Query psy12043
Match_columns 143
No_of_seqs 169 out of 1052
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 17:10:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoe_A Acetylcholine-binding p 100.0 8.2E-42 2.8E-46 247.3 14.4 136 3-142 35-183 (205)
2 4aod_A Acetylcholine-binding p 100.0 2.8E-41 9.5E-46 244.6 13.7 136 3-142 35-183 (205)
3 3sq6_A ACHBP, neuronal acetylc 100.0 1.4E-40 4.9E-45 240.9 14.4 137 3-142 33-181 (204)
4 2qc1_B Acetylcholine receptor 100.0 1.2E-40 4.2E-45 242.4 13.0 136 4-141 37-187 (212)
5 3igq_A GLR4197 protein; plgic 100.0 1.3E-39 4.3E-44 235.4 11.0 136 3-142 22-171 (201)
6 2bg9_C Acetylcholine receptor 100.0 3E-37 1E-41 240.7 13.9 134 7-141 44-185 (369)
7 4aq5_A Acetylcholine receptor 100.0 2.6E-37 8.8E-42 246.9 11.6 137 4-141 60-210 (461)
8 2bg9_A Acetylcholine receptor 100.0 2.5E-37 8.4E-42 241.3 10.7 134 7-141 42-186 (370)
9 2bg9_B Acetylcholine receptor 100.0 7.3E-37 2.5E-41 238.6 11.8 134 5-139 40-185 (370)
10 3tlw_A GLR4197 protein, GLIC; 100.0 1.3E-36 4.3E-41 233.2 12.8 129 7-139 33-172 (321)
11 2bg9_E Acetylcholine receptor 100.0 4E-37 1.4E-41 240.1 9.3 134 7-141 41-186 (370)
12 4afh_A ACHBP; acetylcholine-bi 100.0 3.4E-36 1.2E-40 221.3 13.3 130 4-141 41-190 (230)
13 4aq5_C Acetylcholine receptor 100.0 5.9E-36 2E-40 242.1 13.3 136 3-140 58-220 (522)
14 2wn9_A Soluble acetylcholine r 100.0 4.6E-36 1.6E-40 220.5 11.5 132 4-141 45-193 (228)
15 2bj0_A Acetylcholine-binding p 100.0 1.6E-35 5.3E-40 214.2 13.7 132 3-141 31-180 (203)
16 3rhw_A Avermectin-sensitive gl 100.0 1.4E-35 4.9E-40 229.5 13.9 133 7-139 41-189 (347)
17 4aq5_E Acetylcholine receptor 100.0 2.5E-36 8.7E-41 242.6 8.4 136 3-140 34-192 (488)
18 1uw6_A Acetylcholine-binding p 100.0 7E-35 2.4E-39 211.9 14.0 130 4-141 35-182 (211)
19 4aq5_B Acetylcholine receptor 100.0 2.8E-36 9.6E-41 242.6 7.1 133 7-140 66-219 (493)
20 3rqw_A ELIC pentameric ligand 100.0 3.8E-32 1.3E-36 208.4 11.4 129 3-139 18-169 (322)
21 1g6e_A Antifungal protein; all 73.6 0.76 2.6E-05 26.8 0.2 44 1-54 32-76 (87)
22 2l4j_A YES-associated protein 22.0 17 0.00059 18.9 -0.2 10 23-32 36-45 (46)
No 1
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=100.00 E-value=8.2e-42 Score=247.32 Aligned_cols=136 Identities=18% Similarity=0.407 Sum_probs=121.6
Q ss_pred eEEEEeec---eeEEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEECCCCcccCCccccccCCCCCCCCCcceEEEEeeC
Q psy12043 3 CIIQSILN---SKLVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSD 79 (143)
Q Consensus 3 v~i~~i~~---~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~~~~~iW~Pdi~~~n~~~~~~~~~~~~~~v~v~~~ 79 (143)
+.|++|++ ..+.+++++|+++.|+|+||+||| +|+|++.+.+++++||+||++++|+++. ........+.|+++
T Consensus 35 l~l~~i~~vde~~q~~~~~~wl~~~W~D~rL~W~~-~~~~i~~i~v~~~~IW~PDi~l~N~~~~--~~~~~~~~v~v~~~ 111 (205)
T 4aoe_A 35 YSLQDIYTADVGTDQVELGLWLVISWKDRSLSWSN-ECTTFNELTLPSKYIWLPHIEVYNSIGK--PGIHSDQLVRVYKD 111 (205)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSC-CCSCCCEEEEEGGGSCCCCCEETTBSSC--CEECSCCEEEEETT
T ss_pred EEEEEeeeEcccCCEEEEEEEEEEEEECCccccCC-cCCCccEEEeCHHHhccccEEEeccccc--cccccceEEEEeCC
Confidence 34555554 568889999999999999999998 7999999999999999999999998863 33345788999999
Q ss_pred CeEEEecCcEEEEEecccccccCCccceEEEEEeccccCCCeEEEE----------eecCcEEEEeeeEeEEe
Q psy12043 80 GLISWVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFH----------FEDGNWRMNGDASEFKI 142 (143)
Q Consensus 80 G~V~~~~~~~~~~~C~~~~~~fPfD~q~C~l~f~s~~y~~~~v~l~----------~~n~EW~l~~~~~~~~~ 142 (143)
|+|.|.+|++++++|+|+ ..||||+|+|.|+||||+|++.+|+|. .+||||+|+++++....
T Consensus 112 G~V~~~~~~~~~s~C~~d-~~fPfD~Q~C~l~fgSw~y~~~~l~l~~~~~~dl~~~~~n~EW~l~~~~~~r~~ 183 (205)
T 4aoe_A 112 GTVTFVPQYTIRFSCALE-NVTTEQGAACTLKFGPWTYDVRDLVLDESQQVDLTTYAGGERFQLIEAKQKVNK 183 (205)
T ss_dssp SEEEECCEEEEEEECCCT-TSSSSSCEEEEEEEECSSCCTTTEEEECSSSCBCTTSCTTCSEEEEEEEEEEEE
T ss_pred cEEEEeCcEEEEEecccC-cCCCccCCeEEEEEECccCChheEEEecCcccchhccccCCcEEEEeeEEEEEE
Confidence 999999999999999999 889999999999999999999999997 68999999999887654
No 2
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=100.00 E-value=2.8e-41 Score=244.65 Aligned_cols=136 Identities=21% Similarity=0.422 Sum_probs=122.0
Q ss_pred eEEEEeec---eeEEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEECCCCcccCCccccccCCCCCCCCCcceEEEEeeC
Q psy12043 3 CIIQSILN---SKLVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSD 79 (143)
Q Consensus 3 v~i~~i~~---~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~~~~~iW~Pdi~~~n~~~~~~~~~~~~~~v~v~~~ 79 (143)
+.|++|++ ..+++++++|+++.|+|+||+|+| +|+||+.+.+++++||+||++++|+++. ........+.|+++
T Consensus 35 l~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~W~~-~~~~i~~i~v~~~~IW~PDi~l~N~~~~--~~~~~~~~~~v~~~ 111 (205)
T 4aod_A 35 YSLQKIFRADVENDEVDIGLWTTLVWKDRCLNWFN-EFTSFKELTVPIAEIWTPDIFIFDSVGA--PEIFSDKLARVSQD 111 (205)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSC-CCSCCCEEEEEGGGSCCCCEEETTBSSC--CEECSCCEEEEETT
T ss_pred EEeeeeeeecccCCEEEEEEEEEEEEECCceeeCC-cCCCccEeeccHHhcCcCCEEEEccccc--ceeecceEEEEecC
Confidence 35566654 568889999999999999999997 7999999999999999999999999873 23345778999999
Q ss_pred CeEEEecCcEEEEEecccccccCCccceEEEEEeccccCCCeEEEE----------eecCcEEEEeeeEeEEe
Q psy12043 80 GLISWVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFH----------FEDGNWRMNGDASEFKI 142 (143)
Q Consensus 80 G~V~~~~~~~~~~~C~~~~~~fPfD~q~C~l~f~s~~y~~~~v~l~----------~~n~EW~l~~~~~~~~~ 142 (143)
|+|.|.+|++++++|+|++.+|||| |+|.|+||||+|++.+|+|. .+||||+|+++.+....
