RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1204
(71 letters)
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1;
zinc-binding protein, cytoplasm, metal-binding,
nucleus, metal binding protein; NMR {Homo sapiens}
Length = 79
Score = 96.9 bits (241), Expect = 8e-29
Identities = 32/65 (49%), Positives = 46/65 (70%)
Query: 1 MDMTPLWRQMDEEIASTPMPEEYKNVILYVLCKDCHKESKVLYHIIGLKCEHCGSYNTCR 60
+DMT WRQ+D+E+A TPMP EY+N+ + +LC DC+ S V +HI+G+KC+ C SYNT +
Sbjct: 9 LDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQ 68
Query: 61 IKKPN 65
Sbjct: 69 AGGRR 73
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 34.4 bits (80), Expect = 8e-04
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
Query: 4 TPLWRQMDEEIASTPM-----PEEYKNVILYVLCKDCHKESK 40
TP+ + E+I T + P E N+++Y L D ES
Sbjct: 188 TPMTDWVPEDIFQTALGRAAEPVEVSNLVVY-LASD---ESS 225
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4
type zinc finger, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 157
Score = 28.1 bits (62), Expect = 0.15
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 9/41 (21%)
Query: 29 YVLCKDCH-------KESKVLYHIIGLKCEHCGSYNTCRIK 62
+VLC +C K IG C+ CG
Sbjct: 103 FVLCPECENPETDLHVNPKK--QTIGNSCKACGYRGMLDTH 141
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation
factor 6, EIF6, transla large ribosomal subunit, rRNA;
3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A
4a1d_A
Length = 94
Score = 27.2 bits (60), Expect = 0.27
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 29 YVLCKDCHKESKVLYHIIGLKCEHCGSYNTCRIKKPNGQE 68
+ LC+ C K + YH L+C CG + + +
Sbjct: 16 HTLCRRCGKAT---YHKQKLRCAACGYPDAKMRRYDGWGQ 52
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR
{Homo sapiens}
Length = 170
Score = 27.4 bits (60), Expect = 0.30
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 9/45 (20%)
Query: 26 VILYVLCKDCH-------KESKVLYHIIGLKCEHCGSYNTCRIKK 63
+ +VLC +C K IG C+ CG
Sbjct: 93 IKKFVLCPECENPETDLHVNPKK--QTIGNSCKACGYRGMLDTHH 135
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA;
metallochaperone, metal-binding, metal- binding protein;
NMR {Helicobacter pylori}
Length = 119
Score = 26.3 bits (58), Expect = 0.53
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 32 CKDCHKESKVLYHIIGLKCEHCGSYNT 58
CKDC K G+ CE C S N
Sbjct: 76 CKDCSHVFKPNALDYGV-CEKCHSKNV 101
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 26.7 bits (59), Expect = 0.61
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 29 YVLCKDCHKESK----VLYHIIGLKCEHCG 54
+ +C+ C +E +H + C CG
Sbjct: 161 FPMCEKCSREYHDPHDRRFHAQPVACFDCG 190
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB:
1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1*
1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1*
1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Length = 57
Score = 25.0 bits (55), Expect = 0.80
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 29 YVLCKDCHKESKVLYHIIGLKCEHCGSYNTCRIKKPN 65
+ C+ C ++S YH C CG + + +
Sbjct: 17 HTKCRRCGEKS---YHTKKKVCSSCGFGKSAKRRDYE 50
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2,
initiation factor 2 alpha subunit, initiation factor 2
beta subunit; 2.80A {Sulfolobus solfataricus} PDB:
2nxu_A 2qmu_C* 3v11_C*
Length = 139
Score = 26.1 bits (57), Expect = 0.91
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 3/30 (10%)
Query: 29 YVLCKDCHK---ESKVLYHIIGLKCEHCGS 55
YV C C K + C CG+
Sbjct: 103 YVECSTCKSLDTILKKEKKSWYIVCLACGA 132
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase;
HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 25.9 bits (57), Expect = 1.3
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 29 YVLCKDCHKE----SKVLYHIIGLKCEHCG 54
+ LC C KE +H + C CG
Sbjct: 67 FPLCPACDKEYRDPLDRRFHAQPVACPECG 96
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 1.8
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 16/73 (21%)
Query: 6 LWRQMDEEIASTPMPEEYKNVILYVLCKDCHKESKVLYHIIGL----KCE-----H---C 53
+W + + + + +K Y L + KES + I L K E H
Sbjct: 395 IWFDVIKSDVMVVVNKLHK----YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 54 GSYNTCRIKKPNG 66
YN + +
Sbjct: 451 DHYNIPKTFDSDD 463
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus}
PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5
2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5
2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Length = 60
Score = 23.7 bits (52), Expect = 3.0
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 5/29 (17%)
Query: 29 YVLCKDCHKESKVLYHIIGLKCEHCGSYN 57
V C +C + H + C CG Y
Sbjct: 30 LVPCPECK--AMKPPHTV---CPECGYYA 53
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M*
1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5
2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y*
3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Length = 60
Score = 23.3 bits (51), Expect = 4.0
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 29 YVLCKDCHKESKVLYHIIGLKCEHCGSYN 57
C CH K+ +HI C +CG Y+
Sbjct: 30 LTECPQCH-GKKLSHHI----CPNCGYYD 53
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 24.2 bits (52), Expect = 4.6
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 9/51 (17%)
Query: 10 MDEEIASTPMPEEYKNVILYVLCKDCHKESKVLYH------IIGLKCEHCG 54
M E N+ + + C +C + ++ C CG
Sbjct: 2 MTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVV---CALCG 49
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris} SCOP: i.1.1.1
Length = 97
Score = 23.8 bits (51), Expect = 4.6
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 29 YVLCKDCHKESKVLYHIIGLKCEHCGSYNTCRIKKPNGQES 69
+ LC+ C ++ YH+ C CG Y R +K N
Sbjct: 16 HTLCRRCGSKA---YHLQKSTCGKCG-YPAKRKRKYNWSAK 52
>3zym_A Phosphatidylinositol-binding clathrin assembly PR
vesicle-associated membrane protein...; endocytosis,
synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A
{Rattus norvegicus}
Length = 310
Score = 24.1 bits (51), Expect = 5.7
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 6 LWRQMDEEIASTPMPEEYKNVILYVLCKDCHKESKVLYHII 46
+ QMD + E N ++ K++ L+
Sbjct: 178 IQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAY 218
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer
membrane, electron trans; HET: HEC; 3.20A {Shewanella
oneidensis}
Length = 669
Score = 23.7 bits (49), Expect = 7.6
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 14 IASTPMPEEYKNVILYVLCKDCHKESKVLYH 44
+S M +N++ C CH
Sbjct: 176 QSSGNMLAYTRNLVSIDTCNSCHSNLAFHGG 206
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j
1s1i_Y 3jyw_Y
Length = 94
Score = 23.0 bits (49), Expect = 10.0
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 29 YVLCKDCHKESKVLYHIIGLKCEHCGSYNTCRIKKPNGQESG 70
+ LC C + S +H+ C CG Y RI+K N
Sbjct: 16 HTLCVRCGRRS---FHLQKSTCSSCG-YPAARIRKYNWSVKA 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.439
Gapped
Lambda K H
0.267 0.0587 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,122,638
Number of extensions: 50665
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 37
Length of query: 71
Length of database: 6,701,793
Length adjustment: 41
Effective length of query: 30
Effective length of database: 5,557,032
Effective search space: 166710960
Effective search space used: 166710960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)