RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12041
         (153 letters)



>d1pgsa2 b.121.1.1 (A:141-314) Peptide:N-glycosidase F, PNGase F
           {Flavobacterium meningosepticum [TaxId: 238]}
          Length = 174

 Score = 26.0 bits (57), Expect = 1.8
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 95  VNPMYQYSLESYLEVPYGDKEVDYDVNFRLYLTTKIPNPTFDPSLYTKAT 144
           V P+ QY+  S   VPYG           L    ++P  T    L T  +
Sbjct: 5   VVPVIQYNKSSIDGVPYGKAH-----TLGLKKNIQLPTNTEKAYLRTTIS 49


>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 113

 Score = 24.5 bits (53), Expect = 4.7
 Identities = 3/27 (11%), Positives = 12/27 (44%)

Query: 7  SEGLPPDELSIQNGILSTRGCHFPLCI 33
           + L  + + +++  L+     F + +
Sbjct: 40 RQDLEAEHVEVEDTTLNRCATSFRVLV 66


>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
           [TaxId: 1063]}
          Length = 288

 Score = 24.1 bits (52), Expect = 9.1
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 8/78 (10%)

Query: 56  YKLKLAESTAIDIDNLREGYRPVAKRGALLFFVFSDISNVNPMYQYSLESYLEVPYGDKE 115
             LK+     I+++ +++ +R  A RG     V   I      Y + +            
Sbjct: 147 ADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFS------- 199

Query: 116 VDYDVNFRLYLTTKIPNP 133
              D+NF+        NP
Sbjct: 200 -QTDINFQRVPVVDTSNP 216


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 576,462
Number of extensions: 24762
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 5
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)