T Consensus 112 G~V~~~~~~~~~s~C~~d~~~fPfD-Q~C~l~fgSw~y~~~~i~l~~~~~~dl~~~~~n~EW~l~~~~~~~~~ 183 (205)
T 4aod_A 112 GTVTYVPQLKVRLSCPLADLKLETG-VTCSLKSGSWTHSTQELTLEVNAKVDLGDYASDTRFQLLNATQQVNR 183 (205)
T ss_dssp SEEEECCEEEEEEECCCTTSSSSSC-EEEEEEEEESSCCTTTEEEECSSSCBCTTSCTTCSSEEEEEEEEEEE
T ss_pred CEEEEeccEEEEEEecCccccCCCC-cEEEEEEECccccccEEEEEECCCcccccccccCCEEEEeeEEEEEE
Confidence 9999999999999999999999999 99999999999999999998 68999999999887654
No 3
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=100.00 E-value=1.4e-40 Score=240.86 Aligned_cols=137 Identities=20% Similarity=0.426 Sum_probs=120.9
Q ss_pred eEEEEee---ceeEEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEECCCCcccCCccccccCCCCCCCCCcceEEEEeeC
Q psy12043 3 CIIQSIL---NSKLVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSD 79 (143)
Q Consensus 3 v~i~~i~---~~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~~~~~iW~Pdi~~~n~~~~~~~~~~~~~~v~v~~~ 79 (143)
+.|++|. +..+++++++|+++.|+|+||+|||++|+|++.+.++.++||+||++++|+++..+.++. ..++|+++
T Consensus 33 ~~l~~i~~v~e~~~~~t~~~~~~~~W~D~rL~w~~~~~~~i~~i~~~~~~iW~PDi~~~N~~~~~~~~~~--~~v~v~~~ 110 (204)
T 3sq6_A 33 LSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTP--QLALVNSS 110 (204)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTSSSCCEEEEEGGGSCCCCEEETTBSSCCEECSC--CEEEEETT
T ss_pred EEhhheeehhccccEEEEEEeeeeEEECCCcccChHHcCCccEEEcCHHHCcCCCEEeEcccccCCcccc--cEEEEEeC
Confidence 3445554 456888899999999999999999999999999999999999999999999873212222 39999999
Q ss_pred CeEEEecCcEEEEEecccccccCCccceEEEEEeccccCCCeEEEE---------eecCcEEEEeeeEeEEe
Q psy12043 80 GLISWVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFH---------FEDGNWRMNGDASEFKI 142 (143)
Q Consensus 80 G~V~~~~~~~~~~~C~~~~~~fPfD~q~C~l~f~s~~y~~~~v~l~---------~~n~EW~l~~~~~~~~~ 142 (143)
|+|.|.++++++++|+|++ +||||+|+|+|+|+||+|++++|++. .+||||+|++..+....
T Consensus 111 G~V~~~~~~~~~~~C~mdl-~fPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~eW~l~~~~~~~~~ 181 (204)
T 3sq6_A 111 GHVQYLPSIRQRFSCDVSG-VDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSE 181 (204)
T ss_dssp SEEEECCEEEEEEECCCGG-GSSSSCEEEEEEEEESSCCTTTEEEECCCCCCTTSCSSSSEEEEEEEEEEEE
T ss_pred CEEEEecCeeEEEeccccc-cCCCCCcEEEEEEEeecccCeEEEEEeccCCHHHcccCCCEEEEEeEEEEEE
Confidence 9999999999999999999 99999999999999999999999997 67999999999886543
No 4
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=100.00 E-value=1.2e-40 Score=242.44 Aligned_cols=136 Identities=28% Similarity=0.672 Sum_probs=121.8
Q ss_pred EEEEee---ceeEEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEECCCCcccCCccccccCCCCCCCC-CcceEEEEeeC
Q psy12043 4 IIQSIL---NSKLVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSP-FGETYHIASSD 79 (143)
Q Consensus 4 ~i~~i~---~~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~~~~~iW~Pdi~~~n~~~~~~~~~-~~~~~v~v~~~ 79 (143)
.|.+|. +..+.+++++|+++.|+|+||+|+|++|+|++.+.++.++||+||++++|++++ .++ .....++|++|
T Consensus 37 ~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~l~~~~~~iW~PDi~~~N~~~~--~~~~~~~~~~~v~~~ 114 (212)
T 2qc1_B 37 QLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSEKIWRPDVVLYNNADG--DFAIVKFTKVLLDYT 114 (212)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCGGGGTTCCEEEECGGGSCCCCEEECCBTTT--SSCEECCCCEEEETT
T ss_pred EEecccccccCCcEEEEEEEEeeEEECCCcccChhhcCCeeEEEcchhhccCCceeccccccc--cccccceeeEEEECC
Confidence 444544 466888999999999999999999999999999999999999999999999874 233 23478999999
Q ss_pred CeEEEecCcEEEEEecccccccCCccceEEEEEeccccCCCeEEEE-----------eecCcEEEEeeeEeEE
Q psy12043 80 GLISWVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFH-----------FEDGNWRMNGDASEFK 141 (143)
Q Consensus 80 G~V~~~~~~~~~~~C~~~~~~fPfD~q~C~l~f~s~~y~~~~v~l~-----------~~n~EW~l~~~~~~~~ 141 (143)
|+|.|.++++++++|+|++++||||+|+|+|+|+||+|++++|++. ..+|||+|++..+...
