Query psy12041
Match_columns 153
No_of_seqs 145 out of 1211
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 17:07:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 5.5E-43 1.9E-47 339.5 6.0 141 2-153 2159-2306(3245)
2 4akg_A Glutathione S-transfera 100.0 3.3E-42 1.1E-46 332.2 8.9 140 2-153 1979-2126(2695)
3 4akg_A Glutathione S-transfera 98.2 1.2E-07 4.2E-12 93.2 -0.7 72 39-111 2186-2257(2695)
4 3vkg_A Dynein heavy chain, cyt 98.0 9.1E-07 3.1E-11 88.0 0.6 71 39-111 2366-2436(3245)
5 1vr8_A GTP binding regulator; 46.0 12 0.00041 26.0 2.3 26 7-32 9-34 (142)
6 3pxi_A Negative regulator of g 32.5 31 0.001 30.0 3.3 63 86-149 582-660 (758)
7 1g8p_A Magnesium-chelatase 38 31.4 29 0.001 26.4 2.7 63 86-148 147-215 (350)
8 2r44_A Uncharacterized protein 25.0 86 0.0029 23.7 4.4 63 86-148 112-182 (331)
9 1r6b_X CLPA protein; AAA+, N-t 21.8 1.2E+02 0.0043 26.0 5.2 62 86-148 560-650 (758)
10 3p3v_A PTS system, N-acetylgal 20.9 29 0.001 24.7 0.8 49 36-93 18-66 (163)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=5.5e-43 Score=339.46 Aligned_cols=141 Identities=28% Similarity=0.570 Sum_probs=105.7
Q ss_pred cccchhCCCCCCcchhhhhHhhhcCCCcceEecCcchHHHHHHhhhhcchhHHHHHHHHhhhhhhchHHHHHhhHHHHhc
Q psy12041 2 ISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKVSYKLKLAESTAIDIDNLREGYRPVAKR 81 (153)
Q Consensus 2 i~~w~~~gLp~d~~s~ena~i~~~~~~~Pl~iDP~~~~~~wl~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~ye~a~~~ 81 (153)
|++|+.+|||+|++|+|||+|++++.||||+||||+||.+|||+++++++++|++ +.+.+|++.+ |.|+++
T Consensus 2159 i~~W~~~GLP~D~lSiENaiiv~~~~R~PLlIDPq~Qa~~WIk~~~~~~~l~v~~--------~~d~~f~~~L-E~ai~f 2229 (3245)
T 3vkg_A 2159 RLNWHANSLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKITKTS--------FLDSSFMKNL-ESALRF 2229 (3245)
T ss_dssp HHHHHHTTCCSSHHHHHHHHHTTSCSSCEEEECTTSHHHHHHHHHTGGGCCCCCC--------C-----HHHH-HHHHHH
T ss_pred HHHHHhCCCCCCchhhhHHHHHhcCCCceEEEChHHHHHHHHHHHhccCCceEee--------cCchhHHHHH-HHHHHc
Confidence 6899999999999999999999999999999999999999999999888899988 9999999999 999999
Q ss_pred CCceeEEEecccccCccchhccceeeE-------EecCCeeeecCCCeeEEEeecCCCCCCCHhhhcceEEEEEEeecC
Q psy12041 82 GALLFFVFSDISNVNPMYQYSLESYLE-------VPYGDKEVDYDVNFRLYLTTKIPNPTFDPSLYTKATVINYSVTAQ 153 (153)
Q Consensus 82 Gs~l~~li~~l~~idp~y~~~L~~~i~-------i~~g~k~i~~~~~F~l~l~t~~~~~~~~~~~~~~~~~inft~t~~ 153 (153)
|. +++|+|++++||+++|+|.+.+. |++||++|+|+|+|||||+||++||||+||+++++|+||||||++
T Consensus 2230 G~--pvLienvE~lDP~L~pvL~k~~~k~gg~~~I~lGdk~idy~~~FrlyltTkl~np~y~Pev~~kvtlINFtvT~~ 2306 (3245)
T 3vkg_A 2230 GC--PLLVQDVENIDPVLNPVLNKEIRKKGGRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPS 2306 (3245)
