RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12043
(143 letters)
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich, Cys-loop,
buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus
musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 123 bits (310), Expect = 2e-36
Identities = 36/105 (34%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 24 KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 83
+W D L+W+P YG +K+I++ +++W+PD+ +N+A G+ T + G I+
Sbjct: 60 QWVDYNLKWNPDDYGGVKKIHIPSEKIWRPDVVLYNNADGDFAIVK-FTKVLLDYTGHIT 118
Query: 84 WVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHFED 128
W PP F+ YC + +T++PFD Q C + LG+ YDG+ + + E
Sbjct: 119 WTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAINPES 163
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 124 bits (312), Expect = 3e-35
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 24 KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 83
+W D L+W+P YG IK+I L +VW PDL +N+A G+ T + G I
Sbjct: 59 QWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVH-MTKLLLDYTGKIM 117
Query: 84 WVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHFEDGNWRMN 134
W PP F+ YC + +T++PFD Q C + LG W YDG + E ++
Sbjct: 118 WTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRPDLS 168
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 121 bits (306), Expect = 2e-34
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 21 IGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDG 80
+ WYD L W+ +Y DI + L P+ +W PD+ N+ G + + +G
Sbjct: 58 MDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQNNNDGQYNVAY-FCNVLVRPNG 116
Query: 81 LISWVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHFED 128
++W+PP F+ C +++ Y+PFD Q C L + Y+ N I
Sbjct: 117 YVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLII 164
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 121 bits (305), Expect = 3e-34
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 25 WYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLISW 84
W D L W+ +Y I + + + +W PD+ N+ G + + +DG + W
Sbjct: 59 WNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAY-YANVLVYNDGSMYW 117
Query: 85 VPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHFED 128
+PP ++ C + +TY+PFD Q C L+ S Y+ + ++
Sbjct: 118 LPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSA 161
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 120 bits (303), Expect = 6e-34
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 21 IGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDG 80
+ + W D LQWDP Y IK + + +VWQPD+ N+ G+ + G
Sbjct: 56 LNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITL-HVNVLVQHTG 114
Query: 81 LISWVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHFEDGNWRMNGDASEF 140
+SW P ++ C + + Y+PFD Q C ++ S+ YD + + + F
Sbjct: 115 AVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAM---INQDAF 171
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 114 bits (286), Expect = 6e-33
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Query: 24 KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 83
W D LQW+ +Y +KQ+ + +W PDL+ +N+ +V + +S G +
Sbjct: 57 SWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLT--PQLALVNSSGHVQ 114
Query: 84 WVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHFEDGNWRMNGDASEFKIK 143
++P + + C + C+L GSW + +D ++ + S F++
Sbjct: 115 YLPSIRQRFSCDVSGVDTE-SGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELV 173
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 118 bits (296), Expect = 2e-32
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 24 KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 83
+W D L+W+P YG IK+I L +VW PDL +N+A G+ T + G I
Sbjct: 83 QWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVH-MTKLLLDYTGKIM 141
Query: 84 WVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHFEDGNWRMN 134
W PP F+ YC + +T++PFD Q C + LG W YDG + E ++
Sbjct: 142 WTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRPDLS 192
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 118 bits (297), Expect = 2e-32
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 21 IGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDG 80
+ WYD L W+ +Y DI + L P+ +W PD+ N+ G + + +G
Sbjct: 79 MDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQNNNDGQYNVAY-FCNVLVRPNG 137
Query: 81 LISWVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHFEDGNWRMNGDASE 139
++W+PP F+ C +++ Y+PFD Q C L + Y+ N I E
Sbjct: 138 YVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLMTDTIDGKDYPIE 196
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 111 bits (278), Expect = 2e-31
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 24 KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 83
+W L WDP +YG+I + ++W PD++ ++S V + + DG +
Sbjct: 68 RWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLS--PQIAVVTHDGSVM 125
Query: 84 WVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHFEDGNWRMNGDASEF 140
++P + C + C + GSWVY G ID + D S +
Sbjct: 126 FIPAQRLSFMCDPT-GVDSEEGATCAVKFGSWVYSGFEIDLKTDTD----QVDLSSY 177
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 115 bits (289), Expect = 2e-31