T Consensus 115 G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~ew~l~~~~~~~~ 187 (212)
T 2qc1_B 115 GHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAINPESDQPDLSNFMESGEWVIKEARGWKH 187 (212)
T ss_dssp CEEEECCEEEEEEEEEECCSSSSCCEEEEEEEEEESSCCTTTEEEEESCSSCBCTTCCCCSSEEEEEEEEEEE
T ss_pred eeEEEEeeeEEEEEccceeecCCCCceEEeEEEEcccccCceEEEEecccccchhhCccCCCEEEEEeEEEEE
Confidence 9999999999999999999999999999999999999999999997 5799999999887654
No 5
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=100.00 E-value=1.3e-39 Score=235.38 Aligned_cols=136 Identities=18% Similarity=0.240 Sum_probs=116.3
Q ss_pred eEEEEeec---eeEEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEECCCCcccCCccccccCCCCCCCCCcceEEEEeeC
Q psy12043 3 CIIQSILN---SKLVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSD 79 (143)
Q Consensus 3 v~i~~i~~---~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~~~~~iW~Pdi~~~n~~~~~~~~~~~~~~v~v~~~ 79 (143)
++|++|++ ..+++++++|+++.|+|+||+|||++ +|+..+.++.++||+||++++|+++. ....+..++|+++
T Consensus 22 l~l~~i~~vdE~~~~~t~~~~l~~~W~D~rL~w~~~~-~~i~~~~~~~~~IW~PDi~l~N~~~~---~~~~~~~v~v~~~ 97 (201)
T 3igq_A 22 IYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVR-SGVRVKTYEPEAIWIPEIRFVNVENA---RDADVVDISVSPD 97 (201)
T ss_dssp EEEEEEECCCTTSSEEEEEEEEEEEEECGGGCCCHHH-HTCSCEECCGGGSCCCCEEESSBSSS---CEEEEEEEEECTT
T ss_pred EEeeecccCcccCCEEEEEEEEeeEEECCccCCCCcC-CCEeEecccccCcCccCEEEEccccc---ccccceEEEEeCC
Confidence 45666654 56888899999999999999999998 68999999999999999999999763 2245789999999
Q ss_pred CeEEEecCcEEEEEecccccccCCccceEEEEEeccccCCCeEEEE-----------eecCcEEEEeeeEeEEe
Q psy12043 80 GLISWVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFH-----------FEDGNWRMNGDASEFKI 142 (143)
Q Consensus 80 G~V~~~~~~~~~~~C~~~~~~fPfD~q~C~l~f~s~~y~~~~v~l~-----------~~n~EW~l~~~~~~~~~ 142 (143)
|+|.|.++++++++|+|++++||||+|+|+|+|+||+|++++|+|. .+++||+|++..+....
T Consensus 98 G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~ew~l~~~~~~~~~ 171 (201)
T 3igq_A 98 GTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKP 171 (201)
T ss_dssp CEEEEEEEEEEEEECCCC------CEEEEEEEEEECCCSSCCEEEEECGGGCEESCSEEETTEEEEEEEEEEEC
T ss_pred CcEEEecceeEEEecCcccccCCCCccEeeEEEeccCCCceEEEEEecCCccccccCcccCCeEEEeeEEEEEE
Confidence 9999999999999999999999999999999999999999999997 68999999999887654
No 6
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=3e-37 Score=240.73 Aligned_cols=134 Identities=26% Similarity=0.600 Sum_probs=119.5
Q ss_pred EeeceeEEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEECCCCcccCCccccccCCCCCCCCCcceEEEEeeCCeEEEec
Q psy12043 7 SILNSKLVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLISWVP 86 (143)
Q Consensus 7 ~i~~~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~~~~~iW~Pdi~~~n~~~~~~~~~~~~~~v~v~~~G~V~~~~ 86 (143)
+|.+.++++++++|+++.|+|+||+|||++|+|++.+.++.++||+||++++|++++. .......++.|++||+|.|.+
T Consensus 44 ~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~~IW~PDi~~~N~~~~~-~~~~~~~~~~i~~~G~V~~~~ 122 (369)
T 2bg9_C 44 SLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQNNNDGQ-YNVAYFCNVLVRPNGYVTWLP 122 (369)
T ss_dssp EEETTTTEEEEEEEEEEEEECTTTCCCCCCCCTCSCEEECGGGSCCCCEEETTTCSSC-CBSSSSCCEEECSSSEEEECC
T ss_pred cccccccceEEEEEEeeeeECCCcccCccccCCeeEEEecHHhccCCcEecccccccc-ccccccccEEEECCccEEEec
Confidence 3445678899999999999999999999999999999999999999999999998743 112235678999999999999
Q ss_pred CcEEEEEecccccccCCccceEEEEEeccccCCCeEEEE--------eecCcEEEEeeeEeEE
Q psy12043 87 PCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFH--------FEDGNWRMNGDASEFK 141 (143)
Q Consensus 87 ~~~~~~~C~~~~~~fPfD~q~C~l~f~s~~y~~~~v~l~--------~~n~EW~l~~~~~~~~ 141 (143)
|++++++|+||+++||||+|+|+++|+||+|+++++++. ..||||++.+..+...
T Consensus 123 ~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~~~~~~~~~ew~l~~~~~~~~ 185 (369)
T 2bg9_C 123 PAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLIIDPEAFTENGEWEIIHKPAKKN 185 (369)
T ss_dssp EEEEEECCSCGGGSSSTTCCEEEEEEEESSCCTTTCEEECCCGGGSCCTTSSEEEEECCEEEE
T ss_pred CEEEEEECcCcccCCCCCceEeeEEEEEecccCceEEEEEecccccceeCCEEEEeeeeEEEE
Confidence 999999999999999999999999999999999999997 4689999999876544
No 7
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=100.00 E-value=2.6e-37 Score=246.88 Aligned_cols=137 Identities=32% Similarity=0.716 Sum_probs=121.4
Q ss_pred EEEEee---ceeEEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEECCCCcccCCccccccCCCCCCCCCcceEEEEeeCC
Q psy12043 4 IIQSIL---NSKLVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDG 80 (143)
Q Consensus 4 ~i~~i~---~~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~~~~~iW~Pdi~~~n~~~~~~~~~~~~~~v~v~~~G 80 (143)
++++|. +.++++++++|+++.|+|+||+|||++|+|++.+.+++++||+||++++|++++. .......+++|++||
T Consensus 60 ~l~~i~~vdE~~q~~t~~~~l~~~W~D~rL~Wnp~~y~gi~~l~vp~~~IW~PDi~l~N~~d~~-~~~~~~~~v~v~~dG 138 (461)
T 4aq5_A 60 QLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYNNADGD-FAIVHMTKLLLDYTG 138 (461)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEECCTTCBCCTTTHHHHSSEEEEGGGSCCCCEEESSCCCSC-CTTCSSCEEEECSBC
T ss_pred EEeeehhhhccceEEEEEEEEeeeeECcccCCChhhcCCccEEEecCCCEECCceeeecccccc-cccccccceEEcCCc
Confidence 444544 4668889999999999999999999999999999999999999999999998853 222345789999999
Q ss_pred eEEEecCcEEEEEecccccccCCccceEEEEEeccccCCCeEEEE-----------eecCcEEEEeeeEeEE
Q psy12043 81 LISWVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFH-----------FEDGNWRMNGDASEFK 141 (143)
Q Consensus 81 ~V~~~~~~~~~~~C~~~~~~fPfD~q~C~l~f~s~~y~~~~v~l~-----------~~n~EW~l~~~~~~~~ 141 (143)
+|.|.+|++++++|+||+++||||+|+|+++|+||+|+++++++. .+||||++.+..+...
