Q Consensus 30 i~CndC~~~s~v~ 42 (71)
..|..|++.|...
T Consensus 12 ~~C~~C~k~f~~~ 24 (42)
T 2eos_A 12 YPCEICGTRFRHL 24 (42)
T ss_dssp BCCSSSCCCBSSH
T ss_pred EECCCCCCccCCH
Confidence 5699999988753
No 199
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=24.02 E-value=86 Score=16.29 Aligned_cols=29 Identities=21% Similarity=0.495 Sum_probs=21.2
Q ss_pred eeEEcCCCCCceeeceEeecccCCCCCCcceee
Q psy1204 28 LYVLCKDCHKESKVLYHIIGLKCEHCGSYNTCR 60 (71)
Q Consensus 28 v~i~CndC~~~s~v~~h~~g~kCp~C~Synt~i 60 (71)
....|..|+-...+.. ..|+.|......+
T Consensus 8 ~~~~C~~C~GsG~~~~----~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 8 LEVACPKCERAGEIEG----TPCPACSGKGVIL 36 (53)
T ss_dssp HEEECTTTTTSSEETT----EECTTTTTSSEEE
T ss_pred ccccCCCCcceeccCC----CCCccCCCCccEE
Confidence 3568999998777643 4899998766544
No 200
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...
Probab=23.95 E-value=32 Score=20.42 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=9.2
Q ss_pred ccCCCCCCccee
Q psy1204 48 LKCEHCGSYNTC 59 (71)
Q Consensus 48 ~kCp~C~Synt~ 59 (71)
..||.||++-.-
T Consensus 80 ~RC~eCG~~fkL 91 (98)
T 1v54_F 80 QRCPSCGTHYKL 91 (98)
T ss_dssp EECTTTCCEEEE
T ss_pred eECCCCCeEEEE
Confidence 499999987543
No 201
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.94 E-value=35 Score=15.42 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=10.4
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2epw_A 12 PCKCTECGKAFCW 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeeCCCCCCccCC
Confidence 3679999998864
No 202
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.83 E-value=34 Score=15.56 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=10.5
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yto_A 12 PYKCSDCGKAFTR 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CEECcccCCccCC
Confidence 4689999998864
No 203
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=23.82 E-value=42 Score=16.63 Aligned_cols=21 Identities=33% Similarity=0.991 Sum_probs=14.5
Q ss_pred eEEcCCCCCceeeceEeecccCCCCC
Q psy1204 29 YVLCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 29 ~i~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
.-+|.-|++.- +-|++|..|+
T Consensus 14 pt~C~~C~~~l-----~qG~~C~~C~ 34 (52)
T 1faq_A 14 LAFCDICQKFL-----LNGFRCQTCG 34 (52)
T ss_dssp CEECTTSSSEE-----CSEEECTTTT
T ss_pred CcCCCCccccc-----ccCCEeCCCC
Confidence 46788887632 2566998884
No 204
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.64 E-value=35 Score=15.38 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=10.9
Q ss_pred eEEcCCCCCceeec
Q psy1204 29 YVLCKDCHKESKVL 42 (71)
Q Consensus 29 ~i~CndC~~~s~v~ 42 (71)
...|..|++.|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2yts_A 12 PYICNECGKSFIQK 25 (46)
T ss_dssp SEECSSSCCEESSH
T ss_pred CEECCCCChhhCCh
Confidence 36899999988643
No 205
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=23.61 E-value=29 Score=13.60 Aligned_cols=12 Identities=17% Similarity=0.642 Sum_probs=8.9
Q ss_pred EEcC--CCCCceee
Q psy1204 30 VLCK--DCHKESKV 41 (71)
Q Consensus 30 i~Cn--dC~~~s~v 41 (71)
..|. .|++.|..