T ss_dssp TC--CEECCCCC----------------------------------CCCEEEEECCTTCCCCHHHHHTSEEEECCCCHH
T ss_pred CC--eEEEccccccchhHHHHHHHHHHhcCceEEEEECCeeEecCCCceEEEEecCCCCCCCHHHHhheEEEEEEecHH
Confidence 99 99999996699999999998765 999999999999999999999999999999999999999999963
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=3.3e-42 Score=332.22 Aligned_cols=140 Identities=16% Similarity=0.294 Sum_probs=133.5
Q ss_pred cccchhCCCCCCcchhhhhHhhhcC-CCcceEecCcchHHHHHHhhhhcchhHHHHHHHHhhhhhhchHHHHHhhHHHHh
Q psy12041 2 ISQWNSEGLPPDELSIQNGILSTRG-CHFPLCIDPQTQALKWIRNREDKNNLKVSYKLKLAESTAIDIDNLREGYRPVAK 80 (153)
Q Consensus 2 i~~w~~~gLp~d~~s~ena~i~~~~-~~~Pl~iDP~~~~~~wl~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~ye~a~~ 80 (153)
|++|+.+|||+|++|+|||+|++++ .||||+||||+||.+|||++ ++++++|++ +.+.+|++.+ |.|++
T Consensus 1979 i~~W~~~GLP~D~~s~eNaii~~~s~~r~PL~IDPq~qa~~wik~~-~~~~l~v~~--------~~d~~f~~~l-E~ai~ 2048 (2695)
T 4akg_A 1979 KMKWLECGLDKNDYFLENMSIVMNSQDAVPFLLDPSSHMITVISNY-YGNKTVLLS--------FLEEGFVKRL-ENAIR 2048 (2695)
T ss_dssp HHHHHHHTCCSCHHHHHHHHHHHHCCSSEEEEECSSTTHHHHHHHH-HGGGEEEEC--------TTSSTHHHHH-HHHHH
T ss_pred HHHHHhcCCCCCchhHhHHHHHhcccccCceEECcHHHHHHHHHHH-hcCCceEee--------CCcHHHHHHH-HHHHH
Confidence 6899999999999999999999997 99999999999999999998 577899988 9999999999 99999
Q ss_pred cCCceeEEEecccccCccchhccceeeE-------EecCCeeeecCCCeeEEEeecCCCCCCCHhhhcceEEEEEEeecC
Q psy12041 81 RGALLFFVFSDISNVNPMYQYSLESYLE-------VPYGDKEVDYDVNFRLYLTTKIPNPTFDPSLYTKATVINYSVTAQ 153 (153)
Q Consensus 81 ~Gs~l~~li~~l~~idp~y~~~L~~~i~-------i~~g~k~i~~~~~F~l~l~t~~~~~~~~~~~~~~~~~inft~t~~ 153 (153)
+|. +++|+|.+++||+++|+|.+.+. |++||++|+|+|+|||||+||++||||+||+++++|+||||||++
T Consensus 2049 ~G~--pvLien~E~lDp~L~pvL~k~~~k~gg~~~i~lGdk~idy~~~FrlyltTkl~np~y~Pei~~~vt~iNFtvT~~ 2126 (2695)
T 4akg_A 2049 FGS--VVIIQDGEFFDPIISRLISREFNHAGNRVTVEIGDHEVDVSGDFKLFIHSCDPSGDIPIFLRSRVRLVHFVTNKE 2126 (2695)
T ss_dssp TTC--EEEESCSSSCCSTTHHHHTTCCEECSSCEEEECSSSEEECCSSCEEEEEECCTTCCCCHHHHHHEEEEECCCCSH
T ss_pred cCC--eEEEccccccchhHHHHHhhHhhhcCCeEEEEECCeeEecCCCceEEEeeCCCCCCCCHHHHhheeEEEEEEcHH
Confidence 999 99999966699999999998765 999999999999999999999999999999999999999999974
No 3
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.22 E-value=1.2e-07 Score=93.17 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=63.8
Q ss_pred HHHHHHhhhhcchhHHHHHHHHhhhhhhchHHHHHhhHHHHhcCCceeEEEecccccCccchhccceeeEEec
Q psy12041 39 ALKWIRNREDKNNLKVSYKLKLAESTAIDIDNLREGYRPVAKRGALLFFVFSDISNVNPMYQYSLESYLEVPY 111 (153)
Q Consensus 39 ~~~wl~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~ye~a~~~Gs~l~~li~~l~~idp~y~~~L~~~i~i~~ 111 (153)
++.=|.+. |..+.+|.+|++++++|+.+++..|+.|+++|.+|+.|||+|.++..+||||++||.+|+.++.