T Consensus 139 ~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~l~~~~~~~eW~l~~~~~~~~ 210 (461)
T 4aq5_A 139 KIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRPDLSTFMESGEWVMKDYRGWKH 210 (461)
T ss_dssp CEEECCEEEEEEECCCCGGGSSSSCEEEEEEEEESSCCTTTEEEECCCCCCSGGGCCTTCSSEEEEEEEEEE
T ss_pred cEEEeccccccccccccccCCCCccCccCeEEeccccCCceEEEEeccccccHHhhhccCceEEeeeeeEEE
Confidence 999999999999999999999999999999999999999999997 5799999999876543
No 8
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=2.5e-37 Score=241.27 Aligned_cols=134 Identities=33% Similarity=0.721 Sum_probs=119.7
Q ss_pred EeeceeEEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEECCCCcccCCccccccCCCCCCCCCcceEEEEeeCCeEEEec
Q psy12043 7 SILNSKLVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLISWVP 86 (143)
Q Consensus 7 ~i~~~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~~~~~iW~Pdi~~~n~~~~~~~~~~~~~~v~v~~~G~V~~~~ 86 (143)
+|.+.++++++++|+++.|+|+||+|||++|+|++.+.++.++||+||++++|++++. ........++|++||+|.|.+
T Consensus 42 ~vde~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~l~v~~~~IW~PDi~~~N~~~~~-~~~~~~~~~~i~~~G~V~~~~ 120 (370)
T 2bg9_A 42 NVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYNNADGD-FAIVHMTKLLLDYTGKIMWTP 120 (370)
T ss_dssp EEETTTTEEEEEEEEEEEECCTTSCCCTTTHHHHSSEEEEGGGSCCCCEEETTCCCSC-EESCSSCEEEECSSCCEEECC
T ss_pred cchhhccceEEEEEEeeeeECCCccCChhhcCCccEEEechhhccCCcEecccccccc-ccccccceEEEECCeeEEEec
Confidence 3445668899999999999999999999999999999999999999999999998742 112236789999999999999
Q ss_pred CcEEEEEecccccccCCccceEEEEEeccccCCCeEEEE-----------eecCcEEEEeeeEeEE
Q psy12043 87 PCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFH-----------FEDGNWRMNGDASEFK 141 (143)
Q Consensus 87 ~~~~~~~C~~~~~~fPfD~q~C~l~f~s~~y~~~~v~l~-----------~~n~EW~l~~~~~~~~ 141 (143)
|++++++|+||+++||||+|+|+++|+||+|+++++++. ..+|||++.+..+...
T Consensus 121 ~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~ew~l~~~~~~~~ 186 (370)
T 2bg9_A 121 PAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRPDLSTFMESGEWVMKDYRGWKH 186 (370)
T ss_dssp EEEEEEECCCCTTSSSSSCEEEEEEEEESSCCTTTEEEECCCCCCSTTSCCTTCSSEEEEEEEEEE
T ss_pred ceEEEEECCCCcCCCCCCcceeeEEEEEecccCcEEEEEecCCCcccccccccceEEEEcceEEEE
Confidence 999999999999999999999999999999999999997 4689999999876543
No 9
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=7.3e-37 Score=238.60 Aligned_cols=134 Identities=26% Similarity=0.618 Sum_probs=119.0
Q ss_pred EEEeeceeEEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEECCCCcccCCccccccCCCCCCCCCcceEEEEeeCCeEEE
Q psy12043 5 IQSILNSKLVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLISW 84 (143)
Q Consensus 5 i~~i~~~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~~~~~iW~Pdi~~~n~~~~~~~~~~~~~~v~v~~~G~V~~ 84 (143)
|.+|.+.++++++++|+++.|+|+||+|||++|+|++.+.++.++||+||++++|++++. .......++.|++||+|.|
T Consensus 40 i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~~IW~PDi~~~N~~~~~-~~~~~~~~~~v~~~G~V~~ 118 (370)
T 2bg9_B 40 LLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMNNNDGS-FEITLHVNVLVQHTGAVSW 118 (370)
T ss_dssp EEEEETTTTEEEEEEECEEEEECTTSCCCTTTTSSCSEEEEESSSSCCCCEEESSCCCSC-EESSSSCEEEEETTSEEEE
T ss_pred hhhhhccccceEEEEEEeeeeECcccCcCccccCCeeEEEechhhccCCCcccccccccc-ccccccceEEEeCCceEEE
Confidence 344555678899999999999999999999999999999999999999999999998742 1122356889999999999
Q ss_pred ecCcEEEEEecccccccCCccceEEEEEeccccCCCeEEEEe------------ecCcEEEEeeeEe
Q psy12043 85 VPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHF------------EDGNWRMNGDASE 139 (143)
Q Consensus 85 ~~~~~~~~~C~~~~~~fPfD~q~C~l~f~s~~y~~~~v~l~~------------~n~EW~l~~~~~~ 139 (143)
.+|++++++|+||+++||||+|+|+++|+||+|+++++++.+ .+|||++.+..+.
T Consensus 119 ~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~~~~~~~~~~~~~eW~l~~~~~~ 185 (370)
T 2bg9_B 119 HPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAMINQDAFTENGQWSIEHKPSR 185 (370)
T ss_dssp CCEEEEEECCCCTTCSSSTTCCCCEEEEEESSCCBTSCEEECSCCCCCSTTSCCTTCSSEECCCCEE
T ss_pred EecceEEEEccCcccCCCCCceeeeEEEEeccccccEEEEEeccCCccccccccccceEEEeccceE
Confidence 999999999999999999999999999999999999999873 5899999887664
No 10
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=100.00 E-value=1.3e-36 Score=233.20 Aligned_cols=129 Identities=22% Similarity=0.349 Sum_probs=118.4
Q ss_pred EeeceeEEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEECCCCcccCCccccccCCCCCCCCCcceEEEEeeCCeEEEec
Q psy12043 7 SILNSKLVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLISWVP 86 (143)
Q Consensus 7 ~i~~~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~~~~~iW~Pdi~~~n~~~~~~~~~~~~~~v~v~~~G~V~~~~ 86 (143)
++.|.++++++++|+++.|+|+||+|||++|+ ++.+.++.++||+||++++|+++. . ...+..++|++||+|.|.+
T Consensus 33 ~vde~~~~~t~~~~l~~~W~D~rL~w~~~~~~-i~~~~~~~~~IW~PDi~l~N~~~~--~-~~~~~~~~v~~~G~V~~~~ 108 (321)
T 3tlw_A 33 SLDDCAETFKVNAFLSLSWKDRRLAFDPVRSG-VRVKTYEPEAIWIPEIRFVNVENA--R-DADVVDISVSPDGTVQYLE 108 (321)
T ss_dssp EEETTTTEEEEEEEEEEEEECGGGCCCSTTTC-CSSEECCGGGSCCCCEEESSBSSC--C-EEEEEEEEECTTCEEEEEE
T ss_pred ceeccCcEEEEEEEEeeEEECcccCCCCccCC-eeeecccccCeEcCcEEeeccccc--c-cccceeEEEeCCccEEEec
Confidence 34456788999999999999999999999998 999999999999999999999884 2 4567899999999999999
Q ss_pred CcEEEEEecccccccCCccceEEEEEeccccCCCeEEEE-----------eecCcEEEEeeeEe
Q psy12043 87 PCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFH-----------FEDGNWRMNGDASE 139 (143)
Q Consensus 87 ~~~~~~~C~~~~~~fPfD~q~C~l~f~s~~y~~~~v~l~-----------~~n~EW~l~~~~~~ 139 (143)
|.+.++.|+||+++||||+|+|+++|+||+|+++++++. .+++||++.+..+.