T Consensus 3 ~~C~~~~C~k~f~~ 16 (29)
T 2ab3_A 3 YVCHFENCGRSFND 16 (29)
T ss_dssp EEECSTTTCEEESS
T ss_pred CCCcCCcCcCccCC
Confidence 4688 89987754
No 206
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.61 E-value=35 Score=15.47 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=10.9
Q ss_pred eEEcCCCCCceeec
Q psy1204 29 YVLCKDCHKESKVL 42 (71)
Q Consensus 29 ~i~CndC~~~s~v~ 42 (71)
...|..|++.|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2em3_A 12 PYECKVCSKAFTQK 25 (46)
T ss_dssp SEECSSSCCEESSH
T ss_pred CeECCCCCcccCCH
Confidence 36799999988643
No 207
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.61 E-value=35 Score=15.41 Aligned_cols=13 Identities=23% Similarity=0.393 Sum_probs=10.6
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yrj_A 12 PYRCGECGKAFAQ 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCccCC
Confidence 4679999998864
No 208
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.57 E-value=35 Score=15.31 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=10.4
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (44)
T 2yu5_A 12 PFKCSKCDRVFTQ 24 (44)
T ss_dssp SEECSSSSCEESS
T ss_pred CeECCCCCchhCC
Confidence 3679999998864
No 209
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.54 E-value=35 Score=15.46 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=10.6
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2em7_A 12 PYKCEECGKGFIC 24 (46)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCccchhCC
Confidence 4689999998864
No 210
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.51 E-value=38 Score=15.28 Aligned_cols=13 Identities=23% Similarity=0.375 Sum_probs=10.5
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eor_A 12 PYNCEECGKAFIH 24 (46)
T ss_dssp SEECTTTCCEESS
T ss_pred CccCCCCCCCcCC
Confidence 3679999998864
No 211
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=23.49 E-value=37 Score=16.22 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=10.9
Q ss_pred eEEcCCCCCceeec
Q psy1204 29 YVLCKDCHKESKVL 42 (71)
Q Consensus 29 ~i~CndC~~~s~v~ 42 (71)
...|..|++.|...
T Consensus 24 ~~~C~~C~k~f~~~ 37 (54)
T 1yui_A 24 PATCPICYAVIRQS 37 (54)
T ss_dssp CEECTTTCCEESSH
T ss_pred CccCCCCCcccCCH
Confidence 46799999988643
No 212
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=23.45 E-value=36 Score=21.04 Aligned_cols=26 Identities=19% Similarity=0.622 Sum_probs=13.9
Q ss_pred eEEcCCCCCceeece----EeecccCCCCC
Q psy1204 29 YVLCKDCHKESKVLY----HIIGLKCEHCG 54 (71)
Q Consensus 29 ~i~CndC~~~s~v~~----h~~g~kCp~C~ 54 (71)
.-||..|+.-=.+.. ..+...|+.|+
T Consensus 24 ~~FCPeCgNmL~pked~~~~~l~~~CrtCg 53 (133)
T 3qt1_I 24 FRFCRDCNNMLYPREDKENNRLLFECRTCS 53 (133)
T ss_dssp CCBCTTTCCBCBCCBCTTTCCBCCBCSSSC
T ss_pred CeeCCCCCCEeeECccCCCceeEEECCCCC
Confidence 456777775443322 12223777774
No 213
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=23.15 E-value=32 Score=22.24 Aligned_cols=28 Identities=21% Similarity=0.384 Sum_probs=16.3
Q ss_pred eeeEEcCCCCCcee-eceEeecccCCCCCCc
Q psy1204 27 ILYVLCKDCHKESK-VLYHIIGLKCEHCGSY 56 (71)
Q Consensus 27 ~v~i~CndC~~~s~-v~~h~~g~kCp~C~Sy 56 (71)
..-..|..|+++-. ...-.+ .|++|+..
T Consensus 40 ~~Y~ACp~CnKKV~~~~~g~~--~CekC~~~ 68 (172)
T 3u50_C 40 LYYYRCTCQGKSVLKYHGDSF--FCESCQQF 68 (172)
T ss_dssp CEEEECTTSCCCEEEETTTEE--EETTTTEE
T ss_pred EEehhchhhCCEeeeCCCCeE--ECCCCCCC
Confidence 35566888887654 111123 68888653
No 214
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=23.07 E-value=37 Score=14.95 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=10.7
Q ss_pred eEEcCCCCCceeec
Q psy1204 29 YVLCKDCHKESKVL 42 (71)
Q Consensus 29 ~i~CndC~~~s~v~ 42 (71)
...|..|++.|...