T Consensus 2186 lI~~L~~s-K~~a~eI~~kl~~a~~t~~~I~~~R~~YrpvA~r~s~LyF~i~dL~~i~~mYq~SL~~F~~lF~ 2257 (2695)
T 4akg_A 2186 LMVTLNNL-KKEAMNIEKKLSESEEFFPQFDNLVEEYSIIGKHSVKIFSMLEKFGQFHWFYGISIGQFLSCFK 2257 (2695)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCchhhCCHHHHHHHHH
Confidence 34445444 6678899999999999999999999999999999999999999999999999999999987543
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.01 E-value=9.1e-07 Score=87.96 Aligned_cols=71 Identities=21% Similarity=0.502 Sum_probs=62.8
Q ss_pred HHHHHHhhhhcchhHHHHHHHHhhhhhhchHHHHHhhHHHHhcCCceeEEEecccccCccchhccceeeEEec
Q psy12041 39 ALKWIRNREDKNNLKVSYKLKLAESTAIDIDNLREGYRPVAKRGALLFFVFSDISNVNPMYQYSLESYLEVPY 111 (153)
Q Consensus 39 ~~~wl~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~ye~a~~~Gs~l~~li~~l~~idp~y~~~L~~~i~i~~ 111 (153)
.+.=|.+. |..+.+|.+|++++++++.+++..|+.|+++|.+|+.|||++.++..+| ||++||.+|+.++.
T Consensus 2366 LI~~L~~s-K~~s~eI~~kl~~a~~te~~I~~~R~~YrpvA~r~s~LyF~i~dL~~i~-mYQfSL~~F~~lF~ 2436 (3245)
T 3vkg_A 2366 VISTLETL-KKETTEIALKVEETETVMQEISEVSALYNPMALSCSRVYFAMEELSQFH-LYQFSLRAFLDIFY 2436 (3245)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTGGGGST-TCCCCHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCC-eeeCCHHHHHHHHH
Confidence 44445444 6678899999999999999999999999999999999999999999999 99999999977443
No 5
>1vr8_A GTP binding regulator; TM1622, structural genomics, joint CE structural genomics, JCSG, protein structure initiative, PS signaling protein; 1.75A {Thermotoga maritima} SCOP: d.312.1.1
Probab=46.04 E-value=12 Score=26.02 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=22.7
Q ss_pred hCCCCCCcchhhhhHhhhcCCCcceE
Q psy12041 7 SEGLPPDELSIQNGILSTRGCHFPLC 32 (153)
Q Consensus 7 ~~gLp~d~~s~ena~i~~~~~~~Pl~ 32 (153)
..-.|++.+|++.|+-+.....+||+
T Consensus 9 ~~~vpP~sySl~sAi~iL~~~~Y~Lv 34 (142)
T 1vr8_A 9 HHHHPPEAYSLDTAIFVLETRDYRLS 34 (142)
T ss_dssp SCSSCCTTSCHHHHHHTTCBTTBEEE
T ss_pred ccCCCCccccHHHHHHHhcCCceEEE
Confidence 45579999999999999999899975
No 6
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=32.52 E-value=31 Score=30.02 Aligned_cols=63 Identities=21% Similarity=0.359 Sum_probs=40.7
Q ss_pred eEEEecccccCccchhccceeeE---E-ecCCeeeecCCCeeEEEeecCCCCC-----------CCHhhhcce-EEEEEE
Q psy12041 86 FFVFSDISNVNPMYQYSLESYLE---V-PYGDKEVDYDVNFRLYLTTKIPNPT-----------FDPSLYTKA-TVINYS 149 (153)
Q Consensus 86 ~~li~~l~~idp~y~~~L~~~i~---i-~~g~k~i~~~~~F~l~l~t~~~~~~-----------~~~~~~~~~-~~inft 149 (153)
.+++++++.+++-.+..|...+. + ..+++.+++ .+++++++|..+... |.|++++|+ .+|.|.