T Consensus 109 ~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~ew~l~~~~~~ 172 (321)
T 3tlw_A 109 RFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAV 172 (321)
T ss_dssp EEEEEEECCCCCTTTTSCEEEEEEEEEEECCSSCCEEEEECGGGCEECTTCCBTTEEEEEEEEE
T ss_pred ceEEEEEEEeecccCCCCceeEeEEEecccCChhhEEEEEcCCcccccccccccceEEEeeEeE
Confidence 999999999999999999999999999999999999997 46899999998764
No 11
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=4e-37 Score=240.09 Aligned_cols=134 Identities=24% Similarity=0.563 Sum_probs=118.1
Q ss_pred EeeceeEEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEECCCCcccCCccccccCCCCCCCCCcceEEEEeeCCeEEEec
Q psy12043 7 SILNSKLVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLISWVP 86 (143)
Q Consensus 7 ~i~~~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~~~~~iW~Pdi~~~n~~~~~~~~~~~~~~v~v~~~G~V~~~~ 86 (143)
+|.+.++++++++|+++.|+|+||+|||++|+|++.+.++.++||+||++++|++++. .......++.|++||+|.|.+
T Consensus 41 ~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~~IW~PDi~~~N~~~~~-~~~~~~~~~~v~~~G~V~~~~ 119 (370)
T 2bg9_E 41 SLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLENNVDGQ-FEVAYYANVLVYNDGSMYWLP 119 (370)
T ss_dssp EEETTTTEEEEEEEEEEEEECGGGCCCTTTTTTCSCBCCCGGGSCCCCEEESSSCCSC-CBSSSSCCCEECSSSEEEECC
T ss_pred chhhcccceeEeEEEeeEEECCCcCCChhhcCCeeEEeechhccCCCCEeeccccCCc-ccccccccEEEECCccEEEec
Confidence 4445678899999999999999999999999999999999999999999999998742 112334677899999999999
Q ss_pred CcEEEEEecccccccCCccceEEEEEeccccCCCeEEEE------------eecCcEEEEeeeEeEE
Q psy12043 87 PCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFH------------FEDGNWRMNGDASEFK 141 (143)
Q Consensus 87 ~~~~~~~C~~~~~~fPfD~q~C~l~f~s~~y~~~~v~l~------------~~n~EW~l~~~~~~~~ 141 (143)
|++++++|+||+++||||+|+|+++|+||+|+++++++. ..+|||++.+..+...
T Consensus 120 ~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~~~~~~~~~~~~~eW~l~~~~~~~~ 186 (370)
T 2bg9_E 120 PAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGIDPEDFTENGEWTIRHRPAKKN 186 (370)
T ss_dssp EEEEEECCCCSSCSSSSSCCBCCEEEEESSSCTTSCCEECCCSCCCGGGSCCTTSSEEEEECCCCEE
T ss_pred CEEEEEECcccccCCCCCeEEEEEEEEeeccccceeEEEecCCCcccHhhcccccEEEEecceeEEE
Confidence 999999999999999999999999999999999999987 3478999998765443
No 12
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=100.00 E-value=3.4e-36 Score=221.33 Aligned_cols=130 Identities=29% Similarity=0.644 Sum_probs=115.4
Q ss_pred EEEEee---ce----eEEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEECCCCcccCCccccccCCCCCCCC-CcceEEE
Q psy12043 4 IIQSIL---NS----KLVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSP-FGETYHI 75 (143)
Q Consensus 4 ~i~~i~---~~----~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~~~~~iW~Pdi~~~n~~~~~~~~~-~~~~~v~ 75 (143)
+|++|+ +. .+++++++|+++.|+|+||+|||++|+|++.+.++.++||+||++++|+++.. +. .....++
T Consensus 41 ~l~~i~~v~E~~~~~~~~~t~~~~l~~~W~D~rL~wnp~~~~~i~~i~l~~~~IW~PDi~l~N~~~~~--~~~~~~~~v~ 118 (230)
T 4afh_A 41 SLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLD--MTLDRTTQAI 118 (230)
T ss_dssp EEEEEEEEEECTTSSEEEEEEEEEEEEEEECGGGCCCCCTTSCCSEEEECGGGSCCCCEEETTCSSSS--CEECTTSCEE
T ss_pred EHhHhhhhhhcccccCcEEEEEEEEeeEEECccccCCcccCCCeeEEEeccCCEECCcEEEEeccccc--ccccccceEE
Confidence 455554 46 78889999999999999999999999999999999999999999999998843 32 2356899
Q ss_pred EeeCCeEEEecCcEEEEEecccccccCCccceEEEEEeccccCCCeEEEEe------------ecCcEEEEeeeEeEE
Q psy12043 76 ASSDGLISWVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHF------------EDGNWRMNGDASEFK 141 (143)
Q Consensus 76 v~~~G~V~~~~~~~~~~~C~~~~~~fPfD~q~C~l~f~s~~y~~~~v~l~~------------~n~EW~l~~~~~~~~ 141 (143)
|++||+|.|.++++++++|+| |||+|+|+|+|+||+|++++|+|.+ +|| |+|+++.+...
T Consensus 119 v~~~G~V~~~~~~~~~s~C~m-----PfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~d~~~~~n~-W~l~~~~~~~~ 190 (230)
T 4afh_A 119 VFSNGTVLWIPPAVLKVLCVS-----QDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDS-LEILENSAQRQ 190 (230)
T ss_dssp EETTSEEEECCEEEEEEEEEE-----ETTEEEEEEEEEESSCCTTTEEEEEGGGCCSCBCTTCCCC-CCEEEEEEEEE
T ss_pred EEcCCEEEEecCEEEEEECCC-----CCCcccCCEeeccccccCceEEEEECCCCcccceeeecCc-EEEEEEEEEEE
Confidence 999999999999999999999 9999999999999999999999982 577 99999988654
No 13
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=100.00 E-value=5.9e-36 Score=242.10 Aligned_cols=136 Identities=25% Similarity=0.593 Sum_probs=119.4
Q ss_pred eEEEEee---ceeEEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEECCCCcccCCccccccCCCCCCCC-CcceEEEEee
Q psy12043 3 CIIQSIL---NSKLVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSP-FGETYHIASS 78 (143)
Q Consensus 3 v~i~~i~---~~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~~~~~iW~Pdi~~~n~~~~~~~~~-~~~~~v~v~~ 78 (143)
+++++|. +.++++++++|+++.|+|+||+|||++|+|++.+.++.++||+||++++|++++ .++ ....++.|++
T Consensus 58 l~l~~I~~VdE~~q~~t~~vwl~q~W~D~RL~Wnp~~y~gi~~l~vp~~~IW~PDi~l~N~~d~--~~~~~~~~nv~V~~ 135 (522)
T 4aq5_C 58 LTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQNNNDG--QYNVAYFCNVLVRP 135 (522)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCCCCCCTCSCEEECGGGSCCCCEEETTTCSS--CCBSCSSCCEEECS
T ss_pred EEeeecccccccccEEEEEEEEeeeEeCcccCCCchhcCCceEEeeccCCEECCcEeccccccC--CccccccceEEEeC
Confidence 3455554 466888999999999999999999999999999999999999999999999884 232 3456788999
Q ss_pred CCeEEEecCcEEEEEecccccccCCccceEEEEEeccccCCCeEEEE-----------------------eecCcEEEEe
Q psy12043 79 DGLISWVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFH-----------------------FEDGNWRMNG 135 (143)
Q Consensus 79 ~G~V~~~~~~~~~~~C~~~~~~fPfD~q~C~l~f~s~~y~~~~v~l~-----------------------~~n~EW~l~~ 135 (143)
||+|.|.++++++++|+||+++||||+|+|+++|+||+|+++++++. ..||||++.+
T Consensus 136 dG~V~~~~~~~~~ssC~mdl~~FPfD~Q~C~L~f~S~~Y~~~~v~l~~~~~~~~~~~~~~~~~~~d~~~f~~~gEW~l~~ 215 (522)
T 4aq5_C 136 NGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEIIH 215 (522)
T ss_dssp SSEEEECCEEEEEECCCCTTTSCSTTCCEEEEEEEETTCCTTTCCEEC---------------CCSTTSCCTTCSEEEEE
T ss_pred CccEEEEcccccccccccccCcCCCcCceEeEEEecccccCceeEEEeccCcccccCccceeeeccHHHceecceEEEee
Confidence 99999999999999999999999999999999999999999998775 2478999998
Q ss_pred eeEeE
Q psy12043 136 DASEF 140 (143)
Q Consensus 136 ~~~~~ 140 (143)
..+..