T Consensus 10 ~~~C~~C~k~f~~~ 23 (42)
T 2el5_A 10 PYECSECGKAFNRK 23 (42)
T ss_dssp SEECSSSCCEESSH
T ss_pred CccCCCcChhhCCH
Confidence 36799999988643
No 215
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.99 E-value=36 Score=15.46 Aligned_cols=13 Identities=23% Similarity=0.462 Sum_probs=10.6
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2emf_A 12 HFECTECGKAFTR 24 (46)
T ss_dssp CEECSSSCCEESC
T ss_pred CeECCCCCchhCC
Confidence 4679999999864
No 216
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.97 E-value=29 Score=15.31 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=10.3
Q ss_pred EEcCCCCCceeec
Q psy1204 30 VLCKDCHKESKVL 42 (71)
Q Consensus 30 i~CndC~~~s~v~ 42 (71)
..|..|++.|...
T Consensus 12 ~~C~~C~k~f~~~ 24 (42)
T 2ytb_A 12 YRCDQCGKAFSQK 24 (42)
T ss_dssp BCCTTTTCCBSSH
T ss_pred eeCCCccchhCCH
Confidence 5699999988654
No 217
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.96 E-value=37 Score=15.42 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=10.6
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2eoo_A 12 PYGCNECGKNFGR 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CEEccccCcccCC
Confidence 3679999998864
No 218
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.72 E-value=40 Score=15.25 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=10.6
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yso_A 12 SHQCRECGEIFFQ 24 (46)
T ss_dssp CEECTTTCCEESS
T ss_pred CEEccccChhhCC
Confidence 3679999998864
No 219
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.71 E-value=29 Score=15.75 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=10.9
Q ss_pred eEEcCCCCCceeec
Q psy1204 29 YVLCKDCHKESKVL 42 (71)
Q Consensus 29 ~i~CndC~~~s~v~ 42 (71)
...|..|++.|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (45)
T 2epu_A 12 PFECTHCGKSFRAK 25 (45)
T ss_dssp SEEETTTTEEESSH
T ss_pred CccCCCCCCccCCh
Confidence 36799999988653
No 220
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=22.63 E-value=18 Score=28.24 Aligned_cols=15 Identities=33% Similarity=0.758 Sum_probs=12.0
Q ss_pred ccCCCCCCcceeeec
Q psy1204 48 LKCEHCGSYNTCRIK 62 (71)
Q Consensus 48 ~kCp~C~Synt~ii~ 62 (71)
++|=.||+-|+-+++
T Consensus 67 ~ec~~c~~~n~f~lg 81 (800)
T 2wjy_A 67 LECYNCGCRNVFLLG 81 (800)
T ss_dssp CCCTTTCCCCTTTCE
T ss_pred EEEeccCCCceeeee
Confidence 489899999987664
No 221
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=22.28 E-value=17 Score=19.26 Aligned_cols=42 Identities=24% Similarity=0.396 Sum_probs=24.4
Q ss_pred eEEcCCCCCceeec----eEee------cccCCCCCCccee---------eecCCCCCCCC
Q psy1204 29 YVLCKDCHKESKVL----YHII------GLKCEHCGSYNTC---------RIKKPNGQESG 70 (71)
Q Consensus 29 ~i~CndC~~~s~v~----~h~~------g~kCp~C~Synt~---------ii~g~~~~~~~ 70 (71)
...|..|++.|... .|.. -.+|+.|+-.-.. +-.|+.+|.+|
T Consensus 36 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~p~~G 96 (96)
T 2dmd_A 36 PYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSSG 96 (96)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHTTCCSCCCCCCC
T ss_pred CEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence 46799999888531 1210 1289999754332 22466666665
No 222
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.24 E-value=32 Score=15.16 Aligned_cols=12 Identities=17% Similarity=0.506 Sum_probs=9.8
Q ss_pred EEcCCCCCceee
Q psy1204 30 VLCKDCHKESKV 41 (71)
Q Consensus 30 i~CndC~~~s~v 41 (71)
..|..|++.|..
T Consensus 11 ~~C~~C~k~f~~ 22 (42)
T 2yte_A 11 YSCAECKETFSD 22 (42)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCCccCC
Confidence 569999998864
No 223
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.17 E-value=40 Score=15.21 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=10.5
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2emh_A 12 PYICTVCGKAFTD 24 (46)
T ss_dssp SEECTTTCCEESS
T ss_pred CcCCCCCCchhCC
Confidence 3679999998864
No 224
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.11 E-value=42 Score=15.17 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=10.6
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2eq0_A 12 PYKCHECGKVFRR 24 (46)
T ss_dssp CEECTTTCCEESS
T ss_pred CeECCCCCchhCC
Confidence 4789999998864
No 225
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.00 E-value=30 Score=15.73 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=10.4
Q ss_pred EEcCCCCCceeec
Q psy1204 30 VLCKDCHKESKVL 42 (71)
Q Consensus 30 i~CndC~~~s~v~ 42 (71)
..|..|++.|...