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 21 IGVKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDG 80
+ + W D LQWDP Y IK + + +VWQPD+ N+ G+ + G
Sbjct: 80 LNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITL-HVNVLVQHTG 138
Query: 81 LISWVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHFEDGN 130
+SW P ++ C + + Y+PFD Q C ++ S+ YD + +
Sbjct: 139 AVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDA 188
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 114 bits (286), Expect = 5e-31
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 25 WYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLISW 84
W D L W+ +Y I + + + +W PD+ N+ G + + +DG + W
Sbjct: 59 WNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAY-YANVLVYNDGSMYW 117
Query: 85 VPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHFEDGNW 131
+PP ++ C + +TY+PFD Q C L+ S Y+ + ++
Sbjct: 118 LPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEG 164
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 105 bits (263), Expect = 3e-29
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 24 KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 83
W D +L+WDP+ D ++I ++P E+W PD+ FNS + T I S+G +
Sbjct: 68 SWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDR-TTQAIVFSNGTVL 126
Query: 84 WVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHFEDGNWRMNGD 136
W+PP +V C D C GSWVY + +D HF D + D
Sbjct: 127 WIPPAVLKVLCVSQ-----DDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLD 174
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Length = 211
Score = 102 bits (256), Expect = 2e-28
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 5/108 (4%)
Query: 24 KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 83
W D L W+ D + + +W PDL+ +N+ +V SDG +
Sbjct: 58 TWSDRTLAWNSSHSPDQ--VSVPISSLWVPDLAAYNAISKPEVLTP--QLARVVSDGEVL 113
Query: 84 WVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHFEDGNW 131
++P + + C + C + +GSW + I N
Sbjct: 114 YMPSIRQRFSCDVSGVDTE-SGATCRIKIGSWTHHSREISVDPTTENS 160
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein,
glycprotein, IGG fold, immunoglobulin domain, pentamer,
signal; HET: CXS; 2.0A {Bulinus truncatus}
Length = 203
Score = 98.3 bits (245), Expect = 1e-26
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 24 KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 83
W P + Q+ L ++W PDLS +N+ ++ + S DG +
Sbjct: 55 SWKVPYY-SSLLSSSSLDQVSLPVSKMWTPDLSFYNAIAAPELLS--ADRVVVSKDGSVI 111
Query: 84 WVPPCQFQVYCRL-DLTYWPFDSQVCELILGSWVYDGNNIDFHFEDGNWRMNGDASEF 140
+VP + + C L ++ P C + +GSW +D + + +E+
Sbjct: 112 YVPSQRVRFTCDLINVDTEPG--ATCRIKVGSWTHDNKQFALITGEEGV---VNIAEY 164
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 95.0 bits (237), Expect = 1e-24
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 6/122 (4%)
Query: 24 KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 83
W D L +DP + G ++ P+ +W P++ N D S DG +
Sbjct: 50 SWKDRRLAFDPVRSG-VRVKTYEPEAIWIPEIRFVNVENARDADV---VDISVSPDGTVQ 105
Query: 84 WVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHFEDGNWRMNGDA--SEFK 141
++ +V LD +PFDSQ + L D NI + N D + +
Sbjct: 106 YLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWD 165
Query: 142 IK 143
I+
Sbjct: 166 IE 167
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 92.0 bits (229), Expect = 2e-24
Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 6/122 (4%)
Query: 24 KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 83
W D L +DP + G ++ P+ +W P++ N D S DG +
Sbjct: 46 SWKDRRLAFDPVRSG-VRVKTYEPEAIWIPEIRFVNVENARDAD---VVDISVSPDGTVQ 101
Query: 84 WVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHFEDGNWRMNGDAS--EFK 141
++ +V LD DSQ + L D NI + N D +
Sbjct: 102 YLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWD 161
Query: 142 IK 143
I+
Sbjct: 162 IE 163
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 87.6 bits (217), Expect = 1e-21
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 2/109 (1%)
Query: 24 KWYDPVLQWDPKKYGDIKQIYLAP-QEVWQPDLSTFNSAGGN-DVSPFGETYHIASSDGL 81
W D L + K G + L ++W PD N +DG
Sbjct: 58 SWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGT 117
Query: 82 ISWVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHFEDGN 130
+ + + C + L Y+P D Q C + L S+ Y +I++ +++ +
Sbjct: 118 VLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHS 166
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 82.8 bits (205), Expect = 6e-20
Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 8/124 (6%)
Query: 25 WYDPVLQWDPKKYGDIKQIYLAP---QEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGL 81
W + K ++ + +W P L N G G + DG
Sbjct: 43 WTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGS---PDTGNKRLMLFPDGR 99
Query: 82 ISWVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHFEDGNWRMNGDA--SE 139
+ + +D +PFD Q L L + Y+ + F + E
Sbjct: 100 VIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDE 159
Query: 140 FKIK 143
+ I+
Sbjct: 160 WWIR 163
>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, TIM
barrel, TPIA; 2.35A {Burkholderia thailandensis}
Length = 272
Score = 27.9 bits (63), Expect = 1.2
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 129 GNWRMNGDASE 139
GNW+M+G S
Sbjct: 32 GNWKMHGRLSG 42
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone
phosphate, michaelis complex; HET: FTR 13P; 1.20A
{Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A*
1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*
Length = 247
Score = 27.6 bits (62), Expect = 1.3
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 129 GNWRMNGDASE 139
GN+++NG
Sbjct: 8 GNFKLNGSKQS 18
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom
initiative, RSGI, structural genomics; 1.60A {Thermus
thermophilus}
Length = 250
Score = 27.8 bits (63), Expect = 1.3
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 129 GNWRMNGDASE 139
GNW+M+ SE
Sbjct: 8 GNWKMHKTPSE 18
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A
{Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A
Length = 256
Score = 27.5 bits (62), Expect = 1.3
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 129 GNWRMNGDASE 139
GNW++NG
Sbjct: 8 GNWKLNGSKEM 18
>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium
tuberculosis} PDB: 3tao_A* 3gvg_A
Length = 267
Score = 27.5 bits (62), Expect = 1.4
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 129 GNWRMNGDASE 139
GNW+MN + E
Sbjct: 9 GNWKMNLNHYE 19
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A
{Thermotoga maritima} SCOP: c.1.1.1
Length = 255
Score = 27.4 bits (62), Expect = 1.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 129 GNWRMNGDASE 139
GNW+M+ SE
Sbjct: 9 GNWKMHKTISE 19
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A
{Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A
Length = 255
Score = 27.4 bits (62), Expect = 1.5
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 129 GNWRMNGDASE 139
GNW++NG
Sbjct: 8 GNWKLNGSRHM 18
>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis,
pentose; HET: CIT; 1.90A {Staphylococcus aureus}
Length = 254
Score = 27.4 bits (62), Expect = 1.6
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 129 GNWRMNGDASE 139
GNW+MN E
Sbjct: 9 GNWKMNKTVQE 19
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures,
university of washingto niaid, I structural genomics;
1.55A {Cryptosporidium parvum iowa II}
Length = 271
Score = 27.6 bits (62), Expect = 1.6
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 129 GNWRMNGDASE 139
GN++ NG
Sbjct: 30 GNFKCNGTKES 40
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}
Length = 259
Score = 27.5 bits (62), Expect = 1.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 129 GNWRMNGDASE 139
GNW+MNGD +
Sbjct: 9 GNWKMNGDKKQ 19
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability;
1.50A {Entamoeba histolytica} SCOP: c.1.1.1
Length = 261
Score = 27.5 bits (62), Expect = 1.7
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 129 GNWRMNGDASE 139
GNW+ NG +
Sbjct: 10 GNWKCNGTLAS 20
>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia
intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A
Length = 257
Score = 27.5 bits (62), Expect = 1.7
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 129 GNWRMNGDASE 139
GN++ NG
Sbjct: 10 GNFKCNGSLDF 20
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition
state analogue, glycolysis, pentose shunt,
gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A
{Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A
2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A
1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*
Length = 251
Score = 27.4 bits (62), Expect = 1.7
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 129 GNWRMNGDASE 139
NW+ NG +
Sbjct: 11 ANWKCNGTTAS 21
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate,
META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A
{Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A
1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A
3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A
3pvf_A 3py2_A 2vfd_A 2vfe_A*
Length = 248
Score = 27.1 bits (61), Expect = 1.7
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 129 GNWRMNGDASE 139
NW+ NG
Sbjct: 9 ANWKCNGTLES 19
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt,
gluconeogenesis, lipid synthesis, fatty acid
biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}
Length = 233
Score = 27.1 bits (61), Expect = 1.7
Identities = 1/11 (9%), Positives = 4/11 (36%)
Query: 129 GNWRMNGDASE 139
N++ +
Sbjct: 6 ANFKSAMPIFK 16
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome,
gluconeogenesis, lipid synthesis, monomeric mutant,
glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}
Length = 244
Score = 27.1 bits (61), Expect = 1.8
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 129 GNWRMNGDASE 139
NW+ NG S
Sbjct: 11 ANWKCNGSESL 21
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; 1.70A {Caenorhabditis elegans}
SCOP: c.1.1.1
Length = 275
Score = 27.2 bits (61), Expect = 1.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 129 GNWRMNGDASE 139
GNW+MNGD +
Sbjct: 29 GNWKMNGDYAS 39
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome,
TIM-barrel, gluconeogenesis, lipid synthesis, atomic
resolution; 1.15A {Trypanosoma brucei brucei} PDB:
2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A
1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A
2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ...