T Consensus 216 ~~~~~ 220 (522)
T 4aq5_C 216 KPAKK 220 (522)
T ss_dssp CCEEE
T ss_pred eEEEE
Confidence 77654
No 14
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=100.00 E-value=4.6e-36 Score=220.48 Aligned_cols=132 Identities=23% Similarity=0.551 Sum_probs=117.8
Q ss_pred EEEEe---eceeEEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEECCCCcccCCccccccCCCCCCCCCcceEEEEeeCC
Q psy12043 4 IIQSI---LNSKLVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDG 80 (143)
Q Consensus 4 ~i~~i---~~~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~~~~~iW~Pdi~~~n~~~~~~~~~~~~~~v~v~~~G 80 (143)
.+++| .+..+.+++++|+++.|+|+||+|+|++|+|++.+.++.++||+||++++|++++. +...+..++|+++|
T Consensus 45 ~l~~i~~v~e~~~~~~~~~~l~~~W~D~rL~w~~~~y~~i~~l~~~~~~IW~PDi~l~N~~~~~--~~~~~~~v~i~~~G 122 (228)
T 2wn9_A 45 TLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPV--QVLSPQIAVVTHDG 122 (228)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEEEEECCGGGGTTCCEEEEEGGGSCCCCEEESSBSSCC--EECSCCEEEEETEE
T ss_pred EhhHhhhhhccccEEEEEEEEEEEEECCCccCCchhcCCeeEEEecHHHccCCceecccccccc--cccccceEEEeCCe
Confidence 44454 44668889999999999999999999999999999999999999999999998853 22228999999999
Q ss_pred eEEEecCcEEEEEec---ccccccCCccceEEEEEeccccCCCeEEEE-----------eecCcEEEEeeeEeEE
Q psy12043 81 LISWVPPCQFQVYCR---LDLTYWPFDSQVCELILGSWVYDGNNIDFH-----------FEDGNWRMNGDASEFK 141 (143)
Q Consensus 81 ~V~~~~~~~~~~~C~---~~~~~fPfD~q~C~l~f~s~~y~~~~v~l~-----------~~n~EW~l~~~~~~~~ 141 (143)
+|.|.+|++++++|+ |+++ |+|+|+|+||||+|++++|++. .++|||++++..+...
T Consensus 123 ~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~Sw~y~~~~i~l~~~~~~~~~~~~~~~~ew~l~~~~~~~~ 193 (228)
T 2wn9_A 123 SVMFIPAQRLSFMCDPTGVDSE----EGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQ 193 (228)
T ss_dssp EEEECCEEEEEEECCCTTTTST----TCEEEEEEEEESSCCTTTEEEECSCSBCBCTTCCTTCSEEEEEEEEEEE
T ss_pred EEEEeCCEEEEEECCCCCCCCC----cCcEeeEEEEeecccccEEEEEecCCccchhhceecCCEEEEEEEEEEE
Confidence 999999999999999 9999 9999999999999999999997 4689999999887654
No 15
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=100.00 E-value=1.6e-35 Score=214.22 Aligned_cols=132 Identities=20% Similarity=0.382 Sum_probs=116.9
Q ss_pred eEEEEee---ceeEEEEEeeeeeeEEEcCCc-eeCCCCCCCeeEEEECCCCcccCCcccccc-CCCCCCCCCcceEEEEe
Q psy12043 3 CIIQSIL---NSKLVSYLTADIGVKWYDPVL-QWDPKKYGDIKQIYLAPQEVWQPDLSTFNS-AGGNDVSPFGETYHIAS 77 (143)
Q Consensus 3 v~i~~i~---~~~~~~~~~~~l~~~W~D~rL-~w~p~~~~~i~~i~~~~~~iW~Pdi~~~n~-~~~~~~~~~~~~~v~v~ 77 (143)
+.|++|. +..+.+++++|+++.|+|+|| +|+|++ |++.+.++.++||+||++++|+ +++ .++.. ..++|+
T Consensus 31 ~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~~w~~~~--~i~~~~~~~~~iW~PDi~~~N~~~~~--~~~~~-~~v~i~ 105 (203)
T 2bj0_A 31 FKLMNIVEADTEKDQVEVVLWTQASWKVPYYSSLLSSS--SLDQVSLPVSKMWTPDLSFYNAIAAP--ELLSA-DRVVVS 105 (203)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEEECGGGGGGTTTS--SCSEEEEEGGGSCCCCEEETTCSSCC--EECSC-CEEEEE
T ss_pred EEEEeEeeecCCCCEEEEEEEEEeEEECcchhccCccC--CceEEEEchhhccCCCcccccccccc--ccccc-eEEEEe
Confidence 3455554 466888899999999999999 999998 7999999999999999999999 773 34333 899999
Q ss_pred eCCeEEEecCcEEEEEecc-cccccCCccceEEEEEeccccCCCeEEEE------------eecCcEEEEeeeEeEE
Q psy12043 78 SDGLISWVPPCQFQVYCRL-DLTYWPFDSQVCELILGSWVYDGNNIDFH------------FEDGNWRMNGDASEFK 141 (143)
Q Consensus 78 ~~G~V~~~~~~~~~~~C~~-~~~~fPfD~q~C~l~f~s~~y~~~~v~l~------------~~n~EW~l~~~~~~~~ 141 (143)
+||+|.|.+|++++++|+| ++++ ||+|+|+|+||||+|++++|++. ..+|||+|++..+...