T Consensus 13 ~~C~~C~k~F~~~ 25 (46)
T 2enf_A 13 YKCNECGKVFTQN 25 (46)
T ss_dssp CBCSSSCCBCSSH
T ss_pred eECCCCCcccCCH
Confidence 5799999988643
No 226
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.96 E-value=31 Score=15.51 Aligned_cols=14 Identities=21% Similarity=0.486 Sum_probs=10.8
Q ss_pred eEEcCCCCCceeec
Q psy1204 29 YVLCKDCHKESKVL 42 (71)
Q Consensus 29 ~i~CndC~~~s~v~ 42 (71)
...|..|++.|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (44)
T 2eox_A 12 SYNCNECGKAFTRI 25 (44)
T ss_dssp CEEETTTTEEESSS
T ss_pred CeECcccCcccCCH
Confidence 36799999988653
No 227
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.92 E-value=40 Score=15.23 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=10.5
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2enc_A 12 PFKCEECGKGFYT 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CcCCCCCCCcCCC
Confidence 4689999998864
No 228
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.83 E-value=42 Score=15.08 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=10.4
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2en8_A 12 SHTCDECGKNFCY 24 (46)
T ss_dssp SEECTTTCCEESS
T ss_pred CeECCCcCcccCC
Confidence 3679999998864
No 229
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=21.76 E-value=41 Score=15.15 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=10.5
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2em9_A 12 PYNCKECGKSFRW 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCccccccCC
Confidence 4679999998864
No 230
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.74 E-value=41 Score=15.27 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=10.5
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2em2_A 12 PFKCKECGKAFRQ 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CEECCcCCchhCC
Confidence 4679999998864
No 231
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.63 E-value=41 Score=15.19 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=10.4
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yu8_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCcCCchhCC
Confidence 3689999998864
No 232
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.55 E-value=41 Score=15.18 Aligned_cols=13 Identities=23% Similarity=0.462 Sum_probs=10.4
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ene_A 12 PYKCNECGKVFRH 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCCchhCC
Confidence 3679999998864
No 233
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=21.53 E-value=47 Score=21.07 Aligned_cols=24 Identities=29% Similarity=0.704 Sum_probs=16.3
Q ss_pred eeeEEcCCCCCceeeceEeecccCCCCCC
Q psy1204 27 ILYVLCKDCHKESKVLYHIIGLKCEHCGS 55 (71)
Q Consensus 27 ~v~i~CndC~~~s~v~~h~~g~kCp~C~S 55 (71)
...+.|..|+.+.++. ..|+.|+.
T Consensus 56 ~~~vlCg~C~~~q~~~-----~~C~~Cg~ 79 (143)
T 2dkt_A 56 VKEVQCINCEKLQHAQ-----QTCEDCST 79 (143)
T ss_dssp CCCEEESSSCCEECSC-----SBCSSSCC
T ss_pred cceeeecccCcccccc-----CcCCCCCc
Confidence 3478888888877664 26776654
No 234
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=21.49 E-value=41 Score=15.18 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=10.5
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ema_A 12 RYKCNECGKVFSR 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CcCCCCCcchhCC
Confidence 4679999998864
No 235
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.42 E-value=41 Score=15.26 Aligned_cols=13 Identities=31% Similarity=0.462 Sum_probs=10.6
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2em8_A 12 PYKCVECGKGYKR 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECcccCchhCC
Confidence 4789999998864
No 236
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=21.41 E-value=19 Score=29.10 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=21.7
Q ss_pred CCCHhhhcceeeEEcCCCCCceeeceEeecccCCCCCC
Q psy1204 18 PMPEEYKNVILYVLCKDCHKESKVLYHIIGLKCEHCGS 55 (71)
Q Consensus 18 pmP~~y~~~~v~i~CndC~~~s~v~~h~~g~kCp~C~S 55 (71)
++|..|.. .|+.||..-.....+.++.|..|+.