T Consensus 582 vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~-~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~ 660 (758)
T 3pxi_A 582 VVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDF-RNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFH 660 (758)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBC-TTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC
T ss_pred EEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEecc-CCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecC
Confidence 78899999888766655543332 1 123343333 578899999865543 899999999 677663
No 7
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=31.38 E-value=29 Score=26.39 Aligned_cols=63 Identities=10% Similarity=0.070 Sum_probs=42.8
Q ss_pred eEEEecccccCccchhccce-----eeEEecCCeeeecCCCeeEEEeecCCCCCCCHhhhcceEE-EEE
Q psy12041 86 FFVFSDISNVNPMYQYSLES-----YLEVPYGDKEVDYDVNFRLYLTTKIPNPTFDPSLYTKATV-INY 148 (153)
Q Consensus 86 ~~li~~l~~idp~y~~~L~~-----~i~i~~g~k~i~~~~~F~l~l~t~~~~~~~~~~~~~~~~~-inf 148 (153)
.++|++++.+++-.+..|.. ...+...+.......+|.+..+|......+++.+.+|..+ +.+
T Consensus 147 vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l 215 (350)
T 1g8p_A 147 YLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEV 215 (350)
T ss_dssp EEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEEC
T ss_pred EEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEc
Confidence 77889998877655444432 1234444555666778998888875455899999999865 444
No 8
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=25.04 E-value=86 Score=23.70 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=41.4
Q ss_pred eEEEecccccCccchhccceee---EEecCCeeeecCCCeeEEEeecCCC--C--CCCHhhhcceEE-EEE
Q psy12041 86 FFVFSDISNVNPMYQYSLESYL---EVPYGDKEVDYDVNFRLYLTTKIPN--P--TFDPSLYTKATV-INY 148 (153)
Q Consensus 86 ~~li~~l~~idp~y~~~L~~~i---~i~~g~k~i~~~~~F~l~l~t~~~~--~--~~~~~~~~~~~~-inf 148 (153)
.+++++++.+++-.+..|...+ .+.+.+.....+..|.+..+++... . .+++.+.+|..+ +.+
T Consensus 112 vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i 182 (331)
T 2r44_A 112 FILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHL 182 (331)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEEC
T ss_pred EEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEc
Confidence 7788888887765544443222 2445677788888998887765332 1 378999999754 444
No 9
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=21.81 E-value=1.2e+02 Score=26.01 Aligned_cols=62 Identities=18% Similarity=0.349 Sum_probs=41.7
Q ss_pred eEEEecccccCccchhccceeeE---E-ecCCeeeecCCCeeEEEeecCCC------------------------CCCCH
Q psy12041 86 FFVFSDISNVNPMYQYSLESYLE---V-PYGDKEVDYDVNFRLYLTTKIPN------------------------PTFDP 137 (153)
Q Consensus 86 ~~li~~l~~idp~y~~~L~~~i~---i-~~g~k~i~~~~~F~l~l~t~~~~------------------------~~~~~ 137 (153)
.+++++++.++|-.+..|...+. + .-+++.+++ .++.++++|.... ..+.|
T Consensus 560 vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~-~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 638 (758)
T 1r6b_X 560 VLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTP 638 (758)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEEC-TTEEEEEEECSSCC-----------------CHHHHHHHSCH
T ss_pred EEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEec-CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCH
Confidence 78899999888755554443222 2 234667777 6788888886532 17889
Q ss_pred hhhcce-EEEEE
Q psy12041 138 SLYTKA-TVINY 148 (153)
Q Consensus 138 ~~~~~~-~~inf 148 (153)
++++|+ .+|.|
T Consensus 639 ~l~~R~~~~i~~ 650 (758)
T 1r6b_X 639 EFRNRLDNIIWF 650 (758)
T ss_dssp HHHTTCSEEEEC
T ss_pred HHHhhCCcceee
Confidence 999998 55555
No 10
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=20.86 E-value=29 Score=24.67 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=28.1
Q ss_pred cchHHHHHHhhhhcchhHHHHHHHHhhhhhhchHHHHHhhHHHHhcCCceeEEEeccc
Q psy12041 36 QTQALKWIRNREDKNNLKVSYKLKLAESTAIDIDNLREGYRPVAKRGALLFFVFSDIS 93 (153)
Q Consensus 36 ~~~~~~wl~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~ye~a~~~Gs~l~~li~~l~ 93 (153)
||||..|.+.. .-+.+-|+. -......+.+.+|+.|+-.|- -+.+-.++
T Consensus 18 HGQ~~~W~k~~-~~~~IiVvn------D~vA~D~~~k~~lk~A~P~gv--k~~i~sve 66 (163)
T 3p3v_A 18 HGQGQLWVKFL-NCNTVIVAN------DAVSEDKIQQSLMKTVIPSSI--AIRFFSIQ 66 (163)
T ss_dssp GSTHHHHHHHT-TCSEEEEEC------HHHHHCHHHHHHHGGGSCTTS--EEEEECHH
T ss_pred hhhhhhhhhhc-CCCEEEEEc------ccccCCHHHHHHHHhhCCCCc--eEEEEEHH
Confidence 57799999986 333333322 002234567777787777776 44444433
Done!