T Consensus 106 ~~G~V~~~~~~~~~~~C~m~dl~~--fD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~ew~l~~~~~~~~ 180 (203)
T 2bj0_A 106 KDGSVIYVPSQRVRFTCDLINVDT--EPGATCRIKVGSWTHDNKQFALITGEEGVVNIAEYFDSPKFDLLSATQSLN 180 (203)
T ss_dssp TTSEEEECCEEEEEEECCCTTTTS--SSCEEEEEEEEESSCCTTTEEEEECTTTTSCTTTTCCCSSEEEEEEEEEEE
T ss_pred CCcEEEEecceEEEEEccccccCc--cccceeeEEEEcccccCcEEEEEecCCCccchhcceecCCEEEEEeEEEEE
Confidence 9999999999999999999 9998 99999999999999999999997 4688999999887654
No 16
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=100.00 E-value=1.4e-35 Score=229.49 Aligned_cols=133 Identities=18% Similarity=0.345 Sum_probs=115.0
Q ss_pred EeeceeEEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEE-CCCCcccCCccccccCCCC-CCCCCcceEEEEeeCCeEEE
Q psy12043 7 SILNSKLVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYL-APQEVWQPDLSTFNSAGGN-DVSPFGETYHIASSDGLISW 84 (143)
Q Consensus 7 ~i~~~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~-~~~~iW~Pdi~~~n~~~~~-~~~~~~~~~v~v~~~G~V~~ 84 (143)
+|.|.++++++++|+++.|+|+||+|||++|++++.+.+ +.++||+||++++|++++. ......+..++|++||+|.|
T Consensus 41 ~vde~~~~~t~~~~l~~~W~D~rL~w~p~~~~~~~~l~~~~~~~IW~PDi~l~N~~~~~~~~~~~~n~~v~i~~~G~V~~ 120 (347)
T 3rhw_A 41 KIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLY 120 (347)
T ss_dssp EEETTTTEEEEEEEEEEEEECGGGCSSTTCSSSCSEEECCTTCCCCCCCEECTTEEEEEECCSSSCSEEEEEETTSEEEE
T ss_pred cccccceeEEEEEEEeeEEECcccCCCCccCCCceEEEecchhceecCCEeeeccccccccccccccEEEEEeCCCCEEE
Confidence 344466888899999999999999999999999999886 7899999999999998742 11123467789999999999
Q ss_pred ecCcEEEEEecccccccCCccceEEEEEeccccCCCeEEEEe--------------ecCcEEEEeeeEe
Q psy12043 85 VPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHF--------------EDGNWRMNGDASE 139 (143)
Q Consensus 85 ~~~~~~~~~C~~~~~~fPfD~q~C~l~f~s~~y~~~~v~l~~--------------~n~EW~l~~~~~~ 139 (143)
.+|++.++.|+||+++||||+|+|+++|+||+|+++++++.+ ..+||++.+....
T Consensus 121 ~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~e~~l~~~~~~ 189 (347)
T 3rhw_A 121 SVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTSTT 189 (347)
T ss_dssp EEEEEEEEECCCCCTTGGGCEEEEEEEEEESSCCTTTEEEEECSSCSEEECTTSGGGCCSEEEEEEEEE
T ss_pred ecceEEEEEeeeeeccCCCcceeEEEEeccCcCChhhEEEEecCCCceeecCcceeEccceEEeeEEee
Confidence 999999999999999999999999999999999999999962 3478999887543
No 17
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=100.00 E-value=2.5e-36 Score=242.64 Aligned_cols=136 Identities=23% Similarity=0.555 Sum_probs=119.5
Q ss_pred eEEEEeec---eeEEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEECCCCcccCCccccccCCCCCCCC-CcceEEEEee
Q psy12043 3 CIIQSILN---SKLVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSP-FGETYHIASS 78 (143)
Q Consensus 3 v~i~~i~~---~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~~~~~iW~Pdi~~~n~~~~~~~~~-~~~~~v~v~~ 78 (143)
+++++|.+ .++++++++|+++.|+|+||+|||++|+|++.+.++.++||+||++++|++++ .++ ....++.|++
T Consensus 34 l~l~~I~~VdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~~~~IW~PDi~l~N~~d~--~~~~~~~~nv~v~~ 111 (488)
T 4aq5_E 34 LTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLENNVDG--QFEVAYYANVLVYN 111 (488)
T ss_dssp EEEEEECCCBTTTTBEEEEEEEEEEEECCTTCCCTTTTTTCSCCCCCTTSSCCCCEECSSSCCS--CCBSCSSSCCCBCT
T ss_pred EEEeeeeccccccceeeeeeeeeeEEECcccCcCchhcCCceEEecCccCEECCceehhccccc--cccccccccEEEeC
Confidence 45666654 56888899999999999999999999999999999999999999999999884 232 2345678999
Q ss_pred CCeEEEecCcEEEEEecccccccCCccceEEEEEeccccCCCeEEEE-------------------eecCcEEEEeeeEe
Q psy12043 79 DGLISWVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFH-------------------FEDGNWRMNGDASE 139 (143)
Q Consensus 79 ~G~V~~~~~~~~~~~C~~~~~~fPfD~q~C~l~f~s~~y~~~~v~l~-------------------~~n~EW~l~~~~~~ 139 (143)
||+|.|.++++++++|+||+++||||+|+|+++|+||+|+++++++. ..||||++.+..+.
T Consensus 112 ~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~eW~l~~~~~~ 191 (488)
T 4aq5_E 112 DGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGEVVEWIHIDPEDFTENGEWTIRHRPAK 191 (488)
T ss_dssp TSEEEECCEEBCEECCCCSSSSSSSSCCCCCEEEEESSSCSSSCCEECCCSCC-------CGGGSCCTTCSEEEEECCCE
T ss_pred CceEEEecceeEEeecccccccCCCcCceeeEEeeeeccccceEEEEeccCCCcceeeeeccHHHccccceEEEEeeEEE
Confidence 99999999999999999999999999999999999999999999886 24789999987654
Q ss_pred E
Q psy12043 140 F 140 (143)
Q Consensus 140 ~ 140 (143)
.
T Consensus 192 ~ 192 (488)
T 4aq5_E 192 K 192 (488)
T ss_dssp E
T ss_pred E
Confidence 3
No 18
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=100.00 E-value=7e-35 Score=211.92 Aligned_cols=130 Identities=19% Similarity=0.395 Sum_probs=115.2
Q ss_pred EEEEee---ceeEEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEECCCCcccCCccccccCCCCCCCCCcceEEEEeeCC
Q psy12043 4 IIQSIL---NSKLVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDG 80 (143)
Q Consensus 4 ~i~~i~---~~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~~~~~iW~Pdi~~~n~~~~~~~~~~~~~~v~v~~~G 80 (143)
.+++|. +..+.+++++|+++.|+|+||+|+|++|+| .+.++.++||+||++++|++++. .......++|++||
T Consensus 35 ~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~--~l~~~~~~iW~PDi~~~N~~~~~--~~~~~~~~~i~~~G 110 (211)
T 1uw6_A 35 KFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPD--QVSVPISSLWVPDLAAYNAISKP--EVLTPQLARVVSDG 110 (211)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCCTTSCS--EEEEEGGGSCCCCEEETTBCSCC--EECSCCEEEEETTS
T ss_pred EHHHhhchhhhCcEEEEEEEEEeEeECcccccChhhcCC--eEEccHHHccCCCEeeecccccc--ccceeeEEEEeCCc
Confidence 445544 466888899999999999999999999999 89999999999999999998853 22234899999999
Q ss_pred eEEEecCcEEEEEec---ccccccCCccceEEEEEeccccCCCeEEEE-----------ee-cCcEEEEeeeEeEE
Q psy12043 81 LISWVPPCQFQVYCR---LDLTYWPFDSQVCELILGSWVYDGNNIDFH-----------FE-DGNWRMNGDASEFK 141 (143)
Q Consensus 81 ~V~~~~~~~~~~~C~---~~~~~fPfD~q~C~l~f~s~~y~~~~v~l~-----------~~-n~EW~l~~~~~~~~ 141 (143)
+|.|.+|++++++|+ ||++ |+|+|+|+||||+|++++|++. .. +|||++++..+...
