Query psy12041
Match_columns 153
No_of_seqs 145 out of 1211
Neff 7.6
Searched_HMMs 13730
Date Fri Aug 16 17:07:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12041.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12041hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vr8a1 d.312.1.1 (A:25-154) H 54.1 3.2 0.00023 26.9 2.0 22 11-32 1-22 (130)
2 d1a5ta2 c.37.1.20 (A:1-207) de 38.4 7.2 0.00052 26.6 2.0 55 86-149 111-165 (207)
3 d1j9ia_ a.6.1.5 (A:) Terminase 30.6 4 0.00029 23.6 -0.4 37 1-47 18-54 (68)
4 d1njfa_ c.37.1.20 (A:) delta p 30.2 15 0.0011 25.1 2.7 59 82-149 114-172 (239)
5 d1t4aa_ d.284.1.1 (A:) PurS su 27.8 5.2 0.00038 23.7 -0.3 13 30-42 12-24 (80)
6 d2bodx1 c.6.1.1 (X:2-286) Cell 27.3 39 0.0028 24.5 4.6 66 29-94 2-76 (285)
7 d2gnoa2 c.37.1.20 (A:11-208) g 23.1 40 0.0029 22.4 3.8 74 67-149 60-136 (198)
8 d1gtda_ d.284.1.1 (A:) PurS su 19.2 9.8 0.00071 22.5 -0.3 13 30-42 12-24 (82)
9 d1tvxa_ d.9.1.1 (A:) Platelet 18.5 23 0.0016 19.5 1.3 33 11-46 24-56 (64)
10 d1vq3a_ d.284.1.1 (A:) PurS su 16.6 12 0.00089 22.2 -0.3 13 30-42 18-30 (86)
No 1
>d1vr8a1 d.312.1.1 (A:25-154) Hypothetical protein TM1622 {Thermotoga maritima [TaxId: 2336]}
Probab=54.06 E-value=3.2 Score=26.93 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=20.0
Q ss_pred CCCcchhhhhHhhhcCCCcceE
Q psy12041 11 PPDELSIQNGILSTRGCHFPLC 32 (153)
Q Consensus 11 p~d~~s~ena~i~~~~~~~Pl~ 32 (153)
|++.+|++.|+-+..+..+||+
T Consensus 1 pP~sySl~sAi~iL~~~~Y~Lv 22 (130)
T d1vr8a1 1 PPEAYSLDTAIFVLETRDYRLS 22 (130)
T ss_dssp CCTTSCHHHHHHTTCBTTBEEE
T ss_pred CCccccHHHHHHHhcCCceEEE
Confidence 8999999999999988889975
No 2
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=38.44 E-value=7.2 Score=26.55 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=39.7
Q ss_pred eEEEecccccCccchhccceeeEEecCCeeeecCCCeeEEEeecCCCCCCCHhhhcceEEEEEE
Q psy12041 86 FFVFSDISNVNPMYQYSLESYLEVPYGDKEVDYDVNFRLYLTTKIPNPTFDPSLYTKATVINYS 149 (153)
Q Consensus 86 ~~li~~l~~idp~y~~~L~~~i~i~~g~k~i~~~~~F~l~l~t~~~~~~~~~~~~~~~~~inft 149 (153)
.+++++++.+.+--+..|.+.+. +..++-.++++|+..+ .+.|.+.||+..++|.
