RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12043
(143 letters)
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great
pond snail (Lymnaea stagnalis) [TaxId: 6523]}
Length = 208
Score = 63.6 bits (154), Expect = 6e-14
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 5/107 (4%)
Query: 24 KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 83
W D L W+ D + + +W PDL+ +N+ +V SDG +
Sbjct: 58 TWSDRTLAWNSSHSPDQ--VSVPISSLWVPDLAAYNAISKPEVLTP--QLARVVSDGEVL 113
Query: 84 WVPPCQFQVYCRLDLTYWPFDSQVCELILGSWVYDGNNIDFHFEDGN 130
++P + + C + C + +GSW + I N
Sbjct: 114 YMPSIRQRFSCDVSGVDTESG-ATCRIKIGSWTHHSREISVDPTTEN 159
>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG
{Escherichia coli [TaxId: 562]}
Length = 65
Score = 25.7 bits (56), Expect = 0.66
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 86 PPCQFQVYCRLDLTYWPFDSQVCELI-LGSWVYDGNNI 122
P C V + PF S+ C+LI LG W + I
Sbjct: 10 PTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRI 47
>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 247
Score = 26.0 bits (56), Expect = 1.9
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 129 GNWRMNGDASEFK 141
GN+++NG K
Sbjct: 8 GNFKLNGSKQSIK 20
>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 246
Score = 26.0 bits (56), Expect = 2.0
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 129 GNWRMNGDASEFK 141
NW+ NG K
Sbjct: 7 ANWKCNGTLESIK 19
>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 246
Score = 26.0 bits (56), Expect = 2.0
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 129 GNWRMNGDASEFK 141
GNW+MNG
Sbjct: 8 GNWKMNGRKKNLG 20
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus
woesei [TaxId: 2262]}
Length = 224
Score = 25.7 bits (55), Expect = 2.2
Identities = 2/14 (14%), Positives = 7/14 (50%)
Query: 129 GNWRMNGDASEFKI 142
N++ +A+ +
Sbjct: 10 INFKTYIEATGKRA 23
>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana
[TaxId: 5665]}
Length = 249
Score = 25.6 bits (55), Expect = 2.2
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 129 GNWRMNGDASEFK 141
NW+ NG + +
Sbjct: 9 ANWKCNGTTASIE 21
>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba
histolytica [TaxId: 5759]}
Length = 260
Score = 25.6 bits (55), Expect = 2.3
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 129 GNWRMNGDASEFK 141
GNW+ NG + +
Sbjct: 9 GNWKCNGTLASIE 21
>d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima
[TaxId: 2336]}
Length = 252
Score = 25.5 bits (55), Expect = 2.4
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 129 GNWRMNGDASEFK 141
GNW+M+ SE K
Sbjct: 8 GNWKMHKTISEAK 20
>d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus
[TaxId: 90736]}
Length = 255
Score = 25.3 bits (54), Expect = 2.8
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 129 GNWRMNGDASEFK 141
GNW++NG
Sbjct: 7 GNWKLNGSKEMVV 19
>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei
[TaxId: 5691]}
Length = 249
Score = 25.3 bits (54), Expect = 2.9
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 129 GNWRMNGDASEFK 141
NW+ NG
Sbjct: 9 ANWKCNGSQQSLS 21
>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli
[TaxId: 562]}
Length = 255
Score = 25.2 bits (54), Expect = 2.9
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 129 GNWRMNGDASEFK 141
GNW++NG
Sbjct: 8 GNWKLNGSRHMVH 20
>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 257
Score = 25.2 bits (54), Expect = 3.2
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 129 GNWRMNGDASEFK 141
GNW+MNGD +
Sbjct: 17 GNWKMNGDYASVD 29
>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 251
Score = 25.2 bits (54), Expect = 3.7
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 129 GNWRMNGDASE 139
GNW+MNG +E
Sbjct: 7 GNWKMNGTLAE 17
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax
[TaxId: 2271]}
Length = 226
Score = 24.5 bits (52), Expect = 5.8
Identities = 3/14 (21%), Positives = 8/14 (57%)
Query: 129 GNWRMNGDASEFKI 142
N++ G+A+ +
Sbjct: 8 INFKAYGEAAGKRA 21
>d1znpa1 b.82.1.16 (A:4-143) Hypothetical protein Atu3615
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 140
Score = 23.6 bits (51), Expect = 9.0
Identities = 6/36 (16%), Positives = 10/36 (27%)
Query: 96 LDLTYWPFDSQVCELILGSWVYDGNNIDFHFEDGNW 131
+ L +V LG + +G W
Sbjct: 70 IALHLSQDGREVQTFTLGPAILEGERPQVIVPANCW 105
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.476
Gapped
Lambda K H
0.267 0.0421 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 610,393
Number of extensions: 27896
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 26
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)