T Consensus 2 ~~~~~~~~-----~C~~Cg~~~~~~~l~~~l~c~~C~~ 34 (1104)
T 4ddu_A 2 AVNSKYHH-----SCINCGGLNTDERNERGLPCEVCLP 34 (1104)
T ss_dssp CCCCEETT-----CCTTTSSCEEHHHHTTTCCCTTTCC
T ss_pred CcchHhhh-----cCCCCcCcCchhHHhcCCCCcccCC
Confidence 45666654 7999998554433344558999965
No 237
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.41 E-value=41 Score=15.20 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=10.4
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ytk_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CEeCCcCCCccCC
Confidence 3679999998864
No 238
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.39 E-value=32 Score=15.30 Aligned_cols=13 Identities=23% Similarity=0.662 Sum_probs=10.2
Q ss_pred EEcCCCCCceeec
Q psy1204 30 VLCKDCHKESKVL 42 (71)
Q Consensus 30 i~CndC~~~s~v~ 42 (71)
..|..|++.|...
T Consensus 13 ~~C~~C~k~f~~~ 25 (44)
T 2en7_A 13 YVCNECGKAFRSK 25 (44)
T ss_dssp SCCTTTCCCCSSH
T ss_pred eECCCCCCccCCH
Confidence 5699999988653
No 239
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.30 E-value=32 Score=15.66 Aligned_cols=13 Identities=23% Similarity=0.352 Sum_probs=10.4
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eoz_A 12 PYSCNVCGKAFVL 24 (46)
T ss_dssp SEEETTTTEEESS
T ss_pred CeECcccChhhCC
Confidence 3679999998864
No 240
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=21.06 E-value=51 Score=17.26 Aligned_cols=6 Identities=50% Similarity=1.530 Sum_probs=3.3
Q ss_pred cCCCCC
Q psy1204 49 KCEHCG 54 (71)
Q Consensus 49 kCp~C~ 54 (71)
+|.+||
T Consensus 13 ~CSFCG 18 (51)
T 2ds5_A 13 YCSFCG 18 (51)
T ss_dssp BCTTTC
T ss_pred EecCCC
Confidence 455555
No 241
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.06 E-value=34 Score=15.53 Aligned_cols=13 Identities=23% Similarity=0.560 Sum_probs=10.4
Q ss_pred EEcCCCCCceeec
Q psy1204 30 VLCKDCHKESKVL 42 (71)
Q Consensus 30 i~CndC~~~s~v~ 42 (71)
..|..|++.|...
T Consensus 13 ~~C~~C~k~f~~~ 25 (46)
T 2emg_A 13 FICSECGKVFTHK 25 (46)
T ss_dssp CBCTTTCCBCSSH
T ss_pred EECCccCcccCCH
Confidence 5799999988643
No 242
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.81 E-value=43 Score=15.12 Aligned_cols=13 Identities=23% Similarity=0.669 Sum_probs=10.5
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ytj_A 12 PYICAECGKAFTI 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCChhhCC
Confidence 3689999998864
No 243
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.79 E-value=24 Score=19.26 Aligned_cols=12 Identities=33% Similarity=0.384 Sum_probs=8.6
Q ss_pred eEEcCCCCCcee
Q psy1204 29 YVLCKDCHKESK 40 (71)
Q Consensus 29 ~i~CndC~~~s~ 40 (71)
...|..|++.|.
