RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1204
         (71 letters)



>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 244

 Score = 31.2 bits (70), Expect = 0.005
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 6/36 (16%)

Query: 4   TPLWRQMDEEIASTPM-----PEEYKNVILYVLCKD 34
           TP+   + E+I  T +     P E  N+++Y L  D
Sbjct: 187 TPMTDWVPEDIFQTALGRAAEPVEVSNLVVY-LASD 221


>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of
           estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 302

 Score = 25.7 bits (56), Expect = 0.48
 Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 4   TPLWRQMDEEIASTPMPEEYKNVILYVLCKD 34
                 M E++     PE    ++L+ LC +
Sbjct: 197 RMTETVMPEDLVEALKPEYVAPLVLW-LCHE 226


>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation
          initiation factor 2 beta {Archaeon Methanobacterium
          thermoautotrophicum [TaxId: 145262]}
          Length = 37

 Score = 23.8 bits (52), Expect = 0.57
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 11/34 (32%)

Query: 29 YVLCKDCH-------KESKVLYHIIGLKCEHCGS 55
          +V+C +C+       +E ++      LKCE CG+
Sbjct: 1  FVICHECNRPDTRIIREGRISL----LKCEACGA 30


>d1vqo11 g.41.8.2 (1:1-56) Ribosomal protein L37e {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 56

 Score = 23.9 bits (52), Expect = 0.89
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 29 YVLCKDCHKESKVLYHIIGLKCEHCGSYNTCRIKKPN 65
          +  C+ C ++S   YH     C  CG   + + +   
Sbjct: 16 HTKCRRCGEKS---YHTKKKVCSSCGFGKSAKRRDYE 49


>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase
          {Pseudaminobacter salicylatoxidans [TaxId: 93369]}
          Length = 351

 Score = 24.3 bits (52), Expect = 1.3
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 2  DMTPLWRQMDEEIASTPMPE 21
           + PLW Q+ + +   P  +
Sbjct: 18 SIIPLWTQLGDLMPIHPKSK 37


>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 244

 Score = 24.2 bits (52), Expect = 1.7
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 4   TPLWRQMDEEIASTPMPEEYKNVILY 29
           T   +     +  T  PEE  N +++
Sbjct: 194 TGFIKNPSTSLGPTLEPEEVVNRLMH 219


>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation
          initiation factor 2 beta {Archaeon Methanococcus
          jannaschii [TaxId: 2190]}
          Length = 36

 Score = 21.5 bits (46), Expect = 5.8
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 11/33 (33%)

Query: 30 VLCKDCH-------KESKVLYHIIGLKCEHCGS 55
          V+C++C        KE +V      LKC  CG+
Sbjct: 1  VICRECGKPDTKIIKEGRVHL----LKCMACGA 29


>d1up9a_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio
          desulfuricans, different strains [TaxId: 876]}
          Length = 107

 Score = 22.1 bits (46), Expect = 7.1
 Identities = 4/23 (17%), Positives = 4/23 (17%)

Query: 32 CKDCHKESKVLYHIIGLKCEHCG 54
          C  CH                C 
Sbjct: 30 CVTCHHLVDGKESYAKCGSSGCH 52


>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus
           kodakaraensis [TaxId: 311400]}
          Length = 218

 Score = 22.2 bits (47), Expect = 8.0
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 49  KCEHCGSY 56
           KCE CG Y
Sbjct: 148 KCEECGKY 155


>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating
          P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId:
          1423]}
          Length = 79

 Score = 21.8 bits (46), Expect = 9.0
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 40 KVLYHIIGLKCEHCGSYNTCRIKKPNGQES 69
          K  + I G+ C  C +    R+ K  G  +
Sbjct: 3  KAEFDIEGMTCAACANRIEKRLNKIEGVAN 32


>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
           NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
          Length = 561

 Score = 22.2 bits (47), Expect = 9.3
 Identities = 6/30 (20%), Positives = 11/30 (36%)

Query: 32  CKDCHKESKVLYHIIGLKCEHCGSYNTCRI 61
           C  C    ++     G  C  CG  +  ++
Sbjct: 518 CFTCGSTHEMTPTENGFVCSICGETDPKKM 547


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.439 

Gapped
Lambda     K      H
   0.267   0.0571    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 295,618
Number of extensions: 11887
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 23
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)