RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12041
         (153 letters)



>gnl|CDD|193257 pfam12781, AAA_9, ATP-binding dynein motor region D5.  The 380 kDa
           motor unit of dynein belongs to the AAA class of
           chaperone-like ATPases. The core of the 380 kDa motor
           unit contains a concatenated chain of six AAA modules,
           of which four correspond to the ATP binding sites with
           P-loop signatures described previously, and two are
           modules in which the P loop has been lost in evolution.
           This particular family is the D5 ATP-binding region of
           the motor, but has lost its P-loop.
          Length = 228

 Score = 85.0 bits (210), Expect = 4e-21
 Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 26/160 (16%)

Query: 2   ISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRN--REDKNNLKVSYK-- 57
           ++ WN+EGLP D +S +N  +      +PL +DPQ Q +KWI+N    D   +++  K  
Sbjct: 8   VATWNNEGLPSDRMSTENATILGNCERWPLMVDPQLQGIKWIKNKYGSDLRVIRIGQKGY 67

Query: 58  -----LKLAESTAIDIDNLREGYRPVAKRGALLFFVFSDISNVNPMY-QYSLESYLEVPY 111
                  ++E   + I+N+ E   PV                ++P+  + +++    +  
Sbjct: 68  LDVIEQAISEGDTVLIENIEESIDPV----------------LDPLLGRNTIKKGRYIKI 111

Query: 112 GDKEVDYDVNFRLYLTTKIPNPTFDPSLYTKATVINYSVT 151
           GDKEV+Y+  FRL L TK+ NP + P +  + T+IN++VT
Sbjct: 112 GDKEVEYNPKFRLILHTKLANPHYKPEMQAQCTLINFTVT 151


>gnl|CDD|218615 pfam05504, Spore_GerAC, Spore germination B3/ GerAC like,
           C-terminal.  The GerAC protein of the Bacillus subtilis
           spore is required for the germination response to
           L-alanine. Members of this family are thought to be
           located in the inner spore membrane. Although the
           function of this family is unclear, they are likely to
           encode the components of the germination apparatus that
           respond directly to this germinant, mediating the
           spore's response.
          Length = 171

 Score = 29.1 bits (66), Expect = 0.58
 Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 36  QTQALKWIRNREDKNNLKVSYKLKLAESTAIDIDNLREGYRPVAKRGALLFFVF----SD 91
           +T+ L W+R +     + V       E  +++I   +   +P  K G   F +      +
Sbjct: 20  ETRGLNWLRGKIKGGVITVKLPEGKGELISLEIIKSKTKIKPKIKNGKPKFKINIKLEGN 79

Query: 92  ISNVNPMYQYSLESYLE 108
           IS             L+
Sbjct: 80  ISEYQSPLDLFNPKELK 96


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,765,102
Number of extensions: 682026
Number of successful extensions: 560
Number of sequences better than 10.0: 1
Number of HSP's gapped: 560
Number of HSP's successfully gapped: 7
Length of query: 153
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 64
Effective length of database: 6,990,096
Effective search space: 447366144
Effective search space used: 447366144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)