T Consensus 111 viIide~d~l~~~a~n~Llk~lE--------ep~~~~~fIl~t~~~~-~ll~tI~SRc~~i~~~ 165 (207)
T d1a5ta2 111 VVWVTDAALLTDAAANALLKTLE--------EPPAETWFFLATREPE-RLLATLRSRCRLHYLA 165 (207)
T ss_dssp EEEESCGGGBCHHHHHHHHHHHT--------SCCTTEEEEEEESCGG-GSCHHHHTTSEEEECC
T ss_pred eEEechhhhhhhhhhHHHHHHHH--------hhcccceeeeeecChh-hhhhhhcceeEEEecC
Confidence 67788888888766777765542 2344555677786554 5888999999999996
No 3
>d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]}
Probab=30.56 E-value=4 Score=23.63 Aligned_cols=37 Identities=24% Similarity=0.550 Sum_probs=26.8
Q ss_pred CcccchhCCCCCCcchhhhhHhhhcCCCcceEecCcchHHHHHHhhh
Q psy12041 1 MISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNRE 47 (153)
Q Consensus 1 ~i~~w~~~gLp~d~~s~ena~i~~~~~~~Pl~iDP~~~~~~wl~~~~ 47 (153)
+|..|..+|+|... ....-.|..+|.. .+..|+...+
T Consensus 18 TI~~W~~~G~Pv~~---------~Gg~G~~~~fdt~-~v~~Wl~~R~ 54 (68)
T d1j9ia_ 18 TIQNWQEQGMPVLR---------GGGKGNEVLYDSA-AVIKWYAERD 54 (68)
T ss_dssp HHHHHTTTTCCCSS---------CCCSSSCCEEEHH-HHHHHHTTTG
T ss_pred HHHHHHHCCCCeec---------CCCCCcceeecHH-HHHHHHHHHH
Confidence 36789999999763 2344577788864 5779997764
No 4
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=30.16 E-value=15 Score=25.11 Aligned_cols=59 Identities=10% Similarity=0.193 Sum_probs=43.0
Q ss_pred CCceeEEEecccccCccchhccceeeEEecCCeeeecCCCeeEEEeecCCCCCCCHhhhcceEEEEEE
Q psy12041 82 GALLFFVFSDISNVNPMYQYSLESYLEVPYGDKEVDYDVNFRLYLTTKIPNPTFDPSLYTKATVINYS 149 (153)
Q Consensus 82 Gs~l~~li~~l~~idp~y~~~L~~~i~i~~g~k~i~~~~~F~l~l~t~~~~~~~~~~~~~~~~~inft 149 (153)
|..-.++|.+++.+++--+..|.+.+. ++.++.+++++|.. ...+.+.+.+|+.++.|.
T Consensus 114 ~~~kviiIde~d~l~~~~q~~Llk~lE--------~~~~~~~~il~tn~-~~~i~~~i~SRc~~i~~~ 172 (239)
T d1njfa_ 114 GRFKVYLIDEVHMLSRHSFNALLKTLE--------EPPEHVKFLLATTD-PQKLPVTILSRCLQFHLK 172 (239)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHH--------SCCTTEEEEEEESC-GGGSCHHHHTTSEEEECC
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHh--------cCCCCeEEEEEcCC-ccccChhHhhhhcccccc
Confidence 443467888888888766666665542 35677788888864 567788899999999884
No 5
>d1t4aa_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Bacillus subtilis [TaxId: 1423]}
Probab=27.76 E-value=5.2 Score=23.70 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=9.6
Q ss_pred ceEecCcchHHHH
Q psy12041 30 PLCIDPQTQALKW 42 (153)
Q Consensus 30 Pl~iDP~~~~~~w 42 (153)
|=+.||||+|..=
T Consensus 12 ~gVlDPqG~ai~~ 24 (80)
T d1t4aa_ 12 ESVLDPQGSAVQH 24 (80)
T ss_dssp TTSCCHHHHHHHH
T ss_pred CCCcCcHHHHHHH
Confidence 3478999998644
No 6
>d2bodx1 c.6.1.1 (X:2-286) Cellulase E2 {Thermomonospora fusca, strain yx [TaxId: 2021]}
Probab=27.30 E-value=39 Score=24.48 Aligned_cols=66 Identities=11% Similarity=0.287 Sum_probs=39.2
Q ss_pred cceEecCcchHHHHHHhhhhcchhH-HHHHHHHh-------hhhhhc-hHHHHHhhHHHHhcCCceeEEEecccc
Q psy12041 29 FPLCIDPQTQALKWIRNREDKNNLK-VSYKLKLA-------ESTAID-IDNLREGYRPVAKRGALLFFVFSDISN 94 (153)
Q Consensus 29 ~Pl~iDP~~~~~~wl~~~~~~~~~~-i~~~~~~~-------~~~~~~-~~~~r~~ye~a~~~Gs~l~~li~~l~~ 94 (153)
.|+.+||..++..|.+......... +..|++.. .....+ ....+...+.+.+.|++..|++.++-.
