RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12041
(153 letters)
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 149 bits (378), Expect = 8e-43
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 22/161 (13%)
Query: 2 ISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKVSYKLKLA 61
W++ LP DEL I+N I+ R +PL IDP QA++++ N+ +
Sbjct: 2159 RLNWHANSLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKITK---TSFL 2215
Query: 62 ESTAIDI--DNLREGYRPVAKRGALLFFVFSDISNVNPMYQYSLESYLE-------VPYG 112
+S+ + LR G P+ + D+ N++P+ L + + G
Sbjct: 2216 DSSFMKNLESALRFGC-PL---------LVQDVENIDPVLNPVLNKEIRKKGGRILIRLG 2265
Query: 113 DKEVDYDVNFRLYLTTKIPNPTFDPSLYTKATVINYSVTAQ 153
D++VD+ +F ++L T+ P F P L ++ T +N++VT
Sbjct: 2266 DQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPS 2306
Score = 74.9 bits (184), Expect = 1e-16
Identities = 13/56 (23%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 54 VSYKLKLAESTAIDIDNLREGYRPVAKRGALLFFVFSDISNVNPMYQYSLESYLEV 109
++ K++ E+ +I + Y P+A + ++F ++S + +YQ+SL ++L++
Sbjct: 2380 IALKVEETETVMQEISEVSALYNPMALSCSRVYFAMEELSQFH-LYQFSLRAFLDI 2434
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 130 bits (328), Expect = 5e-36
Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 32/165 (19%)
Query: 1 MISQWNSEGLPPDELSIQN-GILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKVSYKLK 59
+W GL ++ ++N I+ P +DP + + I N N + L
Sbjct: 1978 EKMKWLECGLDKNDYFLENMSIVMNSQDAVPFLLDPSSHMITVISNYY-GNKTVL---LS 2033
Query: 60 LAESTAIDI--DNLREGYRPVAKRGALLFFVFSDISNVNPMYQYSLESYLE--------- 108
E + + +R G V + D +P + +
Sbjct: 2034 FLEEGFVKRLENAIRFG-SVV---------IIQDGEFFDP----IISRLISREFNHAGNR 2079
Query: 109 --VPYGDKEVDYDVNFRLYLTTKIPNPTFDPSLYTKATVINYSVT 151
V GD EVD +F+L++ + P+ L ++ ++++
Sbjct: 2080 VTVEIGDHEVDVSGDFKLFIHSCDPSGDIPIFLRSRVRLVHFVTN 2124
Score = 84.1 bits (208), Expect = 8e-20
Identities = 13/56 (23%), Positives = 21/56 (37%)
Query: 54 VSYKLKLAESTAIDIDNLREGYRPVAKRGALLFFVFSDISNVNPMYQYSLESYLEV 109
+ KL +E DNL E Y + K +F + + Y S+ +L
Sbjct: 2200 IEKKLSESEEFFPQFDNLVEEYSIIGKHSVKIFSMLEKFGQFHWFYGISIGQFLSC 2255
Score = 26.3 bits (58), Expect = 5.3
Identities = 5/33 (15%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 103 LESYLEVPYGDKEVDYDVNFRLYLTTKIPNPTF 135
L ++E +E + F++++T +
Sbjct: 2458 LHKHVEETKAAEEHE---KFKMFMTCHLTGDKL 2487
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.21
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 21/43 (48%)
Query: 103 LESYLEVPYGDKEVDYDVNFRLYLTTKIPNPTFDPSLYTKATV 145
L++ L +LY + P+L KAT+
Sbjct: 25 LQASL---------------KLY----ADDSA--PALAIKATM 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 2.4
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 15/79 (18%)
Query: 64 TAIDIDNLREGYRPVAKRGALLFFVFSDISNVNPMYQYSLESYLEVPYGDKEVDYDVNFR 123
+ +ID++ + LF+ +S M Q +E L + +Y
Sbjct: 47 SKEEIDHIIMS-KDAVSGTLRLFWTL--LSKQEEMVQKFVEEVLRI-------NYK---- 92
Query: 124 LYLTTKIPNPTFDPSLYTK 142
+L + I PS+ T+
Sbjct: 93 -FLMSPIKTEQRQPSMMTR 110
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated
protein, nascent chain, cell division, isomerase; 2.7A
{Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1
PDB: 2vrh_A 1w2b_5
Length = 432
Score = 26.5 bits (59), Expect = 3.9
Identities = 7/47 (14%), Positives = 19/47 (40%)
Query: 50 NNLKVSYKLKLAESTAIDIDNLREGYRPVAKRGALLFFVFSDISNVN 96
+ L+ + + ++ RE + AKR ++ + ++ N
Sbjct: 312 DVLRRQAAQRFGGNEKQALELPRELFEEQAKRRVVVGLLLGEVIRTN 358
>1uhv_A Beta-xylosidase; family 39 glycoside hydrolase, xylan, xylose,
covalent glycosyl-enzyme intermediate; 2.10A
{Thermoanaerobacterium saccharolyticum} SCOP: b.71.1.2
c.1.8.3 PDB: 1px8_A
Length = 500
Score = 26.4 bits (57), Expect = 4.9
Identities = 11/64 (17%), Positives = 19/64 (29%)
Query: 72 REGYRPVAKRGALLFFVFSDISNVNPMYQYSLESYLEVPYGDKEVDYDVNFRLYLTTKIP 131
+ A + + S+ + + Y S + + F L IP
Sbjct: 285 QNPVHDTPFNAAYIARILSEGGDYVDSFSYWTFSDVFEERDVPRSQFHGGFGLVALNMIP 344
Query: 132 NPTF 135
PTF
Sbjct: 345 KPTF 348
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 26.0 bits (57), Expect = 6.1
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 71 LREGYRPVAKRGALLFFVFSDISNVNPMYQYSLESYLEVPYGDKEVDYDVNFRLYLTTKI 130
E R + G L+ V + + + M + ++ ++ K V L+
Sbjct: 135 FSEIRRVLVPDGLLIATVDNFYTFLQQMIEKD--AWDQITRFLKTQTTSVGTTLFSFNSY 192
Query: 131 P 131
Sbjct: 193 A 193
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 25.8 bits (57), Expect = 7.7
Identities = 15/74 (20%), Positives = 19/74 (25%), Gaps = 14/74 (18%)
Query: 68 IDNLRE-GYRPVAKRGALLFFVFSDISNVNPMYQYSLESYLEVPYGDKEVDYDVNFRLYL 126
E G A G +FV D S V + P D +L
Sbjct: 344 TSIFDELGLPYTAPEGT--YFVLVDFSKV------KIPEDYPYPEEILNKGKDFRISHWL 395
Query: 127 TTK-----IPNPTF 135
+ IP F
Sbjct: 396 INELGVVAIPPTEF 409
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.405
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,334,752
Number of extensions: 124175
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 15
Length of query: 153
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,328,508
Effective search space: 294338544
Effective search space used: 294338544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)