T Consensus 111 ~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~S~~y~~~~i~l~~~~~~~~~~~~~~~~~ew~l~~~~~~~~ 182 (211)
T 1uw6_A 111 EVLYMPSIRQRFSCDVSGVDTE----SGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKN 182 (211)
T ss_dssp EEEECCEEEEEEECCCTTTTSS----SCEEEEEEEEESSCCTTTEEEEECCCSSCTTTTSCTTSSEEEEEEEEEEE
T ss_pred eEEEeCCEEEEEECCCCCCCCC----cceEeEEEEEcccccCceEEEEecccccchhhhcccCCCEEEEeeEEEEE
Confidence 999999999999999 9999 9999999999999999999998 45 99999999887654
No 19
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=100.00 E-value=2.8e-36 Score=242.64 Aligned_cols=133 Identities=26% Similarity=0.611 Sum_probs=117.0
Q ss_pred EeeceeEEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEECCCCcccCCccccccCCCCCCCCCcceEEEEeeCCeEEEec
Q psy12043 7 SILNSKLVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLISWVP 86 (143)
Q Consensus 7 ~i~~~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~~~~~iW~Pdi~~~n~~~~~~~~~~~~~~v~v~~~G~V~~~~ 86 (143)
+|.+.++++++++|+++.|+|+||+|||++|+|++.+.++.++||+||++++|++++. .......++.|++||+|.|.+
T Consensus 66 ~vdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~~~~IW~PDi~l~N~~d~~-~~~~~~~nv~v~~~G~V~~~~ 144 (493)
T 4aq5_B 66 ILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMNNNDGS-FEITLHVNVLVQHTGAVSWHP 144 (493)
T ss_dssp EEETTTTEEEEEEECEEEEECTTCCCCHHHHSSCSCEEECSCSSCCCCCEESSCCCSC-EESSSSSCEEECTTSEEEECC
T ss_pred eccccceEEEEEEEeecceECcccCCChhhcCCeeEEecccccCccCcEEEecccccc-cccccccceEEecCCCEEEee
Confidence 3445668889999999999999999999999999999999999999999999998842 112335678999999999999
Q ss_pred CcEEEEEecccccccCCccceEEEEEeccccCCCeEEEEe---------------------ecCcEEEEeeeEeE
Q psy12043 87 PCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHF---------------------EDGNWRMNGDASEF 140 (143)
Q Consensus 87 ~~~~~~~C~~~~~~fPfD~q~C~l~f~s~~y~~~~v~l~~---------------------~n~EW~l~~~~~~~ 140 (143)
+++++++|+||+++||||+|+|+++|+||+|+++++++.+ .||||++.+..+..
T Consensus 145 ~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~l~~f~~~~eW~l~~~~~~~ 219 (493)
T 4aq5_B 145 SAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAKGEREVKEIMINQDAFTENGQWSIEHKPSRK 219 (493)
T ss_dssp EEEEEECCSCTTCSSSTTCCCCEEEEECSSCCBTSCEEECCCCC---------CCSGGGCCTTCSSBCCCCCCEE
T ss_pred eeeeeecccccccCCCccceeEEEEEeeecCccccEEEEeccCCCCccceecccccHHHhccccceeeeeeeEEE
Confidence 9999999999999999999999999999999999998863 47899998876543
No 20
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=99.97 E-value=3.8e-32 Score=208.36 Aligned_cols=129 Identities=19% Similarity=0.304 Sum_probs=111.4
Q ss_pred eEEEEee---ceeEEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEE--------CCCCcccCCccccccCCCCCCCCCcc
Q psy12043 3 CIIQSIL---NSKLVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYL--------APQEVWQPDLSTFNSAGGNDVSPFGE 71 (143)
Q Consensus 3 v~i~~i~---~~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~--------~~~~iW~Pdi~~~n~~~~~~~~~~~~ 71 (143)
+++++|. |.++++++++|+++.|+|+||+| +|++.+.+ +.++||+||++++|+++. .. ..+
T Consensus 18 ~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~~-----~~~~~l~l~~~~~~~ip~~~IW~Pdi~l~N~~~~--~~-~~~ 89 (322)
T 3rqw_A 18 IFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKT-----PGDKPLIVENTQIERWINNGLWVPALEFINVVGS--PD-TGN 89 (322)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEEECSCCCC-----STTSCEEEETHHHHHHHHTTCCCCCEEETTBSSC--CE-EEE
T ss_pred EEEEeeccccccCcEEEEEEEEeeEEechhhCC-----CCCCceeecchhhcccccccccCCcEEEEcccCc--cc-ccc
Confidence 3455554 46788999999999999999998 45666644 589999999999999884 33 667
Q ss_pred eEEEEeeCCeEEEecCcEEEEEecccccccCCccceEEEEEeccccCCCeEEEEe-----------ecCcEEE-EeeeEe
Q psy12043 72 TYHIASSDGLISWVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHF-----------EDGNWRM-NGDASE 139 (143)
Q Consensus 72 ~~v~v~~~G~V~~~~~~~~~~~C~~~~~~fPfD~q~C~l~f~s~~y~~~~v~l~~-----------~n~EW~l-~~~~~~ 139 (143)
..++|++||+|.|.+|.+.++.|+||+++||||+|+|+++|+||+|+++++++.+ +++||++ .+..+.
T Consensus 90 ~~~~i~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~ew~l~~~~~~~ 169 (322)
T 3rqw_A 90 KRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRGKASTH 169 (322)
T ss_dssp EEEEECTTSEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEESSCSSEEEEEEEEECCSCSSSSCSSSSEEECCSCEEC
T ss_pred eeEEEeCCcCEEEeeceeEEEeccccccCCCCCCcEEEEEEEEcccCcceEEEEECCCcccccCCCCCCceEEEeeeEEE
Confidence 8999999999999999999999999999999999999999999999999999972 4689999 877654
No 21
>1g6e_A Antifungal protein; all-beta, two antiparallel beta-sheets, parallel beta- sandwich; NMR {Streptomyces tendae} SCOP: b.11.1.6 PDB: 1gh5_A
Probab=73.64 E-value=0.76 Score=26.79 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=22.0
Q ss_pred CceEEEEeecee-EEEEEeeeeeeEEEcCCceeCCCCCCCeeEEEECCCCcccCC
Q psy12043 1 MPCIIQSILNSK-LVSYLTADIGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPD 54 (143)
Q Consensus 1 ~~v~i~~i~~~~-~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~i~~~~~~iW~Pd 54 (143)
|||.||.+.-.. ..--+++.++-.-.|||| +.+.+....-|.|.
T Consensus 32 mpvaiygvnwiesgnnvvt~~fqrnls~prl----------etitl~kw~sw~pg 76 (87)
T 1g6e_A 32 MPVAIYGVNWVESGNNVVTLQFQRNLSDPRL----------ETITLQKWGSWNPG 76 (87)
T ss_dssp ECCCCCSEEEEEECSSCEEEEEESCTTTTCE----------EEEEECTTEEECCS
T ss_pred ceEEEEEeeEEeeCCcEEEEEeeccCCCcce----------eEEEhhHhcCCCCC
Confidence 788888776522 111122224444456665 44555555555553
No 22
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=21.98 E-value=17 Score=18.94 Aligned_cols=10 Identities=40% Similarity=0.893 Sum_probs=8.2
Q ss_pred eEEEcCCcee
Q psy12043 23 VKWYDPVLQW 32 (143)
Q Consensus 23 ~~W~D~rL~w 32 (143)
-.|.|||+.|
T Consensus 36 TtWe~Pr~~~ 45 (46)
T 2l4j_A 36 TSWLDPRLET 45 (46)
T ss_dssp EECSCCSSCC
T ss_pred EeCCCCCcCC
Confidence 5799999875
Done!