T Consensus 2 ~PFyvnP~~~a~~~~~~~~~d~~~~~~~~~Ia~~Pta~W~~~~~~~~~~~~~~~~~~~a~~~g~~pv~V~Y~iP~ 76 (285)
T d2bodx1 2 SPFYVNPNMSSAEWVRNNPNDPRTPVIRDRIASVPQGTWFAHHNPGQITGQVDALMSAAQAAGKIPILVVYNAPG 76 (285)
T ss_dssp CSBCCCTTSHHHHHHHHCTTCTTHHHHHHHTTTSCBCEEECSCCTTTHHHHHHHHHHHHHHHTCBCEEEECCCSS
T ss_pred CCceeCCchHHHHHHHhcCCChhHHHHHHHHhcCCceEecCCCCCcchHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 5889999999999998764333332 22222211 000011 223444447777888888888988854
No 7
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}
Probab=23.06 E-value=40 Score=22.45 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=47.2
Q ss_pred chHHHHHhhHHHHhc---CCceeEEEecccccCccchhccceeeEEecCCeeeecCCCeeEEEeecCCCCCCCHhhhcce
Q psy12041 67 DIDNLREGYRPVAKR---GALLFFVFSDISNVNPMYQYSLESYLEVPYGDKEVDYDVNFRLYLTTKIPNPTFDPSLYTKA 143 (153)
Q Consensus 67 ~~~~~r~~ye~a~~~---Gs~l~~li~~l~~idp~y~~~L~~~i~i~~g~k~i~~~~~F~l~l~t~~~~~~~~~~~~~~~ 143 (153)
.++..|.+.+.+... |..=.++|.+++.++.--+..|.+.+. +..++=+++|+|..+ ..+.|-+.||+
T Consensus 60 ~Id~IR~i~~~~~~~~~~~~~KviIId~ad~l~~~aqNaLLK~LE--------EPp~~t~fiLit~~~-~~ll~TI~SRC 130 (198)
T d2gnoa2 60 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALE--------EPPEYAVIVLNTRRW-HYLLPTIKSRV 130 (198)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHH--------SCCTTEEEEEEESCG-GGSCHHHHTTS
T ss_pred CHHHHHHHHHHHhhCcccCCCEEEEEeCccccchhhhhHHHHHHh--------CCCCCceeeeccCCh-hhCHHHHhcce
Confidence 456666663333333 332267778888888766666665431 233444556777655 46899999999
Q ss_pred EEEEEE
Q psy12041 144 TVINYS 149 (153)
Q Consensus 144 ~~inft 149 (153)
.+++|.
T Consensus 131 ~~i~~~ 136 (198)
T d2gnoa2 131 FRVVVN 136 (198)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 999985
No 8
>d1gtda_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=19.16 E-value=9.8 Score=22.49 Aligned_cols=13 Identities=8% Similarity=0.304 Sum_probs=9.5
Q ss_pred ceEecCcchHHHH
Q psy12041 30 PLCIDPQTQALKW 42 (153)
Q Consensus 30 Pl~iDP~~~~~~w 42 (153)
|=+.||||+|..=
T Consensus 12 ~gVlDPqG~ai~~ 24 (82)
T d1gtda_ 12 KGMLNPEAATIER 24 (82)
T ss_dssp TTSCCHHHHHHHH
T ss_pred CCCcCcHHHHHHH
Confidence 4478999988544
No 9
>d1tvxa_ d.9.1.1 (A:) Platelet basic protein, PBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.50 E-value=23 Score=19.55 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=22.4
Q ss_pred CCCcchhhhhHhhhcCCCcceEecCcchHHHHHHhh
Q psy12041 11 PPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNR 46 (153)
Q Consensus 11 p~d~~s~ena~i~~~~~~~Pl~iDP~~~~~~wl~~~ 46 (153)
|++..+-..|+|.+.-...-+..||+. +|+++.
T Consensus 24 ~~~~~C~~~aVIf~tk~g~~vC~dP~~---~WVq~l 56 (64)
T d1tvxa_ 24 GKGTHCNQVEVIATLKDGRKICLDPDA---PRIKKI 56 (64)
T ss_dssp CCBTTBCSCEEEEEETTSCEEEECTTC---HHHHHH
T ss_pred ECCCCCCCceEEEEEeCCCEEECCCCh---HHHHHH
Confidence 555556667778766666678999975 566553
No 10
>d1vq3a_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Thermotoga maritima [TaxId: 2336]}
Probab=16.62 E-value=12 Score=22.22 Aligned_cols=13 Identities=15% Similarity=0.320 Sum_probs=9.7
Q ss_pred ceEecCcchHHHH
Q psy12041 30 PLCIDPQTQALKW 42 (153)
Q Consensus 30 Pl~iDP~~~~~~w 42 (153)
|=+.||||+|..=
T Consensus 18 ~gVlDPqG~av~~ 30 (86)
T d1vq3a_ 18 SNVRDPRGETIER 30 (86)
T ss_dssp TTSCCHHHHHHHH
T ss_pred CCCcCcHHHHHHH
Confidence 4478999998644
Done!