T Consensus 37 ~~~C~~C~~~f~ 48 (110)
T 2csh_A 37 PYGCGVCGKKFK 48 (110)
T ss_dssp SEECTTTSCEES
T ss_pred CccCCCCCcccC
Confidence 367888887775
No 244
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.77 E-value=44 Score=15.08 Aligned_cols=13 Identities=31% Similarity=0.708 Sum_probs=10.5
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2emp_A 12 PYMCNECGKAFSV 24 (46)
T ss_dssp SEECSSSCCEESC
T ss_pred CeECCCCCchhCC
Confidence 3679999998864
No 245
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.67 E-value=44 Score=15.07 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=10.5
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2emy_A 12 PYECHECGKAFSR 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CcCCCCCCcccCc
Confidence 3679999998864
No 246
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.67 E-value=43 Score=15.11 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=10.4
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eml_A 12 PYECSVCGKAFSH 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeeCCCcCCccCC
Confidence 3679999998864
No 247
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.58 E-value=46 Score=15.01 Aligned_cols=13 Identities=23% Similarity=0.485 Sum_probs=10.6
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ytg_A 12 PFKCGECGKSYNQ 24 (46)
T ss_dssp SEECTTTCCEESS
T ss_pred CeECCCCCcccCC
Confidence 4789999998864
No 248
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=20.56 E-value=32 Score=16.01 Aligned_cols=8 Identities=25% Similarity=0.654 Sum_probs=6.2
Q ss_pred cCCCCCCc
Q psy1204 49 KCEHCGSY 56 (71)
Q Consensus 49 kCp~C~Sy 56 (71)
+||.|+.-
T Consensus 5 ~CpvCk~q 12 (28)
T 2jvx_A 5 CCPKCQYQ 12 (28)
T ss_dssp ECTTSSCE
T ss_pred cCcccccc
Confidence 89999753
No 249
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.51 E-value=45 Score=14.99 Aligned_cols=13 Identities=23% Similarity=0.462 Sum_probs=10.6
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eme_A 12 PYVCDYCGKAFGL 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCChhhCC
Confidence 3789999998864
No 250
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.44 E-value=45 Score=14.98 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=10.5
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2emm_A 12 PHKCNECGKSFIQ 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeeCCCCChhhCC
Confidence 3679999998864
No 251
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=20.38 E-value=27 Score=23.36 Aligned_cols=28 Identities=21% Similarity=0.568 Sum_probs=16.1
Q ss_pred eEEcCCCCCceeec--eEee----cccCCCCCCc
Q psy1204 29 YVLCKDCHKESKVL--YHII----GLKCEHCGSY 56 (71)
Q Consensus 29 ~i~CndC~~~s~v~--~h~~----g~kCp~C~Sy 56 (71)
-+.|..|+..+=.. .+++ ..+||.|+..
T Consensus 193 g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 193 GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 226 (238)
T ss_dssp CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCB
T ss_pred CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 56777777655321 1221 3488988764
No 252
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=20.38 E-value=33 Score=17.77 Aligned_cols=10 Identities=30% Similarity=0.843 Sum_probs=7.6
Q ss_pred EcCCCCCcee
Q psy1204 31 LCKDCHKESK 40 (71)
Q Consensus 31 ~CndC~~~s~ 40 (71)
.|++||+--.
T Consensus 19 vC~~CgkPi~ 28 (44)
T 2lo3_A 19 VCEKCGKPLA 28 (44)
T ss_dssp ECTTTCCEEE
T ss_pred hhcccCCcch
Confidence 5999998543
No 253
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=20.35 E-value=44 Score=15.02 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=10.5
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2el4_A 12 PYGCSQCAKTFSL 24 (46)
T ss_dssp SEECSSSSCEESS
T ss_pred ceECCCCCchhCC
Confidence 3679999998864
No 254
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=20.31 E-value=60 Score=17.25 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=14.1
Q ss_pred eEEcCCCCCceeeceEeecccCCCCC
Q psy1204 29 YVLCKDCHKESKVLYHIIGLKCEHCG 54 (71)
Q Consensus 29 ~i~CndC~~~s~v~~h~~g~kCp~C~ 54 (71)
-..|.-|++.-..- -.+.||..|+
T Consensus 19 ~~~C~~Cg~~i~~g--kq~~kC~dC~ 42 (61)
T 4b6d_A 19 PESCVPCGKRIKFG--KLSLKCRDCR 42 (61)
T ss_dssp CEECTTTCCEECTT--CEEEEESSSS
T ss_pred CcccccccCEEEEe--eEeeECCCCC
Confidence 36888887644211 1234888874
No 255
>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=20.19 E-value=43 Score=20.92 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=9.2
Q ss_pred ccCCCCCCccee
Q psy1204 48 LKCEHCGSYNTC 59 (71)
Q Consensus 48 ~kCp~C~Synt~ 59 (71)
+.||.||++-.-
T Consensus 111 ~RCpeCG~~fkL 122 (129)
T 2y69_F 111 QRCPSCGTHYKL 122 (129)
T ss_dssp EECTTTCCEEEE
T ss_pred eeCCCCCeEEEE
Confidence 499999987543
No 256
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.14 E-value=45 Score=15.09 Aligned_cols=13 Identities=15% Similarity=0.524 Sum_probs=10.5
Q ss_pred eEEcCCCCCceee
Q psy1204 29 YVLCKDCHKESKV 41 (71)
Q Consensus 29 ~i~CndC~~~s~v 41 (71)
...|..|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2em5_A 12 SHQCHECGRGFTL 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCcCCCccCC
Confidence 3679999998864
Done!