Length = 250
Score = 27.1 bits (61), Expect = 1.8
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 129 GNWRMNGDASE 139
NW+ NG
Sbjct: 10 ANWKCNGSQQS 20
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic
triose-phosphate, glycolysis; 2.40A {Geobacillus
stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Length = 252
Score = 27.0 bits (61), Expect = 1.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 129 GNWRMNGDASE 139
GNW+MNG +E
Sbjct: 7 GNWKMNGTLAE 17
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the
ligand-free state, conformational heterogeneity,
TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1
PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1*
8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A*
1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...
Length = 248
Score = 27.1 bits (61), Expect = 1.8
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 129 GNWRMNGDASE 139
GNW+MNG
Sbjct: 10 GNWKMNGRKKN 20
>3s6d_A Putative triosephosphate isomerase; seattle structural genomics
center for infectious disease, S pathogenic fungus,
eukaryote; 2.20A {Coccidioides immitis RS}
Length = 310
Score = 27.3 bits (61), Expect = 1.8
Identities = 2/11 (18%), Positives = 4/11 (36%)
Query: 129 GNWRMNGDASE 139
+ +M S
Sbjct: 41 ISLKMYFTPSR 51
>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis,
glycolysis; 2.40A {Rhipicephalus microplus}
Length = 249
Score = 27.1 bits (61), Expect = 1.9
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 129 GNWRMNGDASE 139
GNW+M+G +
Sbjct: 10 GNWKMHGSKNS 20
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW,
gluconeogenesis, glycolysis, pentose shunt; 1.60A
{Bartonella henselae}
Length = 275
Score = 26.8 bits (60), Expect = 2.6
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 129 GNWRMNGDASE 139
GNW+MNG
Sbjct: 32 GNWKMNGTGES 42
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4
tetrahedral Zn+2, antiparallel beta strand and alpha
helix, NESG project; NMR {Escherichia coli} SCOP:
g.39.1.9
Length = 68
Score = 25.3 bits (55), Expect = 3.4
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 86 PPCQFQVYCRLDLTYWPFDSQVCELI-LGSWVYDGNNI 122
P C V + PF S+ C+LI LG W + I
Sbjct: 13 PTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRI 50
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta
sheet, transport protein; 1.90A {Methanosarcina
acetivorans}
Length = 294
Score = 26.7 bits (58), Expect = 3.4
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 30 LQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 83
++W KK + + + W+ +L + F I G +
Sbjct: 1 MEWAAKK---TNSLTSSSERTWKANLLVPVEDPRELMGTFDFLRDITYPKGSVK 51
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 25.6 bits (57), Expect = 7.2
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 35 KKYGDIKQIYLAPQEV 50
++YGD+ QI + V
Sbjct: 46 QRYGDVLQIRIGSTPV 61
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 25.6 bits (57), Expect = 7.4
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 35 KKYGDIKQIYLAPQEV 50
++YGD+ QI L +
Sbjct: 39 RRYGDVFQIRLGSCPI 54
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 25.3 bits (56), Expect = 8.3
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 35 KKYGDIKQIYLAPQEV 50
+K G + ++ L QEV
Sbjct: 54 QKLGPVYRLRLGLQEV 69
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450,
CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase,
heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB:
3ruk_A*
Length = 494
Score = 25.2 bits (56), Expect = 8.7
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 35 KKYGDIKQIYLAPQEV 50
KKYG I + + +
Sbjct: 40 KKYGPIYSVRMGTKTT 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.476
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,334,043
Number of extensions: 126856
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 54